Wall clock time and date at job start Tue Mar 31 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86799 * 120.00295 * 2 1 4 4 H 1.48507 * 109.47208 * 270.00018 * 3 2 1 5 5 H 1.48500 * 109.47122 * 29.99819 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00074 * 3 2 1 7 7 C 1.40358 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99430 * 179.97438 * 7 2 1 9 9 C 1.39899 * 120.00080 * 0.02562 * 7 2 1 10 10 N 1.32860 * 126.46731 * 359.97198 * 9 7 2 11 11 N 1.28677 * 109.00548 * 180.02562 * 10 9 7 12 12 C 1.31120 * 109.59210 * 0.02562 * 11 10 9 13 13 C 1.50702 * 126.05750 * 179.97438 * 12 11 10 14 14 H 1.09002 * 115.55346 * 154.36196 * 13 12 11 15 15 C 1.52995 * 117.51762 * 8.65152 * 13 12 11 16 16 C 1.52996 * 60.00563 * 252.52049 * 15 13 12 17 17 H 1.09001 * 117.52294 * 252.52478 * 16 15 13 18 18 C 1.50696 * 117.49655 * 107.48655 * 16 15 13 19 19 C 1.38246 * 119.98618 * 171.38321 * 18 16 15 20 20 C 1.38216 * 120.01497 * 180.02562 * 19 18 16 21 21 C 1.38357 * 119.98603 * 359.97165 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38217 * 119.98914 * 359.48757 * 23 21 20 25 25 O 1.34298 * 107.88726 * 0.22772 * 12 11 10 26 26 H 0.97002 * 119.99838 * 0.02562 * 1 2 3 27 27 H 1.09006 * 117.49909 * 145.03052 * 15 13 12 28 28 H 1.08999 * 117.49999 * 0.02562 * 15 13 12 29 29 H 1.08003 * 119.99321 * 359.97438 * 19 18 16 30 30 H 1.08003 * 120.00776 * 179.97438 * 20 19 18 31 31 H 1.08000 * 120.00661 * 179.71600 * 23 21 20 32 32 H 1.07996 * 119.99353 * 180.23044 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5378 1.4401 0.7000 7 6 2.0080 -1.2156 -0.0005 8 1 3.0879 -1.2155 -0.0010 9 6 1.3084 -2.4271 -0.0016 10 7 -0.0117 -2.5767 -0.0017 11 7 -0.2911 -3.8328 -0.0023 12 6 0.8193 -4.5302 -0.0021 13 6 0.9225 -6.0337 -0.0020 14 1 1.8392 -6.4420 -0.4273 15 6 -0.3674 -6.8307 -0.2064 16 6 0.2930 -6.7850 1.1729 17 1 0.7960 -7.6873 1.5207 18 6 -0.3831 -5.9648 2.2412 19 6 0.0645 -6.0279 3.5476 20 6 -0.5555 -5.2764 4.5280 21 6 -1.6240 -4.4603 4.2015 22 17 -2.4028 -3.5156 5.4322 23 6 -2.0748 -4.4016 2.8949 24 6 -1.4510 -5.1500 1.9145 25 8 1.8483 -3.6673 0.0038 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2993 -7.7635 -0.7663 28 1 -1.2909 -6.2677 -0.3414 29 1 0.8984 -6.6653 3.8024 30 1 -0.2060 -5.3261 5.5487 31 1 -2.9118 -3.7683 2.6402 32 1 -1.8005 -5.1014 0.8938 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257599752.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:23 Heat of formation + Delta-G solvation = 71.090394 kcal Electronic energy + Delta-G solvation = -20216.572142 eV Core-core repulsion = 16977.427435 eV Total energy + Delta-G solvation = -3239.144707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.74845 -39.35743 -37.00765 -35.85832 -34.09762 -33.72963 -30.72198 -30.13370 -29.43471 -26.29408 -23.54033 -23.33201 -22.27037 -21.48213 -20.44241 -19.48533 -17.68151 -17.05866 -15.91128 -15.52036 -15.30132 -14.95013 -14.57799 -14.13295 -13.83773 -13.29650 -13.17306 -13.14318 -12.70538 -11.81121 -11.64675 -11.63653 -11.40972 -11.24608 -11.05514 -10.96100 -10.58564 -10.51426 -10.43617 -10.35137 -10.16464 -9.70168 -9.59368 -8.73874 -8.55946 -8.09517 -7.80086 -6.87592 -4.88008 1.47958 1.72860 2.44319 2.74804 2.97467 3.02743 3.11740 3.70882 3.84882 4.09364 4.15262 4.46816 4.94645 5.10037 5.13287 5.18625 5.25266 5.30410 5.43280 5.66964 5.72809 5.83133 5.92840 6.08107 6.22658 6.34323 6.44315 6.57115 6.70052 6.76200 6.98167 6.99501 7.21794 7.36059 7.50884 8.02647 8.25491 8.51043 10.04738 10.51236 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.006175 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.079048 B = 4533.025250 C = 6057.564785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.721 5.721 2 C 0.073 3.927 3 Si 0.931 3.069 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.424 4.424 8 H 0.094 0.906 9 C 0.292 3.708 10 N -0.356 5.356 11 N -0.266 5.266 12 C 0.035 3.965 13 C -0.023 4.023 14 H 0.119 0.881 15 C -0.153 4.153 16 C -0.110 4.110 17 H 0.117 0.883 18 C -0.053 4.053 19 C -0.105 4.105 20 C -0.124 4.124 21 C -0.036 4.036 22 Cl -0.087 7.087 23 C -0.104 4.104 24 C -0.063 4.063 25 O -0.271 6.271 26 H 0.285 0.715 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 -9.303 4.824 10.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C -0.154 4.154 3 Si 0.754 3.246 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.459 4.459 8 H 0.113 0.887 9 C 0.108 3.892 10 N -0.210 5.210 11 N -0.117 5.117 12 C -0.174 4.174 13 C -0.043 4.043 14 H 0.137 0.863 15 C -0.190 4.190 16 C -0.130 4.130 17 H 0.135 0.865 18 C -0.053 4.053 19 C -0.123 4.123 20 C -0.143 4.143 21 C -0.062 4.062 22 Cl -0.058 7.058 23 C -0.123 4.123 24 C -0.082 4.082 25 O -0.159 6.159 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.511 -8.775 4.927 10.372 hybrid contribution 1.772 0.737 0.161 1.926 sum -0.739 -8.038 5.088 9.542 Atomic orbital electron populations 1.69923 1.07268 1.29460 1.27791 1.25925 0.95119 1.01042 0.93279 0.85929 0.80061 0.79092 0.79504 1.18994 1.19655 1.18246 1.18222 0.94729 0.85698 1.47294 0.88749 1.23718 0.89050 0.82952 0.93505 1.75717 1.10020 1.04050 1.31259 1.73955 1.24990 1.00629 1.12155 1.25167 0.82702 0.92518 1.17025 1.19662 0.98418 0.84286 1.01916 0.86334 1.23187 0.97117 1.01219 0.97444 1.21257 1.03425 0.99811 0.88503 0.86522 1.19116 0.95667 0.97395 0.93104 1.20783 0.99536 0.99839 0.92126 1.20827 0.95868 0.97641 0.99929 1.20893 0.97463 0.97815 0.90035 1.98333 1.80561 1.72159 1.54752 1.21012 1.01049 0.99623 0.90603 1.21361 0.94082 0.92879 0.99853 1.84658 1.37860 1.17325 1.76098 0.90401 0.87858 0.87150 0.85739 0.85645 0.85274 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.28 11.93 55.57 0.66 -18.62 16 2 C 0.07 1.84 5.50 -17.27 -0.10 1.75 16 3 Si 0.93 18.27 29.56 -169.99 -5.03 13.25 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 7 C -0.42 -11.48 9.46 -38.16 -0.36 -11.84 16 8 H 0.09 2.36 7.85 -52.49 -0.41 1.95 16 9 C 0.29 8.39 7.85 -16.49 -0.13 8.26 16 10 N -0.36 -10.36 10.52 30.64 0.32 -10.04 16 11 N -0.27 -6.80 8.26 32.67 0.27 -6.53 16 12 C 0.04 0.83 7.08 -12.58 -0.09 0.74 16 13 C -0.02 -0.39 6.33 -91.77 -0.58 -0.98 16 14 H 0.12 1.75 8.14 -51.93 -0.42 1.33 16 15 C -0.15 -2.13 9.49 -26.74 -0.25 -2.38 16 16 C -0.11 -1.61 6.04 -91.77 -0.55 -2.16 16 17 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 18 C -0.05 -0.89 5.04 -104.62 -0.53 -1.41 16 19 C -0.10 -1.62 9.74 -39.59 -0.39 -2.01 16 20 C -0.12 -1.95 9.83 -39.55 -0.39 -2.34 16 21 C -0.04 -0.61 6.32 -39.50 -0.25 -0.86 16 22 Cl -0.09 -1.35 28.96 -51.86 -1.50 -2.86 16 23 C -0.10 -1.91 9.83 -39.55 -0.39 -2.30 16 24 C -0.06 -1.17 6.99 -39.59 -0.28 -1.45 16 25 O -0.27 -7.27 10.90 3.01 0.03 -7.23 16 26 H 0.28 6.80 8.29 -40.82 -0.34 6.46 16 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.11 1.70 5.98 -51.93 -0.31 1.39 16 29 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.15 2.87 4.62 -52.49 -0.24 2.63 16 LS Contribution 296.29 15.07 4.47 4.47 Total: -1.00 -31.24 296.29 -7.69 -38.93 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -2.64 Total: 5.61 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -4.28 Total: -16.98 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 1.26 Total: -35.19 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: 0.03 Total: -7.23 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.50 Total: -2.86 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.24 -7.69 -38.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257599752.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.020 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds