Wall clock time and date at job start Tue Mar 31 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36941 * 119.99749 * 2 1 4 4 H 1.08011 * 119.99748 * 142.98933 * 3 2 1 5 5 C 1.38985 * 120.00142 * 322.98618 * 3 2 1 6 6 N 1.31406 * 119.99834 * 358.52597 * 5 3 2 7 7 Si 1.86798 * 119.99848 * 178.52495 * 5 3 2 8 8 H 1.48506 * 109.47047 * 60.00533 * 7 5 3 9 9 H 1.48501 * 109.47219 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47480 * 300.00212 * 7 5 3 11 11 C 1.34779 * 120.00009 * 179.97438 * 2 1 3 12 12 O 1.21658 * 119.99489 * 184.81987 * 11 2 1 13 13 C 1.47243 * 120.00159 * 4.82286 * 11 2 1 14 14 C 1.36419 * 122.56727 * 174.89710 * 13 11 2 15 15 S 1.71015 * 108.98280 * 180.02562 * 14 13 11 16 16 C 1.75968 * 90.63079 * 359.97438 * 15 14 13 17 17 C 1.47891 * 125.21719 * 179.97438 * 16 15 14 18 18 C 1.39654 * 120.12097 * 359.75020 * 17 16 15 19 19 N 1.31958 * 119.85085 * 180.29479 * 18 17 16 20 20 C 1.32239 * 120.10451 * 359.95761 * 19 18 17 21 21 C 1.38455 * 120.24924 * 0.04253 * 20 19 18 22 22 N 1.31989 * 120.15094 * 359.97438 * 21 20 19 23 23 N 1.29788 * 109.56516 * 0.24338 * 16 15 14 24 24 H 1.08999 * 109.46958 * 236.67575 * 1 2 3 25 25 H 1.08993 * 109.47129 * 356.67672 * 1 2 3 26 26 H 1.08998 * 109.46997 * 116.68076 * 1 2 3 27 27 H 0.96995 * 119.99721 * 179.97438 * 6 5 3 28 28 H 1.08004 * 125.50688 * 0.05329 * 14 13 11 29 29 H 1.07996 * 120.07317 * 0.30056 * 18 17 16 30 30 H 1.07998 * 119.87484 * 180.02562 * 20 19 18 31 31 H 1.08005 * 119.92793 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0665 1.2802 0.5631 5 6 1.6647 2.2683 -0.7246 6 7 0.5648 2.1450 -1.4329 7 14 2.5766 3.8983 -0.6914 8 1 3.9538 3.7057 -1.2127 9 1 1.8600 4.8838 -1.5403 10 1 2.6414 4.4011 0.7044 11 6 2.1389 -1.1672 0.0005 12 8 3.3522 -1.1689 0.0891 13 6 1.4066 -2.4402 -0.1061 14 6 2.0388 -3.6443 -0.2128 15 16 0.8636 -4.8825 -0.3152 16 6 -0.4280 -3.6924 -0.2063 17 6 -1.8745 -3.9993 -0.2273 18 6 -2.3087 -5.3213 -0.3460 19 7 -3.6007 -5.5886 -0.3700 20 6 -4.4828 -4.6075 -0.2810 21 6 -4.0570 -3.2953 -0.1632 22 7 -2.7671 -3.0166 -0.1385 23 7 0.0835 -2.5034 -0.1105 24 1 -0.3633 -0.5646 0.8587 25 1 -0.3633 1.0259 0.0596 26 1 -0.3633 -0.4614 -0.9182 27 1 0.2262 2.9005 -1.9383 28 1 3.1086 -3.7918 -0.2294 29 1 -1.5888 -6.1231 -0.4180 30 1 -5.5394 -4.8305 -0.3006 31 1 -4.7820 -2.4979 -0.0912 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251590486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:24 Heat of formation + Delta-G solvation = 60.078091 kcal Electronic energy + Delta-G solvation = -19840.532798 eV Core-core repulsion = 16635.247019 eV Total energy + Delta-G solvation = -3205.285778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.058 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.07507 -41.27840 -39.31030 -36.77544 -35.39214 -33.78199 -33.51213 -30.82760 -28.60469 -27.32354 -26.80028 -25.61133 -24.82794 -22.35338 -20.54092 -19.76121 -18.79163 -18.23266 -18.03934 -17.59614 -17.07862 -16.79007 -16.55521 -15.95414 -15.80115 -15.38422 -14.81200 -14.57486 -14.37018 -13.84524 -13.78033 -13.46763 -13.08305 -12.91606 -12.75705 -12.62019 -12.46969 -12.39684 -12.13636 -11.13761 -11.08678 -10.83035 -10.51101 -10.47027 -10.14827 -9.65652 -9.45171 -8.38249 -6.17679 -1.05133 -0.10444 0.06040 0.12602 0.42692 1.16187 1.38502 1.46750 1.51559 2.23666 2.43888 2.54788 2.75575 2.99418 3.09242 3.26336 3.30592 3.46205 3.80889 4.13411 4.17065 4.19036 4.38549 4.48842 4.74065 4.95984 5.04056 5.31205 5.33616 5.46114 6.10555 6.18569 6.34442 6.55760 6.75766 7.03746 7.30243 7.90285 8.63251 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.004807 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.100779 B = 5823.618814 C = 7045.689991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.147 3.853 2 N -0.437 5.437 3 C -0.350 4.350 4 H 0.075 0.925 5 C 0.000 4.000 6 N -0.892 5.892 7 Si 1.000 3.000 8 H -0.274 1.274 9 H -0.266 1.266 10 H -0.261 1.261 11 C 0.497 3.503 12 O -0.623 6.623 13 C 0.004 3.996 14 C -0.227 4.227 15 S 0.304 5.696 16 C 0.043 3.957 17 C 0.128 3.872 18 C 0.077 3.923 19 N -0.444 5.444 20 C 0.070 3.930 21 C 0.058 3.942 22 N -0.445 5.445 23 N -0.420 5.420 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.277 0.723 28 H 0.198 0.802 29 H 0.193 0.807 30 H 0.219 0.781 31 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 -16.273 1.035 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.153 5.153 3 C -0.478 4.478 4 H 0.093 0.907 5 C -0.203 4.203 6 N -0.529 5.529 7 Si 0.822 3.178 8 H -0.199 1.199 9 H -0.191 1.191 10 H -0.186 1.186 11 C 0.285 3.715 12 O -0.511 6.511 13 C -0.133 4.133 14 C -0.370 4.370 15 S 0.561 5.439 16 C -0.233 4.233 17 C -0.013 4.013 18 C -0.084 4.084 19 N -0.158 5.158 20 C -0.091 4.091 21 C -0.104 4.104 22 N -0.161 5.161 23 N -0.136 5.136 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.215 0.785 29 H 0.210 0.790 30 H 0.236 0.764 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.697 -16.739 0.894 20.440 hybrid contribution 1.100 2.047 -0.022 2.324 sum -10.598 -14.692 0.872 18.136 Atomic orbital electron populations 1.21361 0.78795 1.00772 0.98700 1.43659 1.07088 1.04313 1.60197 1.19650 1.08855 0.88886 1.30414 0.90702 1.26422 0.96933 1.03537 0.93393 1.70016 1.21234 1.33455 1.28226 0.84918 0.77934 0.75851 0.79106 1.19894 1.19074 1.18554 1.17837 0.86417 0.83598 0.83675 1.90554 1.14511 1.87479 1.58536 1.20557 0.88408 0.95444 1.08940 1.27187 1.07999 0.95965 1.05886 1.82641 0.92030 1.06332 1.62910 1.25864 0.97582 0.91669 1.08191 1.19605 0.89234 0.91858 1.00622 1.23840 0.94583 0.94409 0.95587 1.68598 1.01648 1.36161 1.09369 1.24637 1.02669 0.89043 0.92727 1.24525 0.91817 0.99339 0.94758 1.68477 1.03788 1.36111 1.07724 1.67286 1.09875 1.24027 1.12439 0.94149 0.91403 0.94377 0.91346 0.78525 0.78981 0.76432 0.77876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.87 7.76 127.77 0.99 8.86 16 2 N -0.44 -25.74 2.97 -662.83 -1.97 -27.70 16 3 C -0.35 -21.33 9.01 84.07 0.76 -20.57 16 4 H 0.08 4.70 7.63 -2.90 -0.02 4.68 16 5 C 0.00 -0.01 5.20 84.94 0.44 0.43 16 6 N -0.89 -50.75 10.87 21.67 0.24 -50.51 16 7 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 8 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 9 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 11 C 0.50 28.10 7.59 86.61 0.66 28.76 16 12 O -0.62 -38.05 16.53 -4.22 -0.07 -38.12 16 13 C 0.00 0.16 6.55 40.99 0.27 0.43 16 14 C -0.23 -7.77 10.64 67.40 0.72 -7.06 16 15 S 0.30 6.93 22.11 -56.49 -1.25 5.68 16 16 C 0.04 1.36 7.39 87.55 0.65 2.01 16 17 C 0.13 3.49 6.75 41.86 0.28 3.77 16 18 C 0.08 1.53 10.78 85.02 0.92 2.44 16 19 N -0.44 -8.11 10.49 -194.18 -2.04 -10.15 16 20 C 0.07 0.98 11.22 84.68 0.95 1.93 16 21 C 0.06 1.07 11.22 84.72 0.95 2.02 16 22 N -0.44 -12.97 10.41 -184.46 -1.92 -14.89 16 23 N -0.42 -17.59 6.62 -178.89 -1.18 -18.78 16 24 H 0.04 2.04 7.10 -2.39 -0.02 2.03 16 25 H 0.07 3.80 5.98 -2.39 -0.01 3.79 16 26 H 0.04 2.08 7.21 -2.39 -0.02 2.06 16 27 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.20 6.27 8.02 -2.91 -0.02 6.24 16 29 H 0.19 2.58 7.28 -2.91 -0.02 2.56 16 30 H 0.22 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -81.51 292.62 2.61 -78.91 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.19 Total: 6.48 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 7.58 Total: 23.02 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -6.87 Total: -122.03 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.07 Total: -38.12 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 6.93 SS G_CDS: -1.25 Total: 5.68 kcal Total: -81.51 2.61 -78.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251590486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.985 kcal (2) G-P(sol) polarization free energy of solvation -81.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds