Wall clock time and date at job start Tue Mar 31 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 H 1.09001 * 109.46889 * 305.00307 * 3 2 1 5 5 C 1.50699 * 109.46849 * 185.00269 * 3 2 1 6 6 H 1.08005 * 119.99357 * 239.99844 * 5 3 2 7 7 C 1.37878 * 120.00238 * 59.99774 * 5 3 2 8 8 N 1.31510 * 120.00053 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99594 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46713 * 90.00686 * 9 7 5 11 11 H 1.48500 * 109.46723 * 209.99817 * 9 7 5 12 12 H 1.48491 * 109.47576 * 330.00455 * 9 7 5 13 13 O 1.45194 * 109.46962 * 64.99773 * 3 2 1 14 14 C 1.34797 * 117.00534 * 269.99945 * 13 3 2 15 15 O 1.21558 * 119.99431 * 0.02562 * 14 13 3 16 16 C 1.47026 * 120.00508 * 180.02562 * 14 13 3 17 17 C 1.44469 * 123.47413 * 354.54260 * 16 14 13 18 18 C 1.32745 * 113.09047 * 179.97438 * 17 16 14 19 19 S 1.75491 * 110.59777 * 359.97438 * 18 17 16 20 20 C 1.36101 * 123.48061 * 174.52160 * 16 14 13 21 21 C 1.50699 * 124.59275 * 359.75103 * 20 16 14 22 22 F 1.39904 * 109.47201 * 193.68309 * 21 20 16 23 23 F 1.39904 * 109.47416 * 313.68573 * 21 20 16 24 24 H 1.08996 * 109.47197 * 299.99888 * 1 2 3 25 25 H 1.08996 * 109.47078 * 59.99949 * 1 2 3 26 26 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46838 * 239.99746 * 2 1 3 28 28 H 1.08996 * 109.47078 * 120.00050 * 2 1 3 29 29 H 0.97003 * 119.99941 * 179.97438 * 8 7 5 30 30 H 1.08004 * 123.45724 * 359.95610 * 17 16 14 31 31 H 1.08001 * 124.69634 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.47051 * 73.68540 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8812 -1.3818 10 1 6.5548 -0.3503 -0.7602 11 1 6.3829 0.9222 -2.8173 12 1 6.5570 2.0736 -0.6902 13 8 1.6559 2.0917 1.2406 14 6 0.4677 2.7281 1.2560 15 8 -0.2284 2.7397 0.2596 16 6 0.0137 3.4083 2.4779 17 6 0.7236 3.3468 3.7347 18 6 0.1309 4.0366 4.7016 19 16 -1.3345 4.7981 4.1078 20 6 -1.1183 4.1611 2.5417 21 6 -2.0503 4.4045 1.3828 22 9 -2.9230 5.4516 1.6981 23 9 -1.3053 4.7439 0.2483 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0604 -2.9503 30 1 1.6421 2.7958 3.8734 31 1 0.4996 4.1180 5.7135 32 1 -2.6252 3.5003 1.1827 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343503189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:19 Heat of formation + Delta-G solvation = -159.403196 kcal Electronic energy + Delta-G solvation = -21308.416022 eV Core-core repulsion = 17610.630883 eV Total energy + Delta-G solvation = -3697.785139 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.90239 -46.85858 -39.76080 -37.36555 -35.64930 -33.49812 -31.37995 -31.10099 -27.69588 -26.57714 -24.02523 -23.00767 -21.66013 -20.15224 -19.18094 -18.47882 -17.37032 -17.10146 -16.64013 -16.15070 -15.87998 -15.30264 -14.98790 -14.62783 -13.94570 -13.77717 -13.37571 -13.25753 -12.93078 -12.79115 -12.62785 -12.44315 -12.05484 -11.49017 -11.42662 -11.37757 -11.17394 -11.05239 -10.98094 -10.65893 -10.29432 -9.84343 -9.71285 -9.38242 -9.21389 -8.82805 -8.59652 -8.45618 -6.19548 -4.26571 0.44016 1.20242 1.66097 1.95070 3.23943 3.29527 3.33023 3.50522 3.54039 3.70775 4.19465 4.32845 4.77609 4.87069 4.93584 5.12691 5.30132 5.43493 5.87094 5.95171 6.12963 6.20501 6.27594 6.43377 6.84865 6.93164 7.14458 7.20058 7.59606 7.71899 7.90482 8.13459 8.57522 8.85543 9.38507 10.87305 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.023681 B = 0.004776 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.096713 B = 5860.761498 C = 6298.711267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.050 0.950 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.346 6.346 14 C 0.507 3.493 15 O -0.498 6.498 16 C -0.090 4.090 17 C -0.089 4.089 18 C -0.231 4.231 19 S 0.227 5.773 20 C -0.258 4.258 21 C 0.349 3.651 22 F -0.203 7.203 23 F -0.169 7.169 24 H 0.030 0.970 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.266 0.734 30 H 0.165 0.835 31 H 0.176 0.824 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 6.134 12.695 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.262 6.262 14 C 0.349 3.651 15 O -0.388 6.388 16 C -0.108 4.108 17 C -0.117 4.117 18 C -0.366 4.366 19 S 0.494 5.506 20 C -0.378 4.378 21 C 0.294 3.706 22 F -0.184 7.184 23 F -0.150 7.150 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.182 0.818 31 H 0.193 0.807 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.834 6.976 12.853 18.200 hybrid contribution 2.074 -0.958 -0.958 2.477 sum -8.760 6.018 11.895 15.952 Atomic orbital electron populations 1.21862 0.98424 0.99024 1.00702 1.22025 0.92620 0.99293 1.03400 1.20735 0.95079 0.88717 0.78468 0.93274 1.21024 0.89574 1.39022 1.06312 0.91333 1.24872 0.99223 0.94756 0.95018 1.69885 1.35385 1.37787 1.09450 0.86285 0.83898 0.78654 0.77380 1.20357 1.20954 1.19636 1.86548 1.33134 1.62258 1.44263 1.20131 0.81606 0.77166 0.86213 1.90848 1.55454 1.58043 1.34504 1.19692 0.94955 1.01249 0.94870 1.21420 1.01011 0.99546 0.89753 1.25656 1.00686 1.05818 1.04449 1.82973 1.22802 1.47646 0.97203 1.25282 1.02352 1.07394 1.02736 1.19547 0.83014 0.88261 0.79808 1.92992 1.70304 1.62067 1.93086 1.93127 1.77487 1.93311 1.51071 0.95075 0.92706 0.94798 0.87264 0.93968 0.92362 0.81762 0.80711 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.56 37.16 0.32 -2.75 16 2 C -0.14 -3.31 5.49 -26.73 -0.15 -3.46 16 3 C 0.22 5.85 2.25 -27.88 -0.06 5.78 16 4 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 5 C -0.52 -14.45 8.90 -34.44 -0.31 -14.75 16 6 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.88 11.29 55.43 0.63 -24.25 16 9 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 O -0.35 -8.12 9.54 -40.76 -0.39 -8.51 16 14 C 0.51 10.68 6.23 34.29 0.21 10.89 16 15 O -0.50 -11.25 10.55 -19.31 -0.20 -11.46 16 16 C -0.09 -1.50 5.95 -104.65 -0.62 -2.12 16 17 C -0.09 -1.20 10.14 -39.01 -0.40 -1.60 16 18 C -0.23 -2.38 11.12 28.85 0.32 -2.05 16 19 S 0.23 2.39 22.40 -107.50 -2.41 -0.02 16 20 C -0.26 -3.73 6.08 -35.08 -0.21 -3.94 16 21 C 0.35 5.09 4.87 36.01 0.18 5.27 16 22 F -0.20 -2.73 16.80 2.25 0.04 -2.69 16 23 F -0.17 -3.12 14.56 2.25 0.03 -3.09 16 24 H 0.03 0.64 6.06 -51.93 -0.31 0.32 16 25 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.16 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.18 1.21 8.06 -52.49 -0.42 0.78 16 32 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 294.51 15.07 4.44 4.44 Total: -1.00 -30.20 294.51 -6.76 -36.96 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.06 Total: -0.18 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.81 Total: -7.10 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.63 Total: -24.25 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.59 Total: -19.97 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.07 Total: -5.78 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.41 Total: -0.02 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.20 -6.76 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343503189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.439 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds