Wall clock time and date at job start Tue Mar 31 2020 06:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35579 * 116.99839 * 2 1 4 4 C 1.39157 * 119.50837 * 180.02562 * 3 2 1 5 5 C 1.37999 * 119.31401 * 179.74034 * 4 3 2 6 6 C 1.40273 * 118.36224 * 0.50384 * 5 4 3 7 7 C 1.47684 * 120.51202 * 179.75181 * 6 5 4 8 8 C 1.39764 * 120.65607 * 64.72237 * 7 6 5 9 9 C 1.38329 * 118.47544 * 180.02562 * 8 7 6 10 10 C 1.39087 * 119.73321 * 0.02562 * 9 8 7 11 11 N 1.31273 * 121.36423 * 359.97438 * 10 9 8 12 12 C 1.33719 * 121.62978 * 0.02562 * 11 10 9 13 13 C 1.40750 * 119.94224 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00111 * 175.52408 * 13 12 11 15 15 C 1.40128 * 120.00017 * 355.52041 * 13 12 11 16 16 N 1.30712 * 119.99989 * 6.62591 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 186.62854 * 15 13 12 18 18 H 1.48496 * 109.47153 * 94.98065 * 17 15 13 19 19 H 1.48503 * 109.47181 * 214.98185 * 17 15 13 20 20 H 1.48499 * 109.47218 * 334.97786 * 17 15 13 21 21 C 1.39809 * 118.97112 * 359.47894 * 6 5 4 22 22 Cl 1.73598 * 119.70728 * 180.25161 * 21 6 5 23 23 N 1.31807 * 120.57452 * 0.27527 * 21 6 5 24 24 H 1.09001 * 109.47606 * 300.00179 * 1 2 3 25 25 H 1.09001 * 109.46997 * 60.00583 * 1 2 3 26 26 H 1.09008 * 109.47265 * 179.97438 * 1 2 3 27 27 H 1.08005 * 120.34341 * 359.97438 * 4 3 2 28 28 H 1.07998 * 120.81744 * 180.27465 * 5 4 3 29 29 H 1.08000 * 120.76177 * 0.02562 * 8 7 6 30 30 H 1.07990 * 120.13366 * 179.97438 * 9 8 7 31 31 H 1.08004 * 119.31668 * 179.72112 * 10 9 8 32 32 H 0.97002 * 119.99907 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0444 1.2080 0.0000 4 6 3.4346 1.2690 -0.0005 5 6 4.0569 2.5007 -0.0060 6 6 3.2557 3.6521 0.0000 7 6 3.8718 4.9943 0.0001 8 6 4.6308 5.4301 -1.0896 9 6 5.1877 6.6954 -1.0416 10 6 4.9834 7.4970 0.0766 11 7 4.2690 7.0792 1.0955 12 6 3.7059 5.8664 1.1068 13 6 2.9472 5.4544 2.2184 14 1 2.4324 4.5052 2.1990 15 6 2.8600 6.2757 3.3504 16 7 3.3733 7.4776 3.3270 17 14 2.0103 5.6529 4.8930 18 1 3.0216 5.0846 5.8200 19 1 1.3057 6.7780 5.5586 20 1 1.0280 4.6012 4.5268 21 6 1.8650 3.5093 0.0002 22 17 0.8552 4.9214 0.0010 23 7 1.3139 2.3120 0.0001 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 4.0206 0.3617 -0.0005 28 1 5.1343 2.5763 -0.0110 29 1 4.7791 4.7935 -1.9494 30 1 5.7793 7.0591 -1.8686 31 1 5.4251 8.4821 0.1089 32 1 3.3126 8.0463 4.1104 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245877685.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:25 Heat of formation + Delta-G solvation = 8.361006 kcal Electronic energy + Delta-G solvation = -20303.119852 eV Core-core repulsion = 17061.254995 eV Total energy + Delta-G solvation = -3241.864857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61684 -40.01968 -38.75498 -37.30513 -35.52874 -34.22753 -32.83808 -32.11429 -30.16223 -28.14659 -27.46922 -24.72809 -24.31618 -23.15566 -22.18704 -19.47812 -19.34606 -18.24897 -17.59960 -17.05030 -16.89824 -16.10475 -16.03978 -15.95330 -15.34411 -14.74592 -14.65535 -14.32373 -14.09086 -13.89892 -13.39130 -13.07967 -12.87029 -12.81387 -12.78064 -12.57390 -12.16657 -12.02225 -11.84747 -11.69305 -11.22012 -10.91435 -10.76721 -10.06220 -9.65333 -9.42839 -8.99258 -8.30465 -6.44585 -0.02854 0.20308 0.89638 0.98815 1.20381 1.35093 1.46327 1.50284 2.13828 2.18241 2.64794 2.85466 3.52543 3.83308 3.91175 4.18197 4.20319 4.35025 4.40500 4.42617 4.47959 4.57853 4.76777 4.81171 4.92502 5.02656 5.19025 5.26731 5.35180 5.51840 5.73310 5.91594 6.14500 6.19262 6.32793 6.63393 6.74538 7.02238 8.22353 8.42043 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014332 B = 0.007499 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.192414 B = 3732.938732 C = 4808.538421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.309 6.309 3 C 0.304 3.696 4 C -0.171 4.171 5 C -0.034 4.034 6 C -0.060 4.060 7 C -0.237 4.237 8 C -0.034 4.034 9 C -0.310 4.310 10 C 0.112 3.888 11 N -0.520 5.520 12 C 0.256 3.744 13 C -0.430 4.430 14 H 0.075 0.925 15 C 0.033 3.967 16 N -0.743 5.743 17 Si 0.958 3.042 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.264 1.264 21 C 0.197 3.803 22 Cl -0.032 7.032 23 N -0.552 5.552 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.130 0.870 27 H 0.180 0.820 28 H 0.168 0.832 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.136 0.864 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -10.760 -4.519 11.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.216 6.216 3 C 0.125 3.875 4 C -0.191 4.191 5 C -0.059 4.059 6 C -0.065 4.065 7 C -0.242 4.242 8 C -0.058 4.058 9 C -0.333 4.333 10 C -0.054 4.054 11 N -0.232 5.232 12 C 0.132 3.868 13 C -0.460 4.460 14 H 0.093 0.907 15 C -0.190 4.190 16 N -0.365 5.365 17 Si 0.779 3.221 18 H -0.185 1.185 19 H -0.188 1.188 20 H -0.188 1.188 21 C 0.035 3.965 22 Cl -0.004 7.004 23 N -0.278 5.278 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.149 0.851 27 H 0.197 0.803 28 H 0.186 0.814 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.407 -10.255 -3.633 11.143 hybrid contribution 0.070 0.067 -0.033 0.103 sum -2.336 -10.188 -3.666 11.077 Atomic orbital electron populations 1.23039 0.76146 1.04738 1.01881 1.86192 1.24063 1.23240 1.88141 1.19916 0.89901 0.83623 0.94095 1.21326 0.91130 1.00264 1.06354 1.21844 1.01418 0.89314 0.93333 1.19290 0.90692 0.94995 1.01487 1.19173 1.10894 0.94972 0.99148 1.21193 0.93399 0.95470 0.95766 1.21520 1.12341 0.97440 1.01982 1.23026 0.93605 0.98818 0.89976 1.68700 1.12297 1.15846 1.26353 1.18695 0.89901 0.86995 0.91174 1.19592 1.24873 1.03605 0.97966 0.90702 1.26772 0.95109 0.94356 1.02741 1.70182 1.30118 1.06660 1.29518 0.85539 0.79232 0.79297 0.77989 1.18466 1.18838 1.18806 1.21581 0.88670 0.86811 0.99396 1.98388 1.69781 1.36057 1.96151 1.66315 1.42242 0.98047 1.21208 0.93361 0.92843 0.85149 0.80304 0.81424 0.85652 0.85485 0.84686 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.37 113.37 1.18 1.99 16 2 O -0.31 -8.55 10.47 -88.87 -0.93 -9.48 16 3 C 0.30 9.84 7.49 84.83 0.64 10.48 16 4 C -0.17 -4.81 10.02 22.43 0.22 -4.58 16 5 C -0.03 -1.08 9.90 22.71 0.22 -0.86 16 6 C -0.06 -2.43 4.51 -19.91 -0.09 -2.52 16 7 C -0.24 -10.69 4.73 -19.51 -0.09 -10.78 16 8 C -0.03 -1.38 9.89 22.66 0.22 -1.15 16 9 C -0.31 -12.59 10.10 22.50 0.23 -12.36 16 10 C 0.11 5.18 11.17 84.98 0.95 6.13 16 11 N -0.52 -27.86 7.87 -188.40 -1.48 -29.35 16 12 C 0.26 13.36 6.07 40.37 0.25 13.61 16 13 C -0.43 -22.55 7.40 23.34 0.17 -22.37 16 14 H 0.07 3.90 5.75 -2.91 -0.02 3.89 16 15 C 0.03 1.69 5.49 85.32 0.47 2.16 16 16 N -0.74 -39.31 11.48 21.86 0.25 -39.06 16 17 Si 0.96 38.93 29.57 68.60 2.03 40.96 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 21 C 0.20 8.15 6.16 85.08 0.52 8.67 16 22 Cl -0.03 -1.40 26.18 -2.72 -0.07 -1.47 16 23 N -0.55 -20.77 9.16 -298.50 -2.73 -23.50 16 24 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 25 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 26 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.18 3.61 8.06 -2.91 -0.02 3.58 16 28 H 0.17 4.50 8.06 -2.91 -0.02 4.47 16 29 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.13 4.28 8.06 -2.92 -0.02 4.26 16 31 H 0.14 5.51 8.06 -2.91 -0.02 5.48 16 32 H 0.28 13.41 8.29 -92.71 -0.77 12.65 16 Total: -1.00 -62.84 298.03 3.11 -59.73 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 1.16 Total: 13.77 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 4.89 Total: -11.60 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -3.97 Total: -91.90 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.93 Total: -9.48 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.07 Total: -1.47 kcal Total: -62.84 3.11 -59.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245877685.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.088 kcal (2) G-P(sol) polarization free energy of solvation -62.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds