Wall clock time and date at job start Tue Mar 31 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36941 * 119.99749 * 2 1 4 4 H 1.08011 * 119.99748 * 142.98933 * 3 2 1 5 5 C 1.38985 * 120.00142 * 322.98618 * 3 2 1 6 6 N 1.31406 * 119.99834 * 358.52597 * 5 3 2 7 7 Si 1.86798 * 119.99848 * 178.52495 * 5 3 2 8 8 H 1.48506 * 109.47047 * 60.00533 * 7 5 3 9 9 H 1.48501 * 109.47219 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47480 * 300.00212 * 7 5 3 11 11 C 1.34779 * 120.00009 * 179.97438 * 2 1 3 12 12 O 1.21658 * 119.99489 * 184.81987 * 11 2 1 13 13 C 1.47243 * 120.00159 * 4.82286 * 11 2 1 14 14 C 1.36419 * 122.56727 * 174.89710 * 13 11 2 15 15 S 1.71015 * 108.98280 * 180.02562 * 14 13 11 16 16 C 1.75968 * 90.63079 * 359.97438 * 15 14 13 17 17 C 1.47891 * 125.21719 * 179.97438 * 16 15 14 18 18 C 1.39654 * 120.12097 * 359.75020 * 17 16 15 19 19 N 1.31958 * 119.85085 * 180.29479 * 18 17 16 20 20 C 1.32239 * 120.10451 * 359.95761 * 19 18 17 21 21 C 1.38455 * 120.24924 * 0.04253 * 20 19 18 22 22 N 1.31989 * 120.15094 * 359.97438 * 21 20 19 23 23 N 1.29788 * 109.56516 * 0.24338 * 16 15 14 24 24 H 1.08999 * 109.46958 * 236.67575 * 1 2 3 25 25 H 1.08993 * 109.47129 * 356.67672 * 1 2 3 26 26 H 1.08998 * 109.46997 * 116.68076 * 1 2 3 27 27 H 0.96995 * 119.99721 * 179.97438 * 6 5 3 28 28 H 1.08004 * 125.50688 * 0.05329 * 14 13 11 29 29 H 1.07996 * 120.07317 * 0.30056 * 18 17 16 30 30 H 1.07998 * 119.87484 * 180.02562 * 20 19 18 31 31 H 1.08005 * 119.92793 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0665 1.2802 0.5631 5 6 1.6647 2.2683 -0.7246 6 7 0.5648 2.1450 -1.4329 7 14 2.5766 3.8983 -0.6914 8 1 3.9538 3.7057 -1.2127 9 1 1.8600 4.8838 -1.5403 10 1 2.6414 4.4011 0.7044 11 6 2.1389 -1.1672 0.0005 12 8 3.3522 -1.1689 0.0891 13 6 1.4066 -2.4402 -0.1061 14 6 2.0388 -3.6443 -0.2128 15 16 0.8636 -4.8825 -0.3152 16 6 -0.4280 -3.6924 -0.2063 17 6 -1.8745 -3.9993 -0.2273 18 6 -2.3087 -5.3213 -0.3460 19 7 -3.6007 -5.5886 -0.3700 20 6 -4.4828 -4.6075 -0.2810 21 6 -4.0570 -3.2953 -0.1632 22 7 -2.7671 -3.0166 -0.1385 23 7 0.0835 -2.5034 -0.1105 24 1 -0.3633 -0.5646 0.8587 25 1 -0.3633 1.0259 0.0596 26 1 -0.3633 -0.4614 -0.9182 27 1 0.2262 2.9005 -1.9383 28 1 3.1086 -3.7918 -0.2294 29 1 -1.5888 -6.1231 -0.4180 30 1 -5.5394 -4.8305 -0.3006 31 1 -4.7820 -2.4979 -0.0912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251590486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:24 Heat of formation + Delta-G solvation = 85.852013 kcal Electronic energy + Delta-G solvation = -19839.415157 eV Core-core repulsion = 16635.247019 eV Total energy + Delta-G solvation = -3204.168137 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.058 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17327 -39.70547 -37.49154 -34.70982 -34.46548 -32.61283 -31.60245 -29.53836 -26.75382 -25.86720 -25.11700 -24.63325 -23.31370 -20.91447 -19.11642 -18.17439 -17.27168 -17.17185 -16.73651 -16.41945 -15.38698 -15.29505 -14.95700 -14.53601 -14.31238 -13.89165 -13.38513 -13.20150 -12.91848 -12.56049 -11.93268 -11.73433 -11.60436 -11.42978 -11.29410 -11.12403 -10.82212 -10.44879 -10.37428 -10.05032 -9.41856 -9.32640 -9.28843 -8.84232 -8.61420 -8.31550 -7.46929 -6.32833 -3.99849 0.00448 0.84540 1.20147 1.25095 1.75182 2.63951 3.22223 3.24360 3.28525 3.59655 3.61965 4.00382 4.10512 4.16821 4.34704 4.38589 4.79415 4.95104 5.01270 5.15609 5.20741 5.28514 5.59016 5.77262 6.05420 6.33338 6.97281 7.02987 7.10068 7.46263 7.52702 7.58329 7.83397 8.22501 8.51557 9.12526 9.35812 9.96722 10.68469 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.004807 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.100779 B = 5823.618814 C = 7045.689991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.414 5.414 3 C -0.305 4.305 4 H 0.095 0.905 5 C 0.036 3.964 6 N -0.868 5.868 7 Si 0.931 3.069 8 H -0.271 1.271 9 H -0.283 1.283 10 H -0.271 1.271 11 C 0.504 3.496 12 O -0.586 6.586 13 C 0.044 3.956 14 C -0.219 4.219 15 S 0.155 5.845 16 C 0.057 3.943 17 C 0.162 3.838 18 C 0.065 3.935 19 N -0.432 5.432 20 C 0.045 3.955 21 C 0.063 3.937 22 N -0.398 5.398 23 N -0.375 5.375 24 H 0.033 0.967 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.271 0.729 28 H 0.190 0.810 29 H 0.169 0.831 30 H 0.174 0.826 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 -13.925 1.343 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.130 5.130 3 C -0.434 4.434 4 H 0.113 0.887 5 C -0.169 4.169 6 N -0.506 5.506 7 Si 0.757 3.243 8 H -0.196 1.196 9 H -0.208 1.208 10 H -0.197 1.197 11 C 0.290 3.710 12 O -0.472 6.472 13 C -0.093 4.093 14 C -0.361 4.361 15 S 0.410 5.590 16 C -0.219 4.219 17 C 0.020 3.980 18 C -0.098 4.098 19 N -0.145 5.145 20 C -0.115 4.115 21 C -0.099 4.099 22 N -0.114 5.114 23 N -0.091 5.091 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.208 0.792 29 H 0.186 0.814 30 H 0.191 0.809 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.798 -14.346 1.202 17.415 hybrid contribution 0.705 1.633 -0.114 1.782 sum -9.093 -12.714 1.088 15.669 Atomic orbital electron populations 1.21701 0.79727 1.02291 0.99041 1.43450 1.06441 1.03961 1.59108 1.19585 1.08419 0.87110 1.28299 0.88718 1.25564 0.96343 1.00438 0.94554 1.69928 1.20358 1.32211 1.28061 0.85934 0.79587 0.80324 0.78458 1.19568 1.20795 1.19658 1.17135 0.86348 0.81993 0.85509 1.90626 1.12860 1.86301 1.57384 1.21246 0.87262 0.96554 1.04199 1.26837 1.06055 0.94985 1.08232 1.83266 0.97256 1.11591 1.66907 1.25337 0.95447 0.91229 1.09935 1.19571 0.90224 0.90662 0.97511 1.23595 0.93727 0.95318 0.97115 1.68451 1.01745 1.35673 1.08667 1.23907 1.00959 0.90176 0.96491 1.23954 0.92889 0.97512 0.95518 1.68601 1.01754 1.34476 1.06530 1.67442 1.10540 1.21136 1.09943 0.94870 0.89603 0.93236 0.91913 0.79249 0.81361 0.80926 0.80628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.93 7.76 59.85 0.46 3.40 16 2 N -0.41 -11.50 2.97 -123.49 -0.37 -11.87 16 3 C -0.31 -8.80 9.01 -14.99 -0.14 -8.94 16 4 H 0.10 2.78 7.63 -52.48 -0.40 2.38 16 5 C 0.04 0.98 5.20 -17.46 -0.09 0.89 16 6 N -0.87 -23.94 10.87 55.50 0.60 -23.34 16 7 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 8 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 C 0.50 13.47 7.59 -12.60 -0.10 13.37 16 12 O -0.59 -16.93 16.53 5.23 0.09 -16.84 16 13 C 0.04 0.96 6.55 -84.59 -0.55 0.41 16 14 C -0.22 -3.80 10.64 30.08 0.32 -3.48 16 15 S 0.15 2.00 22.11 -107.50 -2.38 -0.38 16 16 C 0.06 0.93 7.39 -14.46 -0.11 0.82 16 17 C 0.16 2.34 6.75 -82.85 -0.56 1.78 16 18 C 0.07 0.74 10.78 -16.97 -0.18 0.56 16 19 N -0.43 -4.74 10.49 -12.73 -0.13 -4.88 16 20 C 0.05 0.40 11.22 -17.30 -0.19 0.21 16 21 C 0.06 0.66 11.22 -17.40 -0.20 0.46 16 22 N -0.40 -5.95 10.41 -9.65 -0.10 -6.06 16 23 N -0.38 -7.66 6.62 -7.89 -0.05 -7.71 16 24 H 0.03 0.79 7.10 -51.93 -0.37 0.42 16 25 H 0.09 2.28 5.98 -51.93 -0.31 1.97 16 26 H 0.05 1.28 7.21 -51.93 -0.37 0.90 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.19 3.06 8.02 -52.48 -0.42 2.64 16 29 H 0.17 1.49 7.28 -52.49 -0.38 1.10 16 30 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.18 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 292.62 15.07 4.41 4.41 Total: -1.00 -34.46 292.62 -6.52 -40.98 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -2.24 Total: 0.24 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -1.33 Total: 9.48 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.05 Total: -53.84 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.09 Total: -16.84 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.38 Total: -0.38 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.46 -6.52 -40.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251590486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.829 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds