Wall clock time and date at job start Tue Mar 31 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 H 1.09001 * 109.46889 * 305.00307 * 3 2 1 5 5 C 1.50699 * 109.46849 * 185.00269 * 3 2 1 6 6 H 1.08005 * 119.99357 * 239.99844 * 5 3 2 7 7 C 1.37878 * 120.00238 * 59.99774 * 5 3 2 8 8 N 1.31510 * 120.00053 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99594 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46713 * 90.00686 * 9 7 5 11 11 H 1.48500 * 109.46723 * 209.99817 * 9 7 5 12 12 H 1.48491 * 109.47576 * 330.00455 * 9 7 5 13 13 O 1.45194 * 109.46962 * 64.99773 * 3 2 1 14 14 C 1.34797 * 117.00534 * 269.99945 * 13 3 2 15 15 O 1.21558 * 119.99431 * 0.02562 * 14 13 3 16 16 C 1.47026 * 120.00508 * 180.02562 * 14 13 3 17 17 C 1.44469 * 123.47413 * 354.54260 * 16 14 13 18 18 C 1.32745 * 113.09047 * 179.97438 * 17 16 14 19 19 S 1.75491 * 110.59777 * 359.97438 * 18 17 16 20 20 C 1.36101 * 123.48061 * 174.52160 * 16 14 13 21 21 C 1.50699 * 124.59275 * 359.75103 * 20 16 14 22 22 F 1.39904 * 109.47201 * 193.68309 * 21 20 16 23 23 F 1.39904 * 109.47416 * 313.68573 * 21 20 16 24 24 H 1.08996 * 109.47197 * 299.99888 * 1 2 3 25 25 H 1.08996 * 109.47078 * 59.99949 * 1 2 3 26 26 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46838 * 239.99746 * 2 1 3 28 28 H 1.08996 * 109.47078 * 120.00050 * 2 1 3 29 29 H 0.97003 * 119.99941 * 179.97438 * 8 7 5 30 30 H 1.08004 * 123.45724 * 359.95610 * 17 16 14 31 31 H 1.08001 * 124.69634 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.47051 * 73.68540 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8812 -1.3818 10 1 6.5548 -0.3503 -0.7602 11 1 6.3829 0.9222 -2.8173 12 1 6.5570 2.0736 -0.6902 13 8 1.6559 2.0917 1.2406 14 6 0.4677 2.7281 1.2560 15 8 -0.2284 2.7397 0.2596 16 6 0.0137 3.4083 2.4779 17 6 0.7236 3.3468 3.7347 18 6 0.1309 4.0366 4.7016 19 16 -1.3345 4.7981 4.1078 20 6 -1.1183 4.1611 2.5417 21 6 -2.0503 4.4045 1.3828 22 9 -2.9230 5.4516 1.6981 23 9 -1.3053 4.7439 0.2483 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0604 -2.9503 30 1 1.6421 2.7958 3.8734 31 1 0.4996 4.1180 5.7135 32 1 -2.6252 3.5003 1.1827 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343503189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:19 Heat of formation + Delta-G solvation = -176.097195 kcal Electronic energy + Delta-G solvation = -21309.139928 eV Core-core repulsion = 17610.630883 eV Total energy + Delta-G solvation = -3698.509045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.09521 -48.09685 -41.39464 -38.63891 -37.34239 -35.48359 -33.34952 -32.16207 -29.53978 -27.99984 -25.54264 -24.68489 -22.92164 -21.89812 -20.71399 -19.61935 -18.81902 -18.55205 -18.23483 -17.78515 -17.16904 -16.97919 -16.62303 -16.01826 -15.26384 -15.01063 -14.82556 -14.74716 -14.49739 -14.29462 -13.84249 -13.67221 -13.55254 -13.33112 -13.26466 -13.08864 -12.81752 -12.55757 -12.49324 -12.15785 -12.09397 -11.76239 -11.47349 -11.28376 -10.82651 -10.52481 -10.20326 -9.54541 -8.27574 -6.44256 -0.69002 0.22565 0.71583 0.82797 1.41455 1.43408 1.54454 1.99970 2.08102 2.40966 2.49816 3.02287 3.08535 3.68615 3.74241 3.80538 4.11318 4.31668 4.37587 4.39509 4.55555 4.75620 4.84258 4.95812 5.08390 5.12824 5.21355 5.36979 5.50577 5.66946 5.95627 6.10334 6.59657 6.94948 7.26904 8.79320 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.023681 B = 0.004776 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.096713 B = 5860.761498 C = 6298.711267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.227 3.773 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.267 1.267 13 O -0.354 6.354 14 C 0.500 3.500 15 O -0.523 6.523 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.206 4.206 19 S 0.315 5.685 20 C -0.274 4.274 21 C 0.343 3.657 22 F -0.195 7.195 23 F -0.197 7.197 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.270 0.730 30 H 0.162 0.838 31 H 0.219 0.781 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.735 6.762 15.344 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.174 3.826 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.803 3.197 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.192 1.192 13 O -0.271 6.271 14 C 0.344 3.656 15 O -0.415 6.415 16 C -0.142 4.142 17 C -0.140 4.140 18 C -0.341 4.341 19 S 0.583 5.417 20 C -0.394 4.394 21 C 0.288 3.712 22 F -0.176 7.176 23 F -0.178 7.178 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.180 0.820 31 H 0.235 0.765 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.995 7.615 15.529 20.495 hybrid contribution 1.968 -1.027 -1.680 2.784 sum -9.027 6.588 13.849 17.796 Atomic orbital electron populations 1.21703 0.96247 1.00599 1.00067 1.21857 0.94525 0.97893 1.02353 1.20402 0.94547 0.89299 0.78382 0.97594 1.21316 0.90464 1.39982 1.06965 0.91677 1.25782 1.04183 0.93874 0.94299 1.70011 1.37415 1.37924 1.09837 0.85223 0.77763 0.79113 0.77567 1.19039 1.20354 1.19155 1.86522 1.34969 1.62996 1.42601 1.20937 0.80380 0.76569 0.87741 1.90820 1.55770 1.58938 1.35982 1.19547 0.97006 1.03486 0.94205 1.21357 1.01663 1.01648 0.89346 1.26152 0.99663 1.02904 1.05414 1.82742 1.21288 1.44508 0.93128 1.25485 1.01574 1.07341 1.05049 1.19790 0.83274 0.88904 0.79273 1.92998 1.69891 1.61834 1.92921 1.93067 1.78323 1.93562 1.52860 0.94532 0.94480 0.91952 0.89532 0.93509 0.92029 0.82026 0.76466 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.56 71.98 0.62 -5.04 16 2 C -0.13 -6.49 5.49 30.60 0.17 -6.33 16 3 C 0.23 12.54 2.25 29.85 0.07 12.60 16 4 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 5 C -0.55 -31.51 8.90 25.60 0.23 -31.28 16 6 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -52.68 11.29 21.45 0.24 -52.43 16 9 Si 0.98 43.15 29.54 68.60 2.03 45.18 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 O -0.35 -17.40 9.54 -57.09 -0.54 -17.95 16 14 C 0.50 21.92 6.23 70.13 0.44 22.35 16 15 O -0.52 -24.91 10.55 19.65 0.21 -24.71 16 16 C -0.12 -4.10 5.95 -19.88 -0.12 -4.22 16 17 C -0.11 -2.88 10.14 22.68 0.23 -2.65 16 18 C -0.21 -3.41 11.12 66.64 0.74 -2.67 16 19 S 0.32 5.44 22.40 -56.49 -1.27 4.18 16 20 C -0.27 -7.58 6.08 25.19 0.15 -7.43 16 21 C 0.34 9.87 4.87 71.24 0.35 10.22 16 22 F -0.20 -4.95 16.80 44.97 0.76 -4.20 16 23 F -0.20 -7.53 14.56 44.97 0.65 -6.88 16 24 H 0.04 1.53 6.06 -2.39 -0.01 1.52 16 25 H 0.04 1.73 7.79 -2.39 -0.02 1.71 16 26 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.09 4.78 5.95 -2.38 -0.01 4.77 16 28 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 29 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 31 H 0.22 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.15 3.65 8.14 -2.39 -0.02 3.63 16 Total: -1.00 -68.94 294.51 6.55 -62.39 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.16 Total: 7.38 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 3.32 Total: -12.97 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.24 Total: -52.43 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -0.34 Total: -42.65 kcal Atomic # 9 Polarization: -12.48 SS G_CDS: 1.41 Total: -11.07 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.27 Total: 4.18 kcal Total: -68.94 6.55 -62.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343503189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.707 kcal (2) G-P(sol) polarization free energy of solvation -68.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds