Wall clock time and date at job start Tue Mar 31 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37049 * 120.00673 * 2 1 4 4 H 1.07996 * 120.00426 * 203.06905 * 3 2 1 5 5 C 1.38887 * 119.99579 * 23.05680 * 3 2 1 6 6 N 1.31484 * 119.99538 * 15.52756 * 5 3 2 7 7 Si 1.86796 * 120.00122 * 195.52409 * 5 3 2 8 8 H 1.48494 * 109.47118 * 90.00204 * 7 5 3 9 9 H 1.48491 * 109.47187 * 210.00521 * 7 5 3 10 10 H 1.48508 * 109.46921 * 330.00332 * 7 5 3 11 11 C 1.34780 * 119.99979 * 179.97438 * 2 1 3 12 12 S 1.71202 * 120.00016 * 179.97438 * 11 2 1 13 13 N 1.34778 * 119.99728 * 0.02562 * 11 2 1 14 14 C 1.40238 * 119.99770 * 176.60400 * 13 11 2 15 15 C 1.38984 * 120.05783 * 318.98023 * 14 13 11 16 16 F 1.35094 * 120.03433 * 0.02562 * 15 14 13 17 17 C 1.38341 * 119.93303 * 179.72884 * 15 14 13 18 18 C 1.38457 * 120.06257 * 0.57108 * 17 15 14 19 19 F 1.35099 * 119.94141 * 179.71997 * 18 17 15 20 20 C 1.38470 * 120.12512 * 359.70778 * 18 17 15 21 21 C 1.38340 * 120.05572 * 359.97438 * 20 18 17 22 22 F 1.35099 * 120.02521 * 180.02562 * 21 20 18 23 23 H 1.09007 * 109.47129 * 265.35701 * 1 2 3 24 24 H 1.09004 * 109.46965 * 25.34720 * 1 2 3 25 25 H 1.08996 * 109.47458 * 145.34902 * 1 2 3 26 26 H 0.96998 * 119.99421 * 179.97438 * 6 5 3 27 27 H 0.96989 * 119.99919 * 356.32142 * 13 11 2 28 28 H 1.08000 * 119.96583 * 180.27909 * 17 15 14 29 29 H 1.07995 * 119.97031 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1503 1.1868 0.0000 4 1 3.1655 1.2241 -0.3665 5 6 1.5391 2.3416 0.4711 6 7 0.4410 2.2579 1.1894 7 14 2.2773 4.0134 0.0843 8 1 1.7038 4.5258 -1.1859 9 1 1.9648 4.9592 1.1856 10 1 3.7502 3.8841 -0.0541 11 6 2.1388 -1.1672 0.0005 12 16 3.8508 -1.1672 -0.0001 13 7 1.4649 -2.3344 0.0005 14 6 2.1642 -3.5479 -0.0709 15 6 3.2565 -3.6728 -0.9211 16 9 3.6463 -2.6251 -1.6797 17 6 3.9480 -4.8693 -0.9854 18 6 3.5456 -5.9453 -0.2125 19 9 4.2192 -7.1144 -0.2813 20 6 2.4542 -5.8254 0.6312 21 6 1.7631 -4.6292 0.7043 22 9 0.6986 -4.5128 1.5281 23 1 -0.3634 -0.0832 1.0244 24 1 -0.3633 0.9288 -0.4400 25 1 -0.3634 -0.8453 -0.5843 26 1 0.0144 3.0644 1.5187 27 1 0.4965 -2.3352 0.0540 28 1 4.7996 -4.9656 -1.6426 29 1 2.1428 -6.6661 1.2333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247406445.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:35 Heat of formation + Delta-G solvation = -69.395205 kcal Electronic energy + Delta-G solvation = -20768.241935 eV Core-core repulsion = 16983.192282 eV Total energy + Delta-G solvation = -3785.049653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.040 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.14023 -50.00412 -49.82831 -40.73009 -39.36165 -36.72136 -34.11078 -31.54016 -30.31207 -29.21496 -27.25238 -24.51888 -23.99964 -22.72968 -20.59530 -19.54056 -19.39290 -18.54377 -18.21339 -17.24573 -17.17401 -16.95983 -16.73041 -16.54393 -16.33844 -16.01437 -15.93273 -15.68637 -15.36547 -15.18666 -13.96985 -13.73223 -13.56166 -13.40899 -13.22525 -12.88134 -12.79527 -12.77240 -12.37076 -12.15205 -11.88405 -11.38880 -10.60047 -9.91563 -9.31586 -8.81547 -8.55610 -7.73296 -6.26493 -0.32023 -0.09640 0.73487 1.31863 1.43451 1.49327 1.54699 1.95401 2.15855 2.26846 2.60549 2.72413 2.82167 3.17319 3.35222 3.63153 3.81562 4.10580 4.36508 4.53670 4.62141 4.70806 4.82046 4.89393 4.94228 5.22312 5.27335 5.44861 5.80658 6.16519 6.31121 6.86359 7.01422 8.23779 Molecular weight = 290.04amu Principal moments of inertia in cm(-1) A = 0.030557 B = 0.005054 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.100276 B = 5539.052218 C = 6194.161387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.353 5.353 3 C -0.320 4.320 4 H 0.110 0.890 5 C 0.016 3.984 6 N -0.858 5.858 7 Si 1.005 2.995 8 H -0.256 1.256 9 H -0.267 1.267 10 H -0.272 1.272 11 C 0.426 3.574 12 S -0.774 6.774 13 N -0.637 5.637 14 C 0.071 3.929 15 C 0.165 3.835 16 F -0.099 7.099 17 C -0.186 4.186 18 C 0.149 3.851 19 F -0.121 7.121 20 C -0.173 4.173 21 C 0.129 3.871 22 F -0.124 7.124 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.290 0.710 27 H 0.411 0.589 28 H 0.168 0.832 29 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 -11.429 -2.627 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.037 5.037 3 C -0.453 4.453 4 H 0.128 0.872 5 C -0.194 4.194 6 N -0.491 5.491 7 Si 0.826 3.174 8 H -0.180 1.180 9 H -0.191 1.191 10 H -0.197 1.197 11 C 0.067 3.933 12 S -0.642 6.642 13 N -0.269 5.269 14 C -0.029 4.029 15 C 0.139 3.861 16 F -0.077 7.077 17 C -0.207 4.207 18 C 0.127 3.873 19 F -0.099 7.099 20 C -0.193 4.193 21 C 0.106 3.894 22 F -0.103 7.103 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.252 0.748 28 H 0.185 0.815 29 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.408 -11.059 -2.508 11.841 hybrid contribution -1.006 1.038 0.080 1.448 sum -4.415 -10.021 -2.428 11.217 Atomic orbital electron populations 1.22033 0.78058 1.03014 1.02662 1.43085 1.06944 1.03226 1.50439 1.20505 1.01395 0.82616 1.40819 0.87221 1.26436 0.96245 1.03774 0.92900 1.70054 1.18700 1.32764 1.27541 0.84735 0.78815 0.74889 0.78951 1.18049 1.19142 1.19693 1.20956 0.92720 0.81601 0.98032 1.92369 0.96477 1.94998 1.80356 1.41328 1.08850 1.00971 1.75784 1.17643 0.98682 0.86147 1.00412 1.17043 0.93834 0.84167 0.91033 1.91887 1.89322 1.53604 1.72850 1.21076 1.03830 0.90795 1.05015 1.16599 0.91970 0.81605 0.97080 1.91547 1.78719 1.44585 1.95092 1.20941 0.96736 0.98155 1.03479 1.16633 0.88340 0.93550 0.90921 1.91516 1.52840 1.96509 1.69424 0.91184 0.89430 0.90914 0.89916 0.74802 0.81469 0.79554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.36 8.34 127.77 1.07 4.42 15 2 N -0.35 -16.91 3.01 -546.67 -1.65 -18.56 15 3 C -0.32 -16.64 9.00 84.03 0.76 -15.88 15 4 H 0.11 6.27 6.64 -2.91 -0.02 6.25 15 5 C 0.02 0.75 4.98 84.90 0.42 1.17 15 6 N -0.86 -39.66 10.92 21.66 0.24 -39.42 15 7 Si 1.01 38.16 29.58 68.60 2.03 40.19 15 8 H -0.26 -9.10 7.11 99.48 0.71 -8.40 15 9 H -0.27 -9.60 7.11 99.48 0.71 -8.89 15 10 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 11 C 0.43 20.49 7.14 179.05 1.28 21.77 15 12 S -0.77 -42.73 23.02 -56.49 -1.30 -44.03 15 13 N -0.64 -24.61 5.02 -189.57 -0.95 -25.56 15 14 C 0.07 2.50 5.98 38.15 0.23 2.72 15 15 C 0.16 5.99 6.01 22.47 0.14 6.13 15 16 F -0.10 -4.40 12.66 44.97 0.57 -3.83 15 17 C -0.19 -5.27 10.00 22.35 0.22 -5.05 15 18 C 0.15 3.56 7.30 22.38 0.16 3.72 15 19 F -0.12 -2.66 17.26 44.97 0.78 -1.88 15 20 C -0.17 -3.90 10.00 22.35 0.22 -3.68 15 21 C 0.13 3.66 7.31 22.47 0.16 3.82 15 22 F -0.12 -3.46 17.04 44.97 0.77 -2.70 15 23 H 0.07 2.74 7.87 -2.38 -0.02 2.72 15 24 H 0.09 3.49 6.75 -2.39 -0.02 3.47 15 25 H 0.07 2.23 6.68 -2.39 -0.02 2.22 15 26 H 0.29 12.32 8.31 -92.71 -0.77 11.55 15 27 H 0.41 13.34 6.67 -92.72 -0.62 12.72 15 28 H 0.17 4.08 8.06 -2.91 -0.02 4.06 15 29 H 0.19 2.89 8.06 -2.91 -0.02 2.86 15 Total: -1.00 -64.09 274.91 5.75 -58.33 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.61 Total: 18.30 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 4.66 Total: 19.15 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -2.36 Total: -83.54 kcal Atomic # 9 Polarization: -10.52 SS G_CDS: 2.11 Total: -8.40 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Atomic # 16 Polarization: -42.73 SS G_CDS: -1.30 Total: -44.03 kcal Total: -64.09 5.75 -58.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247406445.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.064 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds