Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47224 * 2 1 4 4 C 1.36872 * 120.00189 * 268.62162 * 3 2 1 5 5 H 1.08004 * 120.00320 * 134.68882 * 4 3 2 6 6 C 1.39016 * 120.00002 * 314.69133 * 4 3 2 7 7 N 1.31394 * 119.99983 * 166.39625 * 6 4 3 8 8 Si 1.86801 * 119.99972 * 346.39954 * 6 4 3 9 9 H 1.48503 * 109.46959 * 90.94357 * 8 6 4 10 10 H 1.48490 * 109.47300 * 210.94666 * 8 6 4 11 11 H 1.48500 * 109.47196 * 330.94784 * 8 6 4 12 12 C 1.34773 * 119.99777 * 88.61792 * 3 2 1 13 13 O 1.21742 * 120.00205 * 353.72912 * 12 3 2 14 14 C 1.46554 * 119.99989 * 173.71822 * 12 3 2 15 15 C 1.37989 * 126.24013 * 173.38650 * 14 12 3 16 16 C 1.39809 * 107.08264 * 180.02562 * 15 14 12 17 17 S 1.76206 * 126.05956 * 180.02562 * 16 15 14 18 18 O 1.42098 * 106.40078 * 203.53999 * 17 16 15 19 19 O 1.42100 * 106.40208 * 336.46344 * 17 16 15 20 20 F 1.61003 * 107.21532 * 90.00158 * 17 16 15 21 21 C 1.35482 * 107.88035 * 0.02562 * 16 15 14 22 22 N 1.35586 * 108.87943 * 359.73041 * 21 16 15 23 23 H 0.97006 * 125.68541 * 180.30089 * 22 21 16 24 24 H 1.09004 * 109.46861 * 175.12426 * 1 2 3 25 25 H 1.09001 * 109.47027 * 295.12269 * 1 2 3 26 26 H 1.08999 * 109.47475 * 55.12437 * 1 2 3 27 27 H 1.09006 * 109.47304 * 120.00212 * 2 1 3 28 28 H 1.09008 * 109.47499 * 240.00068 * 2 1 3 29 29 H 0.97000 * 119.99807 * 179.97438 * 7 6 4 30 30 H 1.08000 * 126.46178 * 0.04092 * 15 14 12 31 31 H 1.08000 * 125.55627 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2733 2.0170 -1.1850 5 1 1.9297 3.0291 -1.3397 6 6 2.9747 1.3599 -2.1894 7 7 2.9918 1.8510 -3.4080 8 14 3.8928 -0.2213 -1.8067 9 1 2.9978 -1.3827 -2.0420 10 1 5.0838 -0.3277 -2.6871 11 1 4.3265 -0.2104 -0.3865 12 6 2.2164 2.0259 1.1669 13 8 1.8829 1.5040 2.2149 14 6 2.8335 3.3551 1.1741 15 6 2.9800 4.1806 2.2701 16 6 3.6168 5.3434 1.8263 17 16 4.0486 6.7331 2.8198 18 8 4.1437 7.8430 1.9376 19 8 3.1814 6.7068 3.9452 20 9 5.5338 6.4724 3.3841 21 6 3.8431 5.2122 0.4970 22 7 3.3769 4.0061 0.0895 23 1 3.4177 3.6601 -0.8159 24 1 -0.3633 -1.0240 -0.0874 25 1 -0.3633 0.4363 0.9305 26 1 -0.3634 0.5876 -0.8431 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.4815 1.3927 -4.1088 30 1 2.6628 3.9683 3.2804 31 1 4.3215 5.9466 -0.1341 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348384798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = -111.601969 kcal Electronic energy + Delta-G solvation = -21265.879284 eV Core-core repulsion = 17590.086924 eV Total energy + Delta-G solvation = -3675.792360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.95808 -41.02095 -38.60091 -37.39714 -36.08310 -35.48036 -32.65379 -31.34502 -30.33613 -28.74844 -25.38250 -23.64675 -21.98404 -21.29867 -19.86146 -19.68570 -18.68033 -17.52209 -16.90428 -16.51490 -15.95910 -15.75130 -15.42413 -14.70485 -14.31771 -14.11421 -14.02034 -13.61670 -13.46797 -13.15437 -12.84440 -12.68919 -12.48284 -12.41907 -12.27288 -12.18295 -12.16853 -11.63615 -11.33553 -11.20091 -11.05277 -10.40660 -10.12319 -9.61768 -9.29807 -9.10311 -8.24040 -7.97725 -6.94888 -4.71348 0.14392 1.95774 2.19038 2.78581 2.95439 3.01138 3.20963 3.64100 3.65606 3.73735 3.98914 4.08746 4.30705 4.56297 5.17661 5.45960 5.51584 5.67836 5.87439 5.95397 6.01551 6.07894 6.24294 6.47784 6.71544 6.81357 6.96372 7.08113 7.54353 7.72057 7.87652 8.46886 8.90959 9.27603 10.10982 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.024521 B = 0.005166 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.583538 B = 5418.391970 C = 5994.058122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.097 3.903 3 N -0.463 5.463 4 C -0.373 4.373 5 H 0.104 0.896 6 C 0.071 3.929 7 N -0.846 5.846 8 Si 0.889 3.111 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.258 1.258 12 C 0.550 3.450 13 O -0.577 6.577 14 C 0.000 4.000 15 C -0.058 4.058 16 C -0.778 4.778 17 S 2.698 3.302 18 O -0.943 6.943 19 O -0.937 6.937 20 F -0.481 7.481 21 C 0.124 3.876 22 N -0.490 5.490 23 H 0.444 0.556 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.284 0.716 30 H 0.159 0.841 31 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 3.656 4.059 6.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.025 4.025 3 N -0.184 5.184 4 C -0.500 4.500 5 H 0.121 0.879 6 C -0.141 4.141 7 N -0.479 5.479 8 Si 0.716 3.284 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.182 1.182 12 C 0.340 3.660 13 O -0.460 6.460 14 C -0.115 4.115 15 C -0.083 4.083 16 C -0.876 4.876 17 S 2.789 3.211 18 O -0.942 6.942 19 O -0.935 6.935 20 F -0.481 7.481 21 C -0.025 4.025 22 N -0.092 5.092 23 H 0.298 0.702 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.176 0.824 31 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.575 3.753 4.544 6.893 hybrid contribution 0.296 -1.496 -1.104 1.882 sum 3.871 2.257 3.440 5.649 Atomic orbital electron populations 1.21994 0.96059 1.00994 1.02487 1.21658 0.94973 0.84689 1.01224 1.43570 1.57548 1.12189 1.05112 1.19063 1.37843 1.02035 0.91026 0.87868 1.25606 0.95164 0.98765 0.94563 1.69686 1.37554 1.40161 1.00478 0.86690 0.79461 0.82394 0.79886 1.19288 1.20996 1.18185 1.17238 0.80883 0.84006 0.83874 1.90726 1.55663 1.67763 1.31817 1.20778 1.07598 0.95987 0.87141 1.20779 0.98748 0.90071 0.98655 1.30116 1.28404 1.21330 1.07708 1.02739 0.70130 0.74099 0.74166 1.93699 1.85508 1.48807 1.66184 1.93707 1.62080 1.86727 1.51028 1.93668 1.66480 1.96020 1.91893 1.21924 0.97805 0.89122 0.93672 1.44199 1.39375 1.12321 1.13316 0.70181 0.92833 0.92443 0.91986 0.91173 0.91526 0.90553 0.82361 0.79779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.23 37.16 0.38 -2.45 16 2 C 0.10 1.97 4.74 -4.04 -0.02 1.95 16 3 N -0.46 -10.24 2.06 -116.33 -0.24 -10.48 16 4 C -0.37 -8.40 6.93 -15.01 -0.10 -8.51 16 5 H 0.10 2.42 6.59 -52.48 -0.35 2.07 16 6 C 0.07 1.60 5.39 -17.45 -0.09 1.51 16 7 N -0.85 -20.00 13.96 55.50 0.77 -19.22 16 8 Si 0.89 18.26 24.98 -169.99 -4.25 14.02 16 9 H -0.27 -5.30 6.63 56.52 0.37 -4.93 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 12 C 0.55 12.38 7.58 -12.91 -0.10 12.28 16 13 O -0.58 -13.89 16.56 5.15 0.09 -13.80 16 14 C 0.00 -0.01 6.73 -81.98 -0.55 -0.56 16 15 C -0.06 -1.03 10.45 -39.09 -0.41 -1.44 16 16 C -0.78 -11.77 6.23 -39.98 -0.25 -12.02 16 17 S 2.70 34.80 7.00 -107.50 -0.75 34.05 16 18 O -0.94 -13.53 17.87 -57.17 -1.02 -14.55 16 19 O -0.94 -14.55 17.89 -57.17 -1.02 -15.57 16 20 F -0.48 -5.82 17.91 2.25 0.04 -5.78 16 21 C 0.12 1.82 11.64 -16.88 -0.20 1.62 16 22 N -0.49 -8.73 5.27 -9.37 -0.05 -8.78 16 23 H 0.44 8.18 5.49 -40.82 -0.22 7.96 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.40 7.56 -51.93 -0.39 1.01 16 28 H 0.07 1.35 3.62 -51.92 -0.19 1.16 16 29 H 0.28 6.30 8.31 -40.82 -0.34 5.96 16 30 H 0.16 2.69 8.06 -52.49 -0.42 2.26 16 31 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 286.38 15.07 4.32 4.32 Total: -1.00 -29.21 286.38 -5.88 -35.10 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -2.43 Total: 8.31 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.34 Total: -7.61 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.49 Total: -38.49 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -1.96 Total: -43.92 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.04 Total: -5.78 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.25 Total: 14.02 kcal Atomic # 16 Polarization: 34.80 SS G_CDS: -0.75 Total: 34.05 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.21 -5.88 -35.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348384798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.504 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds