Wall clock time and date at job start Tue Mar 31 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86797 * 120.00242 * 2 1 4 4 H 1.48496 * 109.47234 * 269.99634 * 3 2 1 5 5 H 1.48497 * 109.47396 * 29.99811 * 3 2 1 6 6 H 1.48503 * 109.46868 * 149.99637 * 3 2 1 7 7 C 1.38631 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00393 * 180.02562 * 7 2 1 9 9 O 1.34820 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.35769 * 117.00037 * 185.40549 * 9 7 2 11 11 C 1.38915 * 119.99516 * 185.63595 * 10 9 7 12 12 C 1.37999 * 120.00589 * 179.76544 * 11 10 9 13 13 C 1.38953 * 119.99149 * 0.53667 * 12 11 10 14 14 N 1.39882 * 120.00338 * 179.74396 * 13 12 11 15 15 C 1.34773 * 119.99573 * 326.27151 * 14 13 12 16 16 O 1.21638 * 120.00630 * 354.77998 * 15 14 13 17 17 C 1.47210 * 119.99591 * 174.79072 * 15 14 13 18 18 N 1.30575 * 125.54240 * 359.68582 * 17 15 14 19 19 C 1.30719 * 115.89687 * 179.78082 * 18 17 15 20 20 C 1.34230 * 115.78757 * 0.52014 * 19 18 17 21 21 S 1.71072 * 109.09269 * 359.72447 * 20 19 18 22 22 C 1.38955 * 119.99155 * 359.71787 * 13 12 11 23 23 C 1.37992 * 119.99693 * 0.02562 * 22 13 12 24 24 H 0.97002 * 119.99564 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99814 * 0.02562 * 11 10 9 26 26 H 1.07994 * 120.00208 * 180.25661 * 12 11 10 27 27 H 0.97001 * 119.99603 * 146.26961 * 14 13 12 28 28 H 1.08006 * 122.10455 * 180.24559 * 19 18 17 29 29 H 1.07997 * 125.44995 * 179.71773 * 20 19 18 30 30 H 1.08004 * 119.99700 * 179.97438 * 22 13 12 31 31 H 1.07999 * 119.99831 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0463 -1.4000 5 1 1.4473 2.6527 0.7000 6 1 3.5473 1.4400 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0694 -3.5041 0.1150 11 6 1.4528 -4.7441 0.0045 12 6 2.2002 -5.8988 0.1160 13 6 3.5677 -5.8212 0.3500 14 7 4.3245 -6.9916 0.4684 15 6 3.7803 -8.0928 1.0230 16 8 2.6651 -8.0427 1.5063 17 6 4.5355 -9.3562 1.0441 18 7 5.7327 -9.5332 0.5538 19 6 6.2291 -10.7359 0.6796 20 6 5.4375 -11.6338 1.2870 21 16 3.9681 -10.8767 1.7279 22 6 4.1833 -4.5809 0.4658 23 6 3.4365 -3.4264 0.3489 24 1 -0.4849 0.8401 -0.0004 25 1 0.3892 -4.8043 -0.1729 26 1 1.7215 -6.8626 0.0260 27 1 5.2411 -7.0106 0.1513 28 1 7.2124 -10.9922 0.3136 29 1 5.6881 -12.6685 1.4683 30 1 5.2461 -4.5205 0.6480 31 1 3.9149 -2.4624 0.4393 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320961210.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:17 Heat of formation + Delta-G solvation = -1.853980 kcal Electronic energy + Delta-G solvation = -19025.209085 eV Core-core repulsion = 15784.944979 eV Total energy + Delta-G solvation = -3240.264106 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70890 -40.70052 -40.07237 -38.17944 -35.51943 -34.17291 -31.91355 -31.83222 -29.57520 -27.59146 -26.99793 -24.11040 -23.65158 -22.50016 -21.02495 -19.86931 -19.71645 -18.91172 -18.22816 -17.76262 -16.73339 -16.39446 -16.32715 -15.99400 -15.53977 -15.41596 -15.18159 -14.82747 -14.54787 -14.36316 -14.17660 -13.60065 -13.33780 -13.26801 -12.74878 -12.48622 -12.39835 -12.11121 -11.62810 -11.44500 -11.08943 -10.92071 -10.73230 -10.59253 -9.98933 -9.87982 -8.65338 -8.45390 -6.12561 -0.86927 0.06425 0.49427 0.51504 0.71483 1.31964 1.38083 1.47926 1.55753 2.01501 2.08206 2.19881 2.81460 3.00958 3.16092 3.49088 3.91181 4.05253 4.10241 4.29855 4.39479 4.47330 4.57064 4.68341 5.04086 5.08388 5.14297 5.25584 5.40698 5.49781 5.64784 6.02272 6.06730 6.24446 6.50595 6.94619 6.99275 7.78557 8.77872 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.051772 B = 0.002845 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.700487 B = 9838.987457 C =10258.901262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.412 4.412 8 H 0.107 0.893 9 O -0.228 6.228 10 C 0.112 3.888 11 C -0.186 4.186 12 C -0.069 4.069 13 C 0.057 3.943 14 N -0.627 5.627 15 C 0.591 3.409 16 O -0.549 6.549 17 C -0.061 4.061 18 N -0.432 5.432 19 C 0.011 3.989 20 C -0.251 4.251 21 S 0.270 5.730 22 C -0.075 4.075 23 C -0.218 4.218 24 H 0.273 0.727 25 H 0.117 0.883 26 H 0.133 0.867 27 H 0.427 0.573 28 H 0.209 0.791 29 H 0.224 0.776 30 H 0.157 0.843 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.460 -22.430 1.954 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.173 1.173 7 C -0.488 4.488 8 H 0.124 0.876 9 O -0.134 6.134 10 C 0.061 3.939 11 C -0.205 4.205 12 C -0.089 4.089 13 C -0.037 4.037 14 N -0.272 5.272 15 C 0.376 3.624 16 O -0.426 6.426 17 C -0.333 4.333 18 N -0.152 5.152 19 C -0.146 4.146 20 C -0.391 4.391 21 S 0.523 5.477 22 C -0.095 4.095 23 C -0.238 4.238 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.150 0.850 27 H 0.266 0.734 28 H 0.225 0.775 29 H 0.241 0.759 30 H 0.174 0.826 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.592 -22.108 2.520 26.074 hybrid contribution 1.153 0.623 -0.514 1.407 sum 14.745 -21.486 2.006 26.135 Atomic orbital electron populations 1.70204 1.08140 1.28830 1.48773 1.26627 0.96836 1.02863 0.95831 0.84563 0.77869 0.74400 0.79242 1.18812 1.19885 1.17316 1.21869 0.92690 0.81271 1.53007 0.87594 1.83969 1.35851 1.12561 1.81064 1.19873 0.91742 0.87691 0.94570 1.20237 1.00278 0.89710 1.10318 1.20719 0.92957 0.97409 0.97846 1.17357 0.91337 0.85679 1.09280 1.42827 1.17079 1.08594 1.58737 1.17098 0.85048 0.82500 0.77773 1.90870 1.20187 1.84711 1.46859 1.27126 0.96683 0.99586 1.09922 1.66806 1.08333 1.24072 1.15959 1.22243 1.03874 0.86219 1.02238 1.27466 0.98260 1.08280 1.05133 1.84160 1.14716 0.99730 1.49086 1.20816 1.00743 0.89260 0.98705 1.21125 0.93162 0.99744 1.09756 0.91851 0.86455 0.84963 0.73401 0.77476 0.75909 0.82588 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.80 13.67 21.61 0.30 -56.51 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 42.46 29.55 68.60 2.03 44.49 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 7 C -0.41 -23.77 9.44 67.91 0.64 -23.13 16 8 H 0.11 5.49 5.29 -2.91 -0.02 5.48 16 9 O -0.23 -13.77 9.75 -22.85 -0.22 -14.00 16 10 C 0.11 5.66 6.65 22.59 0.15 5.81 16 11 C -0.19 -8.46 9.98 22.38 0.22 -8.24 16 12 C -0.07 -2.74 8.65 22.38 0.19 -2.55 16 13 C 0.06 1.99 6.27 38.20 0.24 2.23 16 14 N -0.63 -17.65 5.33 -306.50 -1.63 -19.29 16 15 C 0.59 17.39 7.54 86.60 0.65 18.04 16 16 O -0.55 -19.69 14.64 -4.15 -0.06 -19.75 16 17 C -0.06 -1.39 7.45 87.24 0.65 -0.74 16 18 N -0.43 -8.44 10.25 -190.33 -1.95 -10.39 16 19 C 0.01 0.13 11.24 83.94 0.94 1.08 16 20 C -0.25 -2.30 11.09 66.90 0.74 -1.56 16 21 S 0.27 4.24 23.03 -56.49 -1.30 2.94 16 22 C -0.08 -2.59 9.96 22.38 0.22 -2.37 16 23 C -0.22 -9.33 9.12 22.37 0.20 -9.13 16 24 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 25 H 0.12 5.30 8.06 -2.91 -0.02 5.28 16 26 H 0.13 5.02 6.43 -2.91 -0.02 5.00 16 27 H 0.43 9.58 8.48 -92.71 -0.79 8.80 16 28 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16 29 H 0.22 0.22 8.06 -2.91 -0.02 0.20 16 30 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.13 5.63 5.71 -2.91 -0.02 5.62 16 Total: -1.00 -75.57 296.90 2.90 -72.67 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.42 Total: 21.28 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 5.33 Total: -21.44 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -3.29 Total: -86.18 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.28 Total: -33.75 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.30 Total: 2.94 kcal Total: -75.57 2.90 -72.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320961210.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.817 kcal (2) G-P(sol) polarization free energy of solvation -75.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds