Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21692 * 119.99974 * 0.02562 * 13 12 2 15 15 C 1.46676 * 119.99980 * 180.02562 * 13 12 2 16 16 C 1.37874 * 126.23055 * 179.71661 * 15 13 12 17 17 C 1.39840 * 107.08098 * 179.84939 * 16 15 13 18 18 S 1.76204 * 126.06652 * 180.15789 * 17 16 15 19 19 O 1.42100 * 106.40148 * 270.28375 * 18 17 16 20 20 O 1.42096 * 106.40066 * 43.19686 * 18 17 16 21 21 F 1.60997 * 107.21958 * 156.74041 * 18 17 16 22 22 C 1.35452 * 107.86531 * 0.41769 * 17 16 15 23 23 N 1.35529 * 108.87071 * 359.74217 * 22 17 16 24 24 H 0.97003 * 125.67531 * 180.02562 * 23 22 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 30 30 H 1.08005 * 126.45813 * 359.97438 * 16 15 13 31 31 H 1.07997 * 125.56082 * 179.76304 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8580 1.1627 -2.4117 15 6 2.6355 -0.7097 -3.5550 16 6 2.8104 -0.1518 -4.8036 17 6 3.2934 -1.1623 -5.6409 18 16 3.6933 -0.9918 -7.3485 19 8 2.5039 -1.2816 -8.0700 20 8 4.3992 0.2350 -7.4747 21 9 4.7412 -2.1589 -7.7115 22 6 3.3937 -2.2969 -4.9079 23 7 2.9969 -2.0352 -3.6387 24 1 2.9722 -2.6754 -2.9103 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 2.2491 -1.6316 -1.1527 30 1 2.6137 0.8731 -5.0819 31 1 3.7347 -3.2536 -5.2748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351021626.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -155.595756 kcal Electronic energy + Delta-G solvation = -20349.151440 eV Core-core repulsion = 16671.451366 eV Total energy + Delta-G solvation = -3677.700074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.09210 -42.56552 -40.19321 -38.57034 -37.29642 -36.84281 -34.49443 -32.69897 -31.55692 -30.05519 -27.39088 -24.80994 -23.42031 -22.36092 -21.41705 -20.98810 -20.49957 -18.59718 -18.29718 -17.67772 -17.55247 -17.17326 -16.90573 -16.34589 -15.99194 -15.42362 -15.30598 -15.01399 -14.86079 -14.73359 -14.43147 -13.90626 -13.82309 -13.75637 -13.51707 -13.39352 -13.04223 -12.93986 -12.81425 -12.59833 -12.31393 -12.16809 -11.20868 -11.14262 -10.77707 -10.64723 -10.04635 -9.60291 -8.21250 -6.39753 -1.07356 0.30103 0.84754 1.44394 1.44785 1.55193 1.80011 2.10927 2.21577 2.26578 2.31946 2.49998 3.10047 3.42108 3.78553 3.88005 3.94109 4.38075 4.58643 4.69680 4.86592 5.02536 5.11708 5.32978 5.36490 5.49916 5.61927 5.82491 6.03068 6.20859 6.65374 6.77888 7.21567 7.37236 8.85251 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.040284 B = 0.003241 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.903827 B = 8636.957854 C = 8972.355137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.002 0.998 4 C -0.549 4.549 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.257 1.257 12 N -0.697 5.697 13 C 0.570 3.430 14 O -0.586 6.586 15 C -0.062 4.062 16 C -0.036 4.036 17 C -0.781 4.781 18 S 2.747 3.253 19 O -0.954 6.954 20 O -0.961 6.961 21 F -0.460 7.460 22 C 0.167 3.833 23 N -0.505 5.505 24 H 0.443 0.557 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.012 0.988 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.154 0.846 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.217 -13.310 -16.084 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.020 0.980 4 C -0.587 4.587 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.181 1.181 12 N -0.346 5.346 13 C 0.357 3.643 14 O -0.467 6.467 15 C -0.174 4.174 16 C -0.062 4.062 17 C -0.875 4.875 18 S 2.835 3.165 19 O -0.952 6.952 20 O -0.960 6.960 21 F -0.459 7.459 22 C 0.021 3.979 23 N -0.101 5.101 24 H 0.285 0.715 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.238 0.762 30 H 0.172 0.828 31 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.024 -12.341 -16.404 21.696 hybrid contribution -0.103 -0.406 2.105 2.146 sum 6.922 -12.747 -14.299 20.368 Atomic orbital electron populations 1.21918 0.98065 0.99682 0.99750 1.18434 0.91286 0.92130 0.81463 0.98034 1.21501 1.32885 1.13782 0.90513 0.90462 1.25814 0.94756 0.95552 1.02414 1.70049 1.36770 1.23886 1.24762 0.85310 0.77671 0.79243 0.77885 1.20487 1.21130 1.18071 1.46130 1.64991 1.13911 1.09522 1.17511 0.77866 0.86152 0.82724 1.90802 1.53489 1.17137 1.85250 1.20396 1.15132 0.86019 0.95851 1.20873 0.96437 0.98964 0.89948 1.30468 1.30144 1.02154 1.24711 1.01483 0.71518 0.70613 0.72883 1.93724 1.46408 1.84191 1.70908 1.93703 1.73834 1.42209 1.86246 1.93639 1.80838 1.77830 1.93616 1.22844 0.93290 0.99579 0.82166 1.42319 1.46867 1.08715 1.12176 0.71470 0.91296 0.93808 0.96920 0.92458 0.76217 0.82847 0.73100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.66 9.26 71.98 0.67 -5.99 16 2 C 0.27 13.48 2.56 44.24 0.11 13.59 16 3 H 0.00 0.10 7.58 -2.39 -0.02 0.09 16 4 C -0.55 -27.56 8.73 25.60 0.22 -27.34 16 5 H 0.08 3.52 7.74 -2.91 -0.02 3.50 16 6 C 0.02 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -51.25 11.32 21.45 0.24 -51.01 16 8 Si 0.97 40.15 29.54 68.60 2.03 42.17 16 9 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.29 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 12 N -0.70 -27.02 5.07 -450.08 -2.28 -29.30 16 13 C 0.57 22.48 7.75 86.45 0.67 23.15 16 14 O -0.59 -28.98 16.54 -4.32 -0.07 -29.05 16 15 C -0.06 -1.76 7.06 40.35 0.28 -1.47 16 16 C -0.04 -0.98 10.61 22.57 0.24 -0.74 16 17 C -0.78 -14.05 6.09 22.01 0.13 -13.92 16 18 S 2.75 44.04 6.95 -56.49 -0.39 43.65 16 19 O -0.95 -20.59 18.04 -128.00 -2.31 -22.90 16 20 O -0.96 -22.70 18.04 -128.00 -2.31 -25.01 16 21 F -0.46 -5.01 17.89 44.97 0.80 -4.21 16 22 C 0.17 1.84 11.81 83.48 0.99 2.83 16 23 N -0.51 -8.19 5.99 -183.63 -1.10 -9.29 16 24 H 0.44 4.28 8.19 -92.71 -0.76 3.52 16 25 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 29 H 0.40 12.02 7.67 -92.71 -0.71 11.31 16 30 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 31 H 0.25 -0.55 8.06 -2.91 -0.02 -0.57 16 Total: -1.00 -80.87 297.81 -1.88 -82.75 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -0.26 Total: 10.84 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 3.77 Total: -8.66 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -3.14 Total: -89.59 kcal Atomic # 8 Polarization: -72.26 SS G_CDS: -4.69 Total: -76.95 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.80 Total: -4.21 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 44.04 SS G_CDS: -0.39 Total: 43.65 kcal Total: -80.87 -1.88 -82.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351021626.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.847 kcal (2) G-P(sol) polarization free energy of solvation -80.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds