Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48506 * 109.47107 * 274.97765 * 3 2 1 5 5 H 1.48496 * 109.47355 * 34.97798 * 3 2 1 6 6 H 1.48508 * 109.47072 * 154.98166 * 3 2 1 7 7 C 1.40347 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00120 * 186.03091 * 7 2 1 9 9 C 1.39905 * 119.99697 * 6.03062 * 7 2 1 10 10 N 1.32851 * 126.47010 * 354.32491 * 9 7 2 11 11 N 1.28683 * 109.00829 * 179.70668 * 10 9 7 12 12 C 1.31131 * 109.58719 * 0.44530 * 11 10 9 13 13 C 1.50698 * 126.05440 * 179.82730 * 12 11 10 14 14 H 1.09001 * 115.55072 * 154.01820 * 13 12 11 15 15 C 1.53069 * 117.49800 * 8.28151 * 13 12 11 16 16 C 1.52999 * 59.98699 * 252.52174 * 15 13 12 17 17 H 1.08994 * 117.50300 * 107.50767 * 16 15 13 18 18 C 1.50701 * 117.49363 * 252.50077 * 16 15 13 19 19 C 1.38242 * 119.98641 * 188.74658 * 18 16 15 20 20 C 1.38212 * 120.01716 * 179.97438 * 19 18 16 21 21 C 1.38349 * 119.98547 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 120.01375 * 179.97438 * 21 20 19 23 23 C 1.38357 * 119.97227 * 359.97153 * 21 20 19 24 24 C 1.38211 * 119.98803 * 0.02562 * 23 21 20 25 25 O 1.34304 * 107.88647 * 359.55473 * 12 11 10 26 26 H 0.97007 * 120.00200 * 0.02562 * 1 2 3 27 27 H 1.08998 * 117.51707 * 145.03779 * 15 13 12 28 28 H 1.09009 * 117.49296 * 0.02562 * 15 13 12 29 29 H 1.08002 * 119.99012 * 359.97438 * 19 18 16 30 30 H 1.07999 * 120.00666 * 179.74222 * 20 19 18 31 31 H 1.08006 * 120.00299 * 180.02562 * 23 21 20 32 32 H 1.07996 * 119.99692 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3825 2.1072 -1.3949 5 1 1.4943 2.6200 0.8026 6 1 3.5865 1.4121 0.5921 7 6 2.0080 -1.2154 0.0005 8 1 3.0835 -1.2180 0.0988 9 6 1.3142 -2.4237 -0.1262 10 7 -0.0051 -2.5782 -0.1488 11 7 -0.2784 -3.8284 -0.2839 12 6 0.8353 -4.5180 -0.3430 13 6 0.9457 -6.0132 -0.4956 14 1 1.8663 -6.3721 -0.9558 15 6 -0.3404 -6.7908 -0.7858 16 6 0.3148 -6.8828 0.5938 17 1 -0.1798 -6.3736 1.4209 18 6 1.0133 -8.1704 0.9477 19 6 1.4642 -8.3799 2.2376 20 6 2.1045 -9.5607 2.5631 21 6 2.2947 -10.5330 1.5974 22 17 3.0994 -12.0162 2.0052 23 6 1.8432 -10.3229 0.3066 24 6 1.2030 -9.1416 -0.0176 25 8 1.8602 -3.6551 -0.2495 26 1 -0.4851 0.8401 -0.0004 27 1 -0.2663 -7.6615 -1.4373 28 1 -1.2659 -6.2206 -0.8666 29 1 1.3161 -7.6206 2.9913 30 1 2.4604 -9.7225 3.5698 31 1 1.9910 -11.0818 -0.4476 32 1 0.8501 -8.9776 -1.0250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257599756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = 41.450766 kcal Electronic energy + Delta-G solvation = -19044.619864 eV Core-core repulsion = 15804.189886 eV Total energy + Delta-G solvation = -3240.429977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.79216 -40.73095 -38.33602 -37.16987 -36.15528 -35.76261 -32.09175 -32.05488 -30.99675 -28.16794 -25.11838 -24.79950 -23.74847 -23.42634 -21.81479 -21.28351 -19.66683 -18.40354 -17.73526 -17.33317 -17.16648 -16.28731 -16.21738 -15.60352 -15.46461 -15.11617 -14.49840 -14.44063 -13.84863 -13.60476 -13.25237 -13.03798 -12.91827 -12.78910 -12.65893 -12.53740 -12.25640 -12.06278 -11.90896 -11.89370 -11.75192 -11.43207 -11.35987 -10.82195 -10.00958 -9.98551 -9.39143 -8.79994 -6.99004 0.06772 0.33142 0.89840 1.15731 1.37233 1.51097 1.58120 2.04245 2.13896 2.32674 2.54410 3.01779 3.08487 3.51722 3.77954 3.80396 3.93502 3.96222 3.99975 4.17619 4.35597 4.51905 4.63444 4.70927 4.78127 4.97248 5.02402 5.03626 5.10916 5.26031 5.30497 5.32834 5.56545 5.60091 5.81167 5.97997 6.17894 6.46625 8.16846 8.41458 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.036061 B = 0.002814 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.284254 B = 9946.640362 C =10379.569626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.026 3.974 3 Si 1.023 2.977 4 H -0.256 1.256 5 H -0.260 1.260 6 H -0.246 1.246 7 C -0.448 4.448 8 H 0.111 0.889 9 C 0.258 3.742 10 N -0.408 5.408 11 N -0.304 5.304 12 C 0.057 3.943 13 C -0.046 4.046 14 H 0.139 0.861 15 C -0.123 4.123 16 C -0.095 4.095 17 H 0.099 0.901 18 C -0.049 4.049 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.049 4.049 22 Cl -0.072 7.072 23 C -0.106 4.106 24 C -0.105 4.105 25 O -0.284 6.284 26 H 0.296 0.704 27 H 0.146 0.854 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.911 -17.030 1.450 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.197 4.197 3 Si 0.839 3.161 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.169 1.169 7 C -0.484 4.484 8 H 0.129 0.871 9 C 0.074 3.926 10 N -0.261 5.261 11 N -0.152 5.152 12 C -0.155 4.155 13 C -0.066 4.066 14 H 0.156 0.844 15 C -0.160 4.160 16 C -0.115 4.115 17 H 0.117 0.883 18 C -0.049 4.049 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.076 4.076 22 Cl -0.043 7.043 23 C -0.124 4.124 24 C -0.123 4.123 25 O -0.173 6.173 26 H 0.108 0.892 27 H 0.164 0.836 28 H 0.114 0.886 29 H 0.150 0.850 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.475 -16.765 1.515 17.188 hybrid contribution 1.378 0.527 0.237 1.494 sum 4.853 -16.238 1.752 17.038 Atomic orbital electron populations 1.70030 1.09603 1.31510 1.27935 1.27273 0.95954 1.04888 0.91546 0.84608 0.78697 0.72826 0.79939 1.18034 1.18382 1.16897 1.18883 0.96225 0.86242 1.47022 0.87137 1.24332 0.89226 0.84291 0.94768 1.75624 1.11126 1.05793 1.33592 1.73949 1.26268 1.00411 1.14609 1.26602 0.81506 0.94988 1.12432 1.19991 1.01286 0.79667 1.05666 0.84375 1.23342 0.94665 1.01154 0.96825 1.21158 1.02018 0.94569 0.93752 0.88324 1.19227 0.97763 0.93597 0.94321 1.21112 0.97962 0.97285 0.96521 1.21173 0.99283 0.92460 0.99993 1.21103 1.01415 0.89317 0.95747 1.98365 1.78349 1.33590 1.93999 1.21273 0.97801 0.98396 0.94972 1.21273 0.98352 0.92198 1.00491 1.84679 1.38850 1.18026 1.75784 0.89250 0.83586 0.88641 0.84965 0.83602 0.82742 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.04 11.96 21.90 0.26 -41.78 16 2 C 0.03 1.30 5.49 85.39 0.47 1.77 16 3 Si 1.02 36.22 29.57 68.60 2.03 38.25 16 4 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 5 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 6 H -0.25 -8.16 7.11 99.48 0.71 -7.45 16 7 C -0.45 -24.77 9.45 23.19 0.22 -24.55 16 8 H 0.11 5.54 7.86 -2.91 -0.02 5.52 16 9 C 0.26 15.57 7.85 84.94 0.67 16.24 16 10 N -0.41 -25.60 10.55 -169.75 -1.79 -27.39 16 11 N -0.30 -17.12 11.84 -164.71 -1.95 -19.07 16 12 C 0.06 2.82 8.00 88.21 0.71 3.53 16 13 C -0.05 -1.59 5.97 -11.52 -0.07 -1.66 16 14 H 0.14 4.12 8.14 -2.39 -0.02 4.10 16 15 C -0.12 -3.30 9.47 30.62 0.29 -3.01 16 16 C -0.10 -2.74 5.74 -11.54 -0.07 -2.81 16 17 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 18 C -0.05 -1.14 5.61 -19.86 -0.11 -1.25 16 19 C -0.11 -2.50 9.74 22.26 0.22 -2.28 16 20 C -0.11 -2.19 9.83 22.29 0.22 -1.98 16 21 C -0.05 -0.94 6.32 22.32 0.14 -0.80 16 22 Cl -0.07 -1.26 28.96 -2.72 -0.08 -1.34 16 23 C -0.11 -1.83 9.83 22.29 0.22 -1.61 16 24 C -0.11 -1.96 9.30 22.26 0.21 -1.75 16 25 O -0.28 -15.83 10.90 -12.27 -0.13 -15.97 16 26 H 0.30 14.28 8.29 -92.70 -0.77 13.51 16 27 H 0.15 2.60 6.18 -2.39 -0.01 2.58 16 28 H 0.10 2.99 7.90 -2.38 -0.02 2.97 16 29 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 31 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.16 2.17 6.02 -2.91 -0.02 2.16 16 Total: -1.00 -72.16 304.40 2.61 -69.55 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 1.17 Total: 17.93 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 3.11 Total: -20.17 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -3.48 Total: -88.25 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.13 Total: -15.97 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -72.16 2.61 -69.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257599756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.999 kcal (2) G-P(sol) polarization free energy of solvation -72.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds