Wall clock time and date at job start Tue Mar 31 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86797 * 120.00242 * 2 1 4 4 H 1.48496 * 109.47234 * 269.99634 * 3 2 1 5 5 H 1.48497 * 109.47396 * 29.99811 * 3 2 1 6 6 H 1.48503 * 109.46868 * 149.99637 * 3 2 1 7 7 C 1.38631 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00393 * 180.02562 * 7 2 1 9 9 O 1.34820 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.35769 * 117.00037 * 185.40549 * 9 7 2 11 11 C 1.38915 * 119.99516 * 185.63595 * 10 9 7 12 12 C 1.37999 * 120.00589 * 179.76544 * 11 10 9 13 13 C 1.38953 * 119.99149 * 0.53667 * 12 11 10 14 14 N 1.39882 * 120.00338 * 179.74396 * 13 12 11 15 15 C 1.34773 * 119.99573 * 326.27151 * 14 13 12 16 16 O 1.21638 * 120.00630 * 354.77998 * 15 14 13 17 17 C 1.47210 * 119.99591 * 174.79072 * 15 14 13 18 18 N 1.30575 * 125.54240 * 359.68582 * 17 15 14 19 19 C 1.30719 * 115.89687 * 179.78082 * 18 17 15 20 20 C 1.34230 * 115.78757 * 0.52014 * 19 18 17 21 21 S 1.71072 * 109.09269 * 359.72447 * 20 19 18 22 22 C 1.38955 * 119.99155 * 359.71787 * 13 12 11 23 23 C 1.37992 * 119.99693 * 0.02562 * 22 13 12 24 24 H 0.97002 * 119.99564 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99814 * 0.02562 * 11 10 9 26 26 H 1.07994 * 120.00208 * 180.25661 * 12 11 10 27 27 H 0.97001 * 119.99603 * 146.26961 * 14 13 12 28 28 H 1.08006 * 122.10455 * 180.24559 * 19 18 17 29 29 H 1.07997 * 125.44995 * 179.71773 * 20 19 18 30 30 H 1.08004 * 119.99700 * 179.97438 * 22 13 12 31 31 H 1.07999 * 119.99831 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0463 -1.4000 5 1 1.4473 2.6527 0.7000 6 1 3.5473 1.4400 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0694 -3.5041 0.1150 11 6 1.4528 -4.7441 0.0045 12 6 2.2002 -5.8988 0.1160 13 6 3.5677 -5.8212 0.3500 14 7 4.3245 -6.9916 0.4684 15 6 3.7803 -8.0928 1.0230 16 8 2.6651 -8.0427 1.5063 17 6 4.5355 -9.3562 1.0441 18 7 5.7327 -9.5332 0.5538 19 6 6.2291 -10.7359 0.6796 20 6 5.4375 -11.6338 1.2870 21 16 3.9681 -10.8767 1.7279 22 6 4.1833 -4.5809 0.4658 23 6 3.4365 -3.4264 0.3489 24 1 -0.4849 0.8401 -0.0004 25 1 0.3892 -4.8043 -0.1729 26 1 1.7215 -6.8626 0.0260 27 1 5.2411 -7.0106 0.1513 28 1 7.2124 -10.9922 0.3136 29 1 5.6881 -12.6685 1.4683 30 1 5.2461 -4.5205 0.6480 31 1 3.9149 -2.4624 0.4393 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320961210.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:18 Heat of formation + Delta-G solvation = 21.124468 kcal Electronic energy + Delta-G solvation = -19024.212665 eV Core-core repulsion = 15784.944979 eV Total energy + Delta-G solvation = -3239.267685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51398 -39.54929 -38.58290 -36.52494 -34.05727 -32.22821 -30.98186 -30.25077 -28.13409 -26.37711 -25.29554 -22.75853 -22.19678 -21.15803 -19.85458 -18.85527 -18.00892 -17.29920 -17.13158 -16.27706 -15.55944 -15.46140 -14.59335 -14.50354 -14.19721 -14.03283 -13.78596 -13.56855 -13.37657 -12.82056 -12.53924 -11.88344 -11.83187 -11.62312 -11.59406 -11.08301 -10.72549 -10.52469 -10.41843 -10.03992 -10.01722 -9.72090 -9.29076 -9.25391 -8.73397 -8.23635 -6.95982 -6.46204 -4.03845 -0.07038 0.83482 1.38787 1.92183 2.17302 2.34503 3.09364 3.13200 3.14366 3.18037 3.19890 3.93604 3.96279 4.54996 4.73008 4.78440 4.99242 5.09313 5.28573 5.54373 5.66593 5.74699 6.09062 6.17742 6.23047 6.76270 6.80079 6.90306 7.09370 7.13758 7.20798 7.38098 7.61657 7.72644 7.98132 8.17346 8.99061 9.68859 10.71620 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.051772 B = 0.002845 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.700487 B = 9838.987457 C =10258.901262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.149 3.851 11 C -0.177 4.177 12 C -0.065 4.065 13 C 0.031 3.969 14 N -0.629 5.629 15 C 0.586 3.414 16 O -0.514 6.514 17 C -0.012 4.012 18 N -0.429 5.429 19 C 0.029 3.971 20 C -0.286 4.286 21 S 0.253 5.747 22 C -0.083 4.083 23 C -0.219 4.219 24 H 0.271 0.729 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.412 0.588 28 H 0.178 0.822 29 H 0.184 0.816 30 H 0.113 0.887 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.788 -19.791 1.601 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.095 3.905 11 C -0.197 4.197 12 C -0.085 4.085 13 C -0.062 4.062 14 N -0.274 5.274 15 C 0.369 3.631 16 O -0.389 6.389 17 C -0.287 4.287 18 N -0.147 5.147 19 C -0.128 4.128 20 C -0.427 4.427 21 S 0.508 5.492 22 C -0.104 4.104 23 C -0.238 4.238 24 H 0.080 0.920 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.248 0.752 28 H 0.195 0.805 29 H 0.201 0.799 30 H 0.131 0.869 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.861 -19.410 2.176 21.880 hybrid contribution 2.116 0.370 -0.451 2.195 sum 11.976 -19.040 1.724 22.560 Atomic orbital electron populations 1.70049 1.05977 1.27742 1.45745 1.25302 0.95853 0.98883 0.96512 0.85704 0.78913 0.80047 0.78720 1.19862 1.20257 1.19173 1.21325 0.91800 0.80845 1.52793 0.89016 1.84003 1.34222 1.11447 1.78043 1.19433 0.90322 0.88048 0.92711 1.20107 1.00039 0.89462 1.10090 1.20601 0.92020 0.97999 0.97867 1.17220 0.91707 0.84215 1.13034 1.42889 1.16654 1.09521 1.58314 1.16717 0.85445 0.81739 0.79200 1.90892 1.18556 1.83942 1.45514 1.27772 0.95514 0.99644 1.05790 1.66837 1.08863 1.22344 1.16675 1.21730 1.02444 0.87006 1.01659 1.26932 1.00379 1.06918 1.08487 1.84138 1.13645 1.01281 1.50182 1.20486 0.98880 0.90641 1.00354 1.20984 0.94148 0.98369 1.10348 0.91958 0.85949 0.85728 0.75168 0.80517 0.79875 0.86918 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.32 29.55 -169.99 -5.02 15.29 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.39 -10.81 9.44 30.88 0.29 -10.52 16 8 H 0.09 2.32 5.29 -52.49 -0.28 2.04 16 9 O -0.17 -4.94 9.75 0.02 0.00 -4.94 16 10 C 0.15 3.60 6.65 -39.08 -0.26 3.34 16 11 C -0.18 -3.86 9.98 -39.42 -0.39 -4.26 16 12 C -0.06 -1.28 8.65 -39.40 -0.34 -1.62 16 13 C 0.03 0.56 6.27 -83.65 -0.52 0.03 16 14 N -0.63 -9.49 5.33 -10.86 -0.06 -9.54 16 15 C 0.59 9.01 7.54 -12.62 -0.10 8.92 16 16 O -0.51 -9.33 14.64 5.24 0.08 -9.26 16 17 C -0.01 -0.15 7.45 -14.44 -0.11 -0.26 16 18 N -0.43 -4.83 10.25 -11.51 -0.12 -4.95 16 19 C 0.03 0.24 11.24 -19.44 -0.22 0.02 16 20 C -0.29 -2.00 11.09 29.32 0.33 -1.67 16 21 S 0.25 2.34 23.03 -107.50 -2.48 -0.13 16 22 C -0.08 -1.52 9.96 -39.41 -0.39 -1.91 16 23 C -0.22 -4.67 9.12 -39.42 -0.36 -5.03 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 26 H 0.12 2.35 6.43 -52.49 -0.34 2.01 16 27 H 0.41 5.18 8.48 -40.82 -0.35 4.84 16 28 H 0.18 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 31 H 0.13 2.79 5.71 -52.49 -0.30 2.49 16 LS Contribution 296.90 15.07 4.47 4.47 Total: -1.00 -32.27 296.90 -6.62 -38.89 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -2.09 Total: 6.54 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.17 Total: -11.99 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.58 Total: -38.88 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.48 Total: -0.13 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.27 -6.62 -38.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320961210.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.019 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds