Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29517 * 1 3 3 Si 1.86793 * 120.00213 * 2 1 4 4 H 1.48511 * 109.46976 * 240.00070 * 3 2 1 5 5 H 1.48495 * 109.47140 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47358 * 120.00470 * 3 2 1 7 7 C 1.46512 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99984 * 168.68622 * 7 2 1 9 9 C 1.40363 * 120.00018 * 348.68314 * 7 2 1 10 10 C 1.41357 * 120.24939 * 150.67345 * 9 7 2 11 11 C 1.36497 * 119.96840 * 179.97438 * 10 9 7 12 12 C 1.38649 * 120.50418 * 359.97438 * 11 10 9 13 13 C 1.39530 * 120.51301 * 359.97438 * 12 11 10 14 14 N 1.39650 * 119.99632 * 179.74254 * 13 12 11 15 15 C 1.39585 * 120.00291 * 144.27145 * 14 13 12 16 16 S 1.75882 * 125.24012 * 353.63751 * 15 14 13 17 17 C 1.75855 * 91.02664 * 179.97438 * 16 15 14 18 18 C 1.33271 * 109.74194 * 0.34086 * 17 16 15 19 19 C 1.34145 * 125.24475 * 173.93809 * 15 14 13 20 20 N 1.48428 * 122.63254 * 0.02562 * 19 15 14 21 21 O 1.31697 * 119.99781 * 179.97438 * 20 19 15 22 22 O 1.31696 * 120.00269 * 0.02562 * 20 19 15 23 23 C 1.38215 * 120.01255 * 0.02562 * 13 12 11 24 24 H 0.97007 * 119.99771 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.01711 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.74804 * 179.97438 * 11 10 9 27 27 H 1.08008 * 119.74311 * 180.02562 * 12 11 10 28 28 H 0.96996 * 119.99456 * 324.27332 * 14 13 12 29 29 H 1.08000 * 125.12803 * 180.10336 * 17 16 15 30 30 H 1.07993 * 122.50381 * 179.76495 * 18 17 16 31 31 H 1.07997 * 120.24631 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2952 0.0000 0.0000 3 14 2.2292 1.6176 0.0000 4 1 3.0830 1.6963 -1.2126 5 1 1.2643 2.7464 -0.0006 6 1 3.0830 1.6963 1.2124 7 6 2.0277 -1.2689 -0.0006 8 1 3.0919 -1.2779 -0.1841 9 6 1.3463 -2.4727 0.2374 10 6 1.8119 -3.6793 -0.3330 11 6 1.1451 -4.8468 -0.0973 12 6 0.0109 -4.8609 0.7000 13 6 -0.4661 -3.6821 1.2742 14 7 -1.6126 -3.7079 2.0711 15 6 -1.7089 -2.8694 3.1829 16 16 -0.4165 -1.8472 3.7980 17 6 -1.4547 -1.2571 5.0888 18 6 -2.6533 -1.8332 5.0014 19 6 -2.7994 -2.7234 3.9503 20 7 -4.0625 -3.4599 3.6946 21 8 -5.1022 -3.2772 4.4820 22 8 -4.1431 -4.2968 2.6810 23 6 0.1925 -2.4879 1.0497 24 1 -0.4850 0.8401 0.0004 25 1 2.6953 -3.6777 -0.9543 26 1 1.5038 -5.7666 -0.5353 27 1 -0.5069 -5.7918 0.8787 28 1 -2.3421 -4.3085 1.8520 29 1 -1.1636 -0.5392 5.8414 30 1 -3.4514 -1.6208 5.6973 31 1 -0.1737 -1.5732 1.4919 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307121985.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = 62.184242 kcal Electronic energy + Delta-G solvation = -20027.189769 eV Core-core repulsion = 16789.702569 eV Total energy + Delta-G solvation = -3237.487200 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09281 -39.85436 -38.37746 -36.76883 -35.51588 -35.21604 -31.87926 -31.17867 -29.68315 -27.64062 -26.81113 -24.51602 -23.12971 -22.59450 -21.38783 -19.77971 -19.55141 -19.19658 -18.09009 -17.24791 -17.17662 -16.84588 -16.54778 -16.04133 -15.56113 -15.24184 -14.83911 -14.66044 -14.30658 -13.81190 -13.55564 -13.13423 -12.84458 -12.71259 -12.53730 -12.41685 -12.21793 -12.15169 -12.01496 -11.94541 -11.65215 -11.48598 -11.12378 -10.15199 -9.79857 -9.44446 -8.77933 -8.54359 -6.38322 -1.64110 -0.56317 -0.21338 0.40295 0.74288 0.89110 1.06243 1.29363 1.41608 1.51525 1.54218 1.83364 2.17385 2.59646 3.26670 3.57968 3.73766 4.37360 4.43852 4.53359 4.56295 4.77264 4.83353 4.86446 4.97549 5.01972 5.12189 5.22683 5.59624 5.70297 5.79913 5.91472 6.01736 6.13050 6.24387 6.59214 6.76539 6.95895 8.14568 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.006270 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.658690 B = 4464.582719 C = 5529.286225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.043 3.957 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.249 1.249 7 C -0.494 4.494 8 H 0.087 0.913 9 C 0.103 3.897 10 C -0.246 4.246 11 C -0.063 4.063 12 C -0.273 4.273 13 C 0.127 3.873 14 N -0.592 5.592 15 C 0.172 3.828 16 S 0.245 5.755 17 C -0.227 4.227 18 C -0.086 4.086 19 C -0.132 4.132 20 N 0.039 4.961 21 O -0.216 6.216 22 O -0.288 6.288 23 C -0.224 4.224 24 H 0.298 0.702 25 H 0.106 0.894 26 H 0.129 0.871 27 H 0.113 0.887 28 H 0.426 0.574 29 H 0.227 0.773 30 H 0.182 0.818 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 2.639 7.897 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.173 1.173 7 C -0.521 4.521 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.266 4.266 11 C -0.082 4.082 12 C -0.294 4.294 13 C 0.034 3.966 14 N -0.219 5.219 15 C -0.064 4.064 16 S 0.498 5.502 17 C -0.362 4.362 18 C -0.114 4.114 19 C -0.240 4.240 20 N 0.487 4.513 21 O -0.399 6.399 22 O -0.449 6.449 23 C -0.247 4.247 24 H 0.110 0.890 25 H 0.125 0.875 26 H 0.147 0.853 27 H 0.131 0.869 28 H 0.271 0.729 29 H 0.244 0.756 30 H 0.200 0.800 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.878 3.192 7.412 8.953 hybrid contribution -2.230 -0.411 -0.220 2.279 sum 1.647 2.780 7.192 7.885 Atomic orbital electron populations 1.69132 1.10056 1.31993 1.30244 1.28210 0.95124 1.04538 0.90083 0.85262 0.79054 0.74856 0.80766 1.18353 1.19154 1.17304 1.20939 0.96177 0.90140 1.44874 0.89459 1.17699 0.90870 0.93361 0.88113 1.21169 1.04537 0.93703 1.07200 1.20449 0.93959 0.97693 0.96075 1.20410 1.02791 0.95177 1.11062 1.18011 0.87475 0.95720 0.95372 1.42724 1.19712 1.37436 1.22058 1.23116 0.98343 0.95143 0.89815 1.85885 1.07820 1.36113 1.20335 1.26049 0.96097 1.08501 1.05582 1.19465 1.00496 0.94781 0.96625 1.19440 0.83051 1.12590 1.08951 1.50042 1.03139 0.98664 0.99475 1.96175 1.26771 1.72927 1.44073 1.96082 1.92066 1.35436 1.21288 1.21296 1.02192 0.94947 1.06233 0.88994 0.87541 0.85334 0.86921 0.72863 0.75634 0.80044 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.42 11.07 23.21 0.26 -36.17 16 2 C 0.04 1.89 5.40 87.19 0.47 2.36 16 3 Si 0.98 32.63 29.66 68.60 2.03 34.67 16 4 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 5 H -0.27 -8.47 7.11 99.48 0.71 -7.76 16 6 H -0.25 -7.90 7.11 99.48 0.71 -7.20 16 7 C -0.49 -23.34 9.30 24.95 0.23 -23.11 16 8 H 0.09 3.94 7.96 -2.91 -0.02 3.91 16 9 C 0.10 4.95 5.57 -21.29 -0.12 4.83 16 10 C -0.25 -10.86 9.76 22.63 0.22 -10.64 16 11 C -0.06 -2.52 9.96 21.96 0.22 -2.30 16 12 C -0.27 -11.19 9.98 22.68 0.23 -10.97 16 13 C 0.13 5.52 6.24 38.20 0.24 5.76 16 14 N -0.59 -23.69 5.43 -183.45 -1.00 -24.69 16 15 C 0.17 6.27 6.85 82.52 0.57 6.83 16 16 S 0.24 7.47 19.66 -56.49 -1.11 6.36 16 17 C -0.23 -4.98 11.21 66.70 0.75 -4.24 16 18 C -0.09 -2.26 9.74 21.21 0.21 -2.06 16 19 C -0.13 -4.62 6.88 35.43 0.24 -4.37 16 20 N 0.04 1.54 5.00 -48.23 -0.24 1.30 16 21 O -0.22 -8.47 19.53 3.52 0.07 -8.40 16 22 O -0.29 -12.27 17.08 3.52 0.06 -12.21 16 23 C -0.22 -10.41 6.89 22.97 0.16 -10.25 16 24 H 0.30 12.36 8.27 -92.70 -0.77 11.60 16 25 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 26 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 27 H 0.11 4.14 8.06 -2.91 -0.02 4.11 16 28 H 0.43 16.92 6.06 -92.71 -0.56 16.36 16 29 H 0.23 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.18 3.94 7.93 -2.91 -0.02 3.92 16 31 H 0.13 6.01 4.17 -4.89 -0.02 5.99 16 Total: -1.00 -56.98 293.15 4.12 -52.86 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.63 Total: 34.42 kcal Atomic # 6 Polarization: -51.56 SS G_CDS: 3.41 Total: -48.15 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.98 Total: -59.56 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.13 Total: -20.61 kcal Atomic # 14 Polarization: 32.63 SS G_CDS: 2.03 Total: 34.67 kcal Atomic # 16 Polarization: 7.47 SS G_CDS: -1.11 Total: 6.36 kcal Total: -56.98 4.12 -52.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307121985.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.048 kcal (2) G-P(sol) polarization free energy of solvation -56.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds