Wall clock time and date at job start Tue Mar 31 2020 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35579 * 116.99839 * 2 1 4 4 C 1.39157 * 119.50837 * 180.02562 * 3 2 1 5 5 C 1.37999 * 119.31401 * 179.74034 * 4 3 2 6 6 C 1.40273 * 118.36224 * 0.50384 * 5 4 3 7 7 C 1.47684 * 120.51202 * 179.75181 * 6 5 4 8 8 C 1.39764 * 120.65607 * 64.72237 * 7 6 5 9 9 C 1.38329 * 118.47544 * 180.02562 * 8 7 6 10 10 C 1.39087 * 119.73321 * 0.02562 * 9 8 7 11 11 N 1.31273 * 121.36423 * 359.97438 * 10 9 8 12 12 C 1.33719 * 121.62978 * 0.02562 * 11 10 9 13 13 C 1.40750 * 119.94224 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00111 * 175.52408 * 13 12 11 15 15 C 1.40128 * 120.00017 * 355.52041 * 13 12 11 16 16 N 1.30712 * 119.99989 * 6.62591 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 186.62854 * 15 13 12 18 18 H 1.48496 * 109.47153 * 94.98065 * 17 15 13 19 19 H 1.48503 * 109.47181 * 214.98185 * 17 15 13 20 20 H 1.48499 * 109.47218 * 334.97786 * 17 15 13 21 21 C 1.39809 * 118.97112 * 359.47894 * 6 5 4 22 22 Cl 1.73598 * 119.70728 * 180.25161 * 21 6 5 23 23 N 1.31807 * 120.57452 * 0.27527 * 21 6 5 24 24 H 1.09001 * 109.47606 * 300.00179 * 1 2 3 25 25 H 1.09001 * 109.46997 * 60.00583 * 1 2 3 26 26 H 1.09008 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.34341 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.81744 * 180.27465 * 5 4 3 29 29 H 1.08000 * 120.76177 * 0.02562 * 8 7 6 30 30 H 1.07990 * 120.13366 * 179.97438 * 9 8 7 31 31 H 1.08004 * 119.31668 * 179.72112 * 10 9 8 32 32 H 0.97002 * 119.99907 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0444 1.2080 0.0000 4 6 3.4346 1.2690 -0.0005 5 6 4.0569 2.5007 -0.0060 6 6 3.2557 3.6521 0.0000 7 6 3.8718 4.9943 0.0001 8 6 4.6308 5.4301 -1.0896 9 6 5.1877 6.6954 -1.0416 10 6 4.9834 7.4970 0.0766 11 7 4.2690 7.0792 1.0955 12 6 3.7059 5.8664 1.1068 13 6 2.9472 5.4544 2.2184 14 1 2.4324 4.5052 2.1990 15 6 2.8600 6.2757 3.3504 16 7 3.3733 7.4776 3.3270 17 14 2.0103 5.6529 4.8930 18 1 3.0216 5.0846 5.8200 19 1 1.3057 6.7780 5.5586 20 1 1.0280 4.6012 4.5268 21 6 1.8650 3.5093 0.0002 22 17 0.8552 4.9214 0.0010 23 7 1.3139 2.3120 0.0001 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 4.0206 0.3617 -0.0005 28 1 5.1343 2.5763 -0.0110 29 1 4.7791 4.7935 -1.9494 30 1 5.7793 7.0591 -1.8686 31 1 5.4251 8.4821 0.1089 32 1 3.3126 8.0463 4.1104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245877685.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:25 Heat of formation + Delta-G solvation = 25.861023 kcal Electronic energy + Delta-G solvation = -20302.360995 eV Core-core repulsion = 17061.254995 eV Total energy + Delta-G solvation = -3241.105999 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24190 -38.39883 -37.34720 -35.77041 -33.73969 -32.69729 -31.38978 -30.35098 -28.66374 -26.92452 -25.73200 -23.21285 -22.93596 -21.41691 -20.57236 -18.18611 -17.56245 -16.86032 -15.96114 -15.77317 -15.32071 -14.60843 -14.40530 -14.31814 -14.11957 -13.33948 -13.14007 -12.88341 -12.45930 -12.16091 -11.86336 -11.68205 -11.58782 -11.25651 -11.12795 -10.97592 -10.54245 -10.46244 -10.34643 -10.05089 -9.51598 -9.40628 -9.33000 -8.37276 -8.01202 -7.64743 -7.37232 -6.52441 -4.60594 1.39965 1.60795 2.46069 2.65693 2.90469 3.04163 3.08944 3.17164 3.33192 3.88195 4.06942 4.65661 4.89469 5.26521 5.34162 5.37127 5.42312 5.52275 5.71932 5.80611 5.84590 6.02475 6.11048 6.34813 6.50199 6.55568 6.74100 6.81081 7.00315 7.21507 7.41484 7.49041 7.63439 7.93895 8.04805 8.14421 8.53899 8.83490 10.00016 10.18251 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.007499 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.192414 B = 3732.938732 C = 4808.538421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.311 6.311 3 C 0.307 3.693 4 C -0.186 4.186 5 C -0.041 4.041 6 C -0.034 4.034 7 C -0.241 4.241 8 C -0.026 4.026 9 C -0.322 4.322 10 C 0.136 3.864 11 N -0.480 5.480 12 C 0.278 3.722 13 C -0.405 4.405 14 H 0.082 0.918 15 C 0.071 3.929 16 N -0.704 5.704 17 Si 0.897 3.103 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.258 1.258 21 C 0.213 3.787 22 Cl -0.013 7.013 23 N -0.539 5.539 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 -8.454 -3.830 9.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.128 3.872 4 C -0.207 4.207 5 C -0.066 4.066 6 C -0.038 4.038 7 C -0.246 4.246 8 C -0.050 4.050 9 C -0.345 4.345 10 C -0.033 4.033 11 N -0.191 5.191 12 C 0.155 3.845 13 C -0.434 4.434 14 H 0.100 0.900 15 C -0.156 4.156 16 N -0.324 5.324 17 Si 0.721 3.279 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.182 1.182 21 C 0.050 3.950 22 Cl 0.016 6.984 23 N -0.264 5.264 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.157 0.843 28 H 0.163 0.837 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.032 -7.956 -2.920 9.000 hybrid contribution 0.238 -0.490 -0.067 0.549 sum -2.793 -8.446 -2.986 9.384 Atomic orbital electron populations 1.22781 0.77746 1.02316 1.02536 1.86170 1.22521 1.24590 1.88623 1.19485 0.88994 0.83537 0.95143 1.20933 0.91521 0.99388 1.08847 1.21581 1.00486 0.89928 0.94609 1.19238 0.90448 0.94866 0.99258 1.18960 1.11624 0.94285 0.99754 1.20807 0.93912 0.95007 0.95294 1.21170 1.13412 0.97845 1.02056 1.22616 0.93467 0.97592 0.89670 1.68778 1.10888 1.14912 1.24565 1.18387 0.89507 0.86511 0.90061 1.19547 1.23526 1.03418 0.96939 0.90009 1.26081 0.94770 0.94359 1.00365 1.70108 1.28213 1.05592 1.28519 0.86437 0.80307 0.79895 0.81245 1.19225 1.19791 1.18201 1.21631 0.88711 0.86741 0.97909 1.98405 1.69241 1.34818 1.95924 1.66366 1.41602 0.97980 1.20475 0.92376 0.92501 0.89079 0.84253 0.83735 0.88678 0.88657 0.86379 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.37 101.05 1.05 1.56 16 2 O -0.31 -4.77 10.47 -18.43 -0.19 -4.96 16 3 C 0.31 5.34 7.49 -16.98 -0.13 5.21 16 4 C -0.19 -2.95 10.02 -39.33 -0.39 -3.34 16 5 C -0.04 -0.70 9.90 -38.90 -0.39 -1.09 16 6 C -0.03 -0.70 4.51 -104.69 -0.47 -1.17 16 7 C -0.24 -5.49 4.73 -104.08 -0.49 -5.98 16 8 C -0.03 -0.55 9.89 -38.98 -0.39 -0.93 16 9 C -0.32 -6.81 10.10 -39.23 -0.40 -7.21 16 10 C 0.14 3.13 11.17 -17.48 -0.20 2.94 16 11 N -0.48 -12.61 7.87 -10.90 -0.09 -12.69 16 12 C 0.28 7.13 6.07 -84.71 -0.51 6.62 16 13 C -0.40 -10.34 7.40 -37.92 -0.28 -10.62 16 14 H 0.08 2.07 5.75 -52.49 -0.30 1.77 16 15 C 0.07 1.76 5.49 -17.32 -0.10 1.67 16 16 N -0.70 -18.05 11.48 55.56 0.64 -17.41 16 17 Si 0.90 18.59 29.57 -169.99 -5.03 13.57 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 21 C 0.21 4.42 6.16 -16.97 -0.10 4.31 16 22 Cl -0.01 -0.27 26.18 -51.86 -1.36 -1.63 16 23 N -0.54 -10.39 9.16 -10.03 -0.09 -10.48 16 24 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 25 H 0.06 0.71 8.10 -51.93 -0.42 0.28 16 26 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.14 1.77 8.06 -52.48 -0.42 1.34 16 28 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 32 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 LS Contribution 298.03 15.07 4.49 4.49 Total: -1.00 -28.43 298.03 -7.23 -35.67 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -2.81 Total: 1.48 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -2.79 Total: -8.04 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.46 Total: -40.58 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.19 Total: -4.96 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.36 Total: -1.63 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.43 -7.23 -35.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245877685.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.529 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds