Wall clock time and date at job start Tue Mar 31 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86799 * 120.00295 * 2 1 4 4 H 1.48507 * 109.47208 * 270.00018 * 3 2 1 5 5 H 1.48500 * 109.47122 * 29.99819 * 3 2 1 6 6 H 1.48499 * 109.47161 * 150.00074 * 3 2 1 7 7 C 1.40358 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99430 * 179.97438 * 7 2 1 9 9 C 1.39899 * 120.00080 * 0.02562 * 7 2 1 10 10 N 1.32860 * 126.46731 * 359.97198 * 9 7 2 11 11 N 1.28677 * 109.00548 * 180.02562 * 10 9 7 12 12 C 1.31120 * 109.59210 * 0.02562 * 11 10 9 13 13 C 1.50702 * 126.05750 * 179.97438 * 12 11 10 14 14 H 1.09002 * 115.55346 * 154.36196 * 13 12 11 15 15 C 1.52995 * 117.51762 * 8.65152 * 13 12 11 16 16 C 1.52996 * 60.00563 * 252.52049 * 15 13 12 17 17 H 1.09001 * 117.52294 * 252.52478 * 16 15 13 18 18 C 1.50696 * 117.49655 * 107.48655 * 16 15 13 19 19 C 1.38246 * 119.98618 * 171.38321 * 18 16 15 20 20 C 1.38216 * 120.01497 * 180.02562 * 19 18 16 21 21 C 1.38357 * 119.98603 * 359.97165 * 20 19 18 22 22 Cl 1.73599 * 120.01134 * 180.02562 * 21 20 19 23 23 C 1.38347 * 119.97107 * 0.28224 * 21 20 19 24 24 C 1.38217 * 119.98914 * 359.48757 * 23 21 20 25 25 O 1.34298 * 107.88726 * 0.22772 * 12 11 10 26 26 H 0.97002 * 119.99838 * 0.02562 * 1 2 3 27 27 H 1.09006 * 117.49909 * 145.03052 * 15 13 12 28 28 H 1.08999 * 117.49999 * 0.02562 * 15 13 12 29 29 H 1.08003 * 119.99321 * 359.97438 * 19 18 16 30 30 H 1.08003 * 120.00776 * 179.97438 * 20 19 18 31 31 H 1.08000 * 120.00661 * 179.71600 * 23 21 20 32 32 H 1.07996 * 119.99353 * 180.23044 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4378 2.6527 0.7000 6 1 3.5378 1.4401 0.7000 7 6 2.0080 -1.2156 -0.0005 8 1 3.0879 -1.2155 -0.0010 9 6 1.3084 -2.4271 -0.0016 10 7 -0.0117 -2.5767 -0.0017 11 7 -0.2911 -3.8328 -0.0023 12 6 0.8193 -4.5302 -0.0021 13 6 0.9225 -6.0337 -0.0020 14 1 1.8392 -6.4420 -0.4273 15 6 -0.3674 -6.8307 -0.2064 16 6 0.2930 -6.7850 1.1729 17 1 0.7960 -7.6873 1.5207 18 6 -0.3831 -5.9648 2.2412 19 6 0.0645 -6.0279 3.5476 20 6 -0.5555 -5.2764 4.5280 21 6 -1.6240 -4.4603 4.2015 22 17 -2.4028 -3.5156 5.4322 23 6 -2.0748 -4.4016 2.8949 24 6 -1.4510 -5.1500 1.9145 25 8 1.8483 -3.6673 0.0038 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2993 -7.7635 -0.7663 28 1 -1.2909 -6.2677 -0.3414 29 1 0.8984 -6.6653 3.8024 30 1 -0.2060 -5.3261 5.5487 31 1 -2.9118 -3.7683 2.6402 32 1 -1.8005 -5.1014 0.8938 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257599752.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:23 Heat of formation + Delta-G solvation = 50.480657 kcal Electronic energy + Delta-G solvation = -20217.465847 eV Core-core repulsion = 16977.427435 eV Total energy + Delta-G solvation = -3240.038412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.72446 -40.65383 -38.28991 -37.14706 -36.08557 -35.68929 -32.06054 -31.66601 -31.13673 -28.19339 -24.95788 -24.80517 -23.66209 -23.44386 -21.85131 -20.98801 -19.61414 -18.46094 -17.49782 -17.32432 -17.04794 -16.36972 -16.07985 -15.51999 -15.34331 -15.02020 -14.47949 -14.45862 -14.12701 -13.54846 -13.13519 -13.08422 -12.90055 -12.80645 -12.51478 -12.34103 -12.21948 -12.07864 -11.86018 -11.82925 -11.59157 -11.34696 -11.27968 -10.71681 -9.98131 -9.73343 -9.35403 -8.76274 -6.92273 0.15450 0.41474 0.96665 1.13495 1.35744 1.51984 1.55535 2.06264 2.23767 2.40622 2.57328 3.07535 3.17409 3.69156 3.85275 3.92509 3.95243 3.98289 4.14484 4.31580 4.44896 4.55207 4.71398 4.79124 4.88266 4.96213 5.06556 5.08870 5.20534 5.30436 5.38932 5.43168 5.67851 5.69849 5.92705 6.01597 6.24200 6.51642 8.19777 8.51399 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.006175 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.079048 B = 4533.025250 C = 6057.564785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.028 3.972 3 Si 1.016 2.984 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.249 1.249 7 C -0.454 4.454 8 H 0.106 0.894 9 C 0.259 3.741 10 N -0.400 5.400 11 N -0.289 5.289 12 C 0.055 3.945 13 C -0.058 4.058 14 H 0.148 0.852 15 C -0.133 4.133 16 C -0.091 4.091 17 H 0.165 0.835 18 C -0.070 4.070 19 C -0.101 4.101 20 C -0.126 4.126 21 C -0.048 4.048 22 Cl -0.079 7.079 23 C -0.130 4.130 24 C -0.081 4.081 25 O -0.287 6.287 26 H 0.293 0.707 27 H 0.150 0.850 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.117 0.883 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -10.767 5.530 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.194 4.194 3 Si 0.833 3.167 4 H -0.178 1.178 5 H -0.187 1.187 6 H -0.172 1.172 7 C -0.489 4.489 8 H 0.124 0.876 9 C 0.074 3.926 10 N -0.253 5.253 11 N -0.137 5.137 12 C -0.156 4.156 13 C -0.077 4.077 14 H 0.166 0.834 15 C -0.170 4.170 16 C -0.110 4.110 17 H 0.182 0.818 18 C -0.070 4.070 19 C -0.119 4.119 20 C -0.144 4.144 21 C -0.074 4.074 22 Cl -0.050 7.050 23 C -0.149 4.149 24 C -0.100 4.100 25 O -0.176 6.176 26 H 0.104 0.896 27 H 0.168 0.832 28 H 0.106 0.894 29 H 0.180 0.820 30 H 0.170 0.830 31 H 0.135 0.865 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.689 -10.269 5.631 11.732 hybrid contribution 1.128 1.036 -0.026 1.532 sum 0.439 -9.232 5.605 10.810 Atomic orbital electron populations 1.70024 1.09379 1.31136 1.28485 1.27151 0.95932 1.04642 0.91709 0.84712 0.78603 0.73237 0.80137 1.17756 1.18670 1.17165 1.18782 0.95541 0.86290 1.48300 0.87644 1.24248 0.89489 0.83985 0.94876 1.75628 1.10571 1.05875 1.33230 1.73906 1.25774 0.99813 1.14175 1.26602 0.81471 0.94933 1.12602 1.20167 1.01548 0.80325 1.05694 0.83393 1.23343 0.94368 1.01679 0.97641 1.21494 1.02146 0.99765 0.87549 0.81754 1.19501 0.95313 0.97458 0.94775 1.21249 0.99872 0.99497 0.91256 1.21229 0.94966 0.96734 1.01510 1.21061 0.98168 0.98403 0.89788 1.98326 1.80540 1.72043 1.54066 1.21065 1.01617 1.00450 0.91766 1.21343 0.95444 0.94080 0.99114 1.84657 1.39071 1.17468 1.76396 0.89573 0.83219 0.89400 0.81952 0.82966 0.86459 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.46 11.93 21.90 0.26 -42.20 16 2 C 0.03 1.43 5.50 85.39 0.47 1.90 16 3 Si 1.02 37.28 29.56 68.60 2.03 39.31 16 4 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 5 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 6 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 7 C -0.45 -25.29 9.46 23.19 0.22 -25.07 16 8 H 0.11 5.38 7.85 -2.91 -0.02 5.36 16 9 C 0.26 15.50 7.85 84.94 0.67 16.16 16 10 N -0.40 -24.43 10.52 -169.75 -1.79 -26.22 16 11 N -0.29 -15.38 8.26 -164.73 -1.36 -16.74 16 12 C 0.06 2.64 7.08 88.22 0.62 3.26 16 13 C -0.06 -1.85 6.33 -11.54 -0.07 -1.92 16 14 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 15 C -0.13 -3.34 9.49 30.59 0.29 -3.05 16 16 C -0.09 -2.31 6.04 -11.54 -0.07 -2.38 16 17 H 0.17 2.69 8.14 -2.39 -0.02 2.67 16 18 C -0.07 -2.26 5.04 -19.86 -0.10 -2.36 16 19 C -0.10 -2.84 9.74 22.27 0.22 -2.63 16 20 C -0.13 -3.74 9.83 22.29 0.22 -3.52 16 21 C -0.05 -1.64 6.32 22.32 0.14 -1.50 16 22 Cl -0.08 -2.45 28.96 -2.72 -0.08 -2.53 16 23 C -0.13 -4.99 9.83 22.29 0.22 -4.77 16 24 C -0.08 -3.08 6.99 22.27 0.16 -2.92 16 25 O -0.29 -15.74 10.90 -12.16 -0.13 -15.87 16 26 H 0.29 14.46 8.29 -92.71 -0.77 13.69 16 27 H 0.15 2.39 8.14 -2.38 -0.02 2.38 16 28 H 0.09 2.67 5.98 -2.39 -0.01 2.65 16 29 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 31 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.13 5.41 4.62 -2.91 -0.01 5.40 16 Total: -1.00 -73.14 296.29 3.08 -70.06 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 1.17 Total: 22.97 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 2.98 Total: -28.79 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -2.89 Total: -85.15 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.13 Total: -15.87 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -0.08 Total: -2.53 kcal Total: -73.14 3.08 -70.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257599752.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.540 kcal (2) G-P(sol) polarization free energy of solvation -73.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds