Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47224 * 2 1 4 4 C 1.36872 * 120.00189 * 268.62162 * 3 2 1 5 5 H 1.08004 * 120.00320 * 134.68882 * 4 3 2 6 6 C 1.39016 * 120.00002 * 314.69133 * 4 3 2 7 7 N 1.31394 * 119.99983 * 166.39625 * 6 4 3 8 8 Si 1.86801 * 119.99972 * 346.39954 * 6 4 3 9 9 H 1.48503 * 109.46959 * 90.94357 * 8 6 4 10 10 H 1.48490 * 109.47300 * 210.94666 * 8 6 4 11 11 H 1.48500 * 109.47196 * 330.94784 * 8 6 4 12 12 C 1.34773 * 119.99777 * 88.61792 * 3 2 1 13 13 O 1.21742 * 120.00205 * 353.72912 * 12 3 2 14 14 C 1.46554 * 119.99989 * 173.71822 * 12 3 2 15 15 C 1.37989 * 126.24013 * 173.38650 * 14 12 3 16 16 C 1.39809 * 107.08264 * 180.02562 * 15 14 12 17 17 S 1.76206 * 126.05956 * 180.02562 * 16 15 14 18 18 O 1.42098 * 106.40078 * 203.53999 * 17 16 15 19 19 O 1.42100 * 106.40208 * 336.46344 * 17 16 15 20 20 F 1.61003 * 107.21532 * 90.00158 * 17 16 15 21 21 C 1.35482 * 107.88035 * 0.02562 * 16 15 14 22 22 N 1.35586 * 108.87943 * 359.73041 * 21 16 15 23 23 H 0.97006 * 125.68541 * 180.30089 * 22 21 16 24 24 H 1.09004 * 109.46861 * 175.12426 * 1 2 3 25 25 H 1.09001 * 109.47027 * 295.12269 * 1 2 3 26 26 H 1.08999 * 109.47475 * 55.12437 * 1 2 3 27 27 H 1.09006 * 109.47304 * 120.00212 * 2 1 3 28 28 H 1.09008 * 109.47499 * 240.00068 * 2 1 3 29 29 H 0.97000 * 119.99807 * 179.97438 * 7 6 4 30 30 H 1.08000 * 126.46178 * 0.04092 * 15 14 12 31 31 H 1.08000 * 125.55627 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2733 2.0170 -1.1850 5 1 1.9297 3.0291 -1.3397 6 6 2.9747 1.3599 -2.1894 7 7 2.9918 1.8510 -3.4080 8 14 3.8928 -0.2213 -1.8067 9 1 2.9978 -1.3827 -2.0420 10 1 5.0838 -0.3277 -2.6871 11 1 4.3265 -0.2104 -0.3865 12 6 2.2164 2.0259 1.1669 13 8 1.8829 1.5040 2.2149 14 6 2.8335 3.3551 1.1741 15 6 2.9800 4.1806 2.2701 16 6 3.6168 5.3434 1.8263 17 16 4.0486 6.7331 2.8198 18 8 4.1437 7.8430 1.9376 19 8 3.1814 6.7068 3.9452 20 9 5.5338 6.4724 3.3841 21 6 3.8431 5.2122 0.4970 22 7 3.3769 4.0061 0.0895 23 1 3.4177 3.6601 -0.8159 24 1 -0.3633 -1.0240 -0.0874 25 1 -0.3633 0.4363 0.9305 26 1 -0.3634 0.5876 -0.8431 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.4815 1.3927 -4.1088 30 1 2.6628 3.9683 3.2804 31 1 4.3215 5.9466 -0.1341 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348384798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = -133.131110 kcal Electronic energy + Delta-G solvation = -21266.812858 eV Core-core repulsion = 17590.086924 eV Total energy + Delta-G solvation = -3676.725934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.01159 -42.42409 -40.24519 -38.56205 -37.25222 -37.20988 -34.38155 -32.77051 -31.82943 -30.16314 -27.11678 -25.17342 -23.25158 -22.78072 -21.18361 -20.96131 -20.29775 -18.63946 -18.41601 -17.72011 -17.46803 -17.15814 -16.92331 -16.30499 -15.82340 -15.34125 -15.15126 -15.08277 -14.97496 -14.69707 -14.36302 -14.11005 -13.85075 -13.79538 -13.67903 -13.45538 -13.36381 -13.20588 -12.84179 -12.70127 -12.54285 -12.07020 -11.75847 -11.31534 -10.82200 -10.62201 -9.92104 -9.45088 -8.70169 -6.48393 -0.97339 0.52286 0.89380 1.15101 1.29007 1.36555 2.03950 2.08117 2.26112 2.30663 2.50449 2.59844 2.87980 3.16543 3.92125 4.04124 4.15441 4.18507 4.32518 4.44626 4.59229 4.74758 4.76994 4.95580 5.18881 5.33708 5.46294 5.66624 5.78139 6.02718 6.47251 6.72358 7.18175 7.56031 8.38432 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.024521 B = 0.005166 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.583538 B = 5418.391970 C = 5994.058122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.087 3.913 3 N -0.470 5.470 4 C -0.369 4.369 5 H 0.091 0.909 6 C 0.049 3.951 7 N -0.873 5.873 8 Si 0.927 3.073 9 H -0.254 1.254 10 H -0.279 1.279 11 H -0.272 1.272 12 C 0.541 3.459 13 O -0.604 6.604 14 C -0.043 4.043 15 C -0.055 4.055 16 C -0.783 4.783 17 S 2.745 3.255 18 O -0.948 6.948 19 O -0.959 6.959 20 F -0.471 7.471 21 C 0.144 3.856 22 N -0.500 5.500 23 H 0.442 0.558 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.289 0.711 30 H 0.161 0.839 31 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.339 4.286 4.002 7.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 N -0.191 5.191 4 C -0.496 4.496 5 H 0.108 0.892 6 C -0.161 4.161 7 N -0.507 5.507 8 Si 0.753 3.247 9 H -0.179 1.179 10 H -0.205 1.205 11 H -0.197 1.197 12 C 0.332 3.668 13 O -0.489 6.489 14 C -0.157 4.157 15 C -0.081 4.081 16 C -0.878 4.878 17 S 2.834 3.166 18 O -0.947 6.947 19 O -0.957 6.957 20 F -0.470 7.470 21 C -0.005 4.005 22 N -0.101 5.101 23 H 0.294 0.706 24 H 0.104 0.896 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.179 0.821 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.349 4.361 4.467 7.609 hybrid contribution 0.089 -1.574 -1.027 1.882 sum 4.438 2.787 3.441 6.269 Atomic orbital electron populations 1.21916 0.94351 1.02840 1.01493 1.21824 0.96516 0.83951 1.01200 1.43700 1.57678 1.12789 1.04903 1.18953 1.37756 1.01785 0.91094 0.89207 1.25933 0.95412 1.00442 0.94299 1.69719 1.38562 1.41318 1.01067 0.86095 0.79024 0.80816 0.78760 1.17945 1.20476 1.19683 1.17627 0.80579 0.84989 0.83572 1.90682 1.56937 1.68810 1.32484 1.20622 1.10296 0.96052 0.88711 1.20982 0.98051 0.90663 0.98374 1.30413 1.27981 1.21073 1.08295 1.01469 0.69476 0.72692 0.72970 1.93686 1.85736 1.48785 1.66502 1.93679 1.63327 1.86783 1.51944 1.93657 1.65720 1.95930 1.91704 1.22739 0.95412 0.88249 0.94065 1.44045 1.40090 1.13330 1.12624 0.70635 0.89558 0.93394 0.92913 0.91263 0.91341 0.90107 0.82101 0.75381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 10.23 71.98 0.74 -4.48 16 2 C 0.09 3.51 4.74 86.38 0.41 3.92 16 3 N -0.47 -20.97 2.06 -640.17 -1.32 -22.29 16 4 C -0.37 -16.73 6.93 84.09 0.58 -16.15 16 5 H 0.09 4.28 6.59 -2.91 -0.02 4.26 16 6 C 0.05 2.19 5.39 84.94 0.46 2.64 16 7 N -0.87 -40.92 13.96 21.68 0.30 -40.62 16 8 Si 0.93 36.89 24.98 68.60 1.71 38.60 16 9 H -0.25 -9.53 6.63 99.48 0.66 -8.87 16 10 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 12 C 0.54 24.76 7.58 86.41 0.65 25.42 16 13 O -0.60 -29.68 16.56 -4.48 -0.07 -29.75 16 14 C -0.04 -1.75 6.73 40.34 0.27 -1.48 16 15 C -0.06 -1.94 10.45 22.59 0.24 -1.70 16 16 C -0.78 -22.10 6.23 22.01 0.14 -21.97 16 17 S 2.75 63.82 7.00 -56.49 -0.40 63.43 16 18 O -0.95 -24.18 17.87 -128.00 -2.29 -26.47 16 19 O -0.96 -27.92 17.89 -128.00 -2.29 -30.21 16 20 F -0.47 -10.03 17.91 44.97 0.81 -9.23 16 21 C 0.14 3.89 11.64 83.48 0.97 4.86 16 22 N -0.50 -17.45 5.27 -183.57 -0.97 -18.42 16 23 H 0.44 16.16 5.49 -92.70 -0.51 15.66 16 24 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 2.77 7.56 -2.38 -0.02 2.75 16 28 H 0.07 2.71 3.62 -2.38 -0.01 2.70 16 29 H 0.29 12.63 8.31 -92.71 -0.77 11.86 16 30 H 0.16 5.44 8.06 -2.91 -0.02 5.42 16 31 H 0.23 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -61.50 286.38 0.59 -60.91 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.64 Total: 22.98 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 4.46 Total: -8.94 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -1.99 Total: -81.33 kcal Atomic # 8 Polarization: -81.77 SS G_CDS: -4.65 Total: -86.42 kcal Atomic # 9 Polarization: -10.03 SS G_CDS: 0.81 Total: -9.23 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 1.71 Total: 38.60 kcal Atomic # 16 Polarization: 63.82 SS G_CDS: -0.40 Total: 63.43 kcal Total: -61.50 0.59 -60.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348384798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.218 kcal (2) G-P(sol) polarization free energy of solvation -61.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds