Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21692 * 119.99974 * 0.02562 * 13 12 2 15 15 C 1.46676 * 119.99980 * 180.02562 * 13 12 2 16 16 C 1.37874 * 126.23055 * 179.71661 * 15 13 12 17 17 C 1.39840 * 107.08098 * 179.84939 * 16 15 13 18 18 S 1.76204 * 126.06652 * 180.15789 * 17 16 15 19 19 O 1.42100 * 106.40148 * 270.28375 * 18 17 16 20 20 O 1.42096 * 106.40066 * 43.19686 * 18 17 16 21 21 F 1.60997 * 107.21958 * 156.74041 * 18 17 16 22 22 C 1.35452 * 107.86531 * 0.41769 * 17 16 15 23 23 N 1.35529 * 108.87071 * 359.74217 * 22 17 16 24 24 H 0.97003 * 125.67531 * 180.02562 * 23 22 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 30 30 H 1.08005 * 126.45813 * 359.97438 * 16 15 13 31 31 H 1.07997 * 125.56082 * 179.76304 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8580 1.1627 -2.4117 15 6 2.6355 -0.7097 -3.5550 16 6 2.8104 -0.1518 -4.8036 17 6 3.2934 -1.1623 -5.6409 18 16 3.6933 -0.9918 -7.3485 19 8 2.5039 -1.2816 -8.0700 20 8 4.3992 0.2350 -7.4747 21 9 4.7412 -2.1589 -7.7115 22 6 3.3937 -2.2969 -4.9079 23 7 2.9969 -2.0352 -3.6387 24 1 2.9722 -2.6754 -2.9103 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 2.2491 -1.6316 -1.1527 30 1 2.6137 0.8731 -5.0819 31 1 3.7347 -3.2536 -5.2748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351021626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -125.821637 kcal Electronic energy + Delta-G solvation = -20347.860337 eV Core-core repulsion = 16671.451366 eV Total energy + Delta-G solvation = -3676.408971 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.39848 -41.61521 -38.64510 -37.69093 -36.41562 -35.03752 -32.72555 -31.69206 -30.15622 -28.61860 -25.40224 -23.41940 -22.60524 -20.90392 -20.21660 -20.04837 -19.13472 -17.77781 -16.91960 -16.80342 -16.53242 -15.65269 -15.34270 -15.15070 -14.70799 -14.46389 -14.33333 -13.80190 -13.73388 -13.23421 -13.04798 -12.97657 -12.61844 -12.55854 -12.49297 -11.88569 -11.68902 -11.21999 -11.10121 -10.91556 -10.45883 -10.37052 -9.91845 -9.54451 -9.21699 -8.75735 -8.67821 -8.15020 -6.25176 -4.35977 -0.27618 1.26941 1.79299 2.58912 2.91369 3.02970 3.15502 3.22115 3.23515 3.66203 3.77095 4.19809 4.24679 4.39160 4.72247 5.01167 5.07619 5.42230 5.53617 6.07232 6.35990 6.67537 6.79618 6.89891 6.98712 7.20115 7.37123 7.52570 7.74715 7.99514 8.37854 8.58163 8.80706 9.31639 10.80777 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.040284 B = 0.003241 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.903827 B = 8636.957854 C = 8972.355137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.880 5.880 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.571 3.429 14 O -0.531 6.531 15 C -0.027 4.027 16 C -0.029 4.029 17 C -0.763 4.763 18 S 2.701 3.299 19 O -0.930 6.930 20 O -0.928 6.928 21 F -0.478 7.478 22 C 0.122 3.878 23 N -0.516 5.516 24 H 0.427 0.573 25 H 0.093 0.907 26 H 0.027 0.973 27 H 0.017 0.983 28 H 0.266 0.734 29 H 0.382 0.618 30 H 0.166 0.834 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 -9.715 -15.307 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.517 5.517 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.351 5.351 13 C 0.355 3.645 14 O -0.408 6.408 15 C -0.140 4.140 16 C -0.054 4.054 17 C -0.858 4.858 18 S 2.789 3.211 19 O -0.929 6.929 20 O -0.927 6.927 21 F -0.477 7.477 22 C -0.022 4.022 23 N -0.110 5.110 24 H 0.267 0.733 25 H 0.111 0.889 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.214 0.786 30 H 0.183 0.817 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.588 -8.690 -15.626 18.732 hybrid contribution 0.288 -1.484 1.996 2.503 sum 5.876 -10.173 -13.630 17.994 Atomic orbital electron populations 1.22094 0.98100 0.99242 1.01237 1.18854 0.91254 0.94137 0.79421 0.92892 1.21144 1.32956 1.13438 0.90255 0.92169 1.24885 0.94651 0.94929 0.99111 1.69889 1.35413 1.22252 1.24145 0.86415 0.78698 0.79690 0.82076 1.20460 1.20938 1.19913 1.46514 1.64879 1.13087 1.10629 1.16995 0.79101 0.86636 0.81788 1.90843 1.51182 1.14596 1.84197 1.21273 1.11432 0.83595 0.97725 1.20739 0.96896 0.98421 0.89342 1.30427 1.29022 1.02052 1.24288 1.02970 0.72578 0.71566 0.74012 1.93758 1.44970 1.83835 1.70292 1.93747 1.73099 1.39921 1.85890 1.93646 1.81536 1.78712 1.93829 1.21757 0.98201 0.98324 0.83943 1.42399 1.47393 1.10431 1.10767 0.73348 0.88867 0.95432 0.96414 0.92358 0.78596 0.81662 0.79430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.19 16 2 C 0.26 6.40 2.56 -69.08 -0.18 6.22 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 4 C -0.54 -13.57 8.73 -34.44 -0.30 -13.87 16 5 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -23.95 11.32 55.43 0.63 -23.32 16 8 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 12 N -0.70 -13.53 5.07 -56.24 -0.28 -13.82 16 13 C 0.57 10.94 7.75 -12.85 -0.10 10.84 16 14 O -0.53 -12.35 16.54 5.20 0.09 -12.26 16 15 C -0.03 -0.40 7.06 -81.98 -0.58 -0.97 16 16 C -0.03 -0.40 10.61 -39.12 -0.42 -0.81 16 17 C -0.76 -7.91 6.09 -39.98 -0.24 -8.15 16 18 S 2.70 24.79 6.95 -107.50 -0.75 24.04 16 19 O -0.93 -11.01 18.04 -57.18 -1.03 -12.04 16 20 O -0.93 -11.47 18.04 -57.18 -1.03 -12.50 16 21 F -0.48 -3.54 17.89 2.25 0.04 -3.50 16 22 C 0.12 0.98 11.81 -16.91 -0.20 0.78 16 23 N -0.52 -5.06 5.99 -9.39 -0.06 -5.11 16 24 H 0.43 2.91 8.19 -40.82 -0.33 2.58 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.38 5.96 7.67 -40.82 -0.31 5.64 16 30 H 0.17 2.22 8.06 -52.48 -0.42 1.79 16 31 H 0.19 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 297.81 15.07 4.49 4.49 Total: -1.00 -35.39 297.81 -7.28 -42.67 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -2.59 Total: 4.08 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.76 Total: -7.50 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.29 Total: -42.25 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.98 Total: -36.80 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 24.79 SS G_CDS: -0.75 Total: 24.04 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.39 -7.28 -42.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351021626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.148 kcal (2) G-P(sol) polarization free energy of solvation -35.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds