Wall clock time and date at job start Tue Mar 31 2020 06:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86792 * 120.00570 * 2 1 4 4 H 1.48502 * 109.46835 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47154 * 29.99811 * 3 2 1 6 6 H 1.48497 * 109.47359 * 150.00512 * 3 2 1 7 7 C 1.38808 * 119.99143 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99807 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00684 * 359.97438 * 7 2 1 10 10 C 1.76191 * 100.00305 * 185.66039 * 9 7 2 11 11 C 1.39113 * 120.19193 * 6.85265 * 10 9 7 12 12 C 1.37912 * 120.05009 * 180.30118 * 11 10 9 13 13 C 1.38652 * 120.43925 * 359.68297 * 12 11 10 14 14 C 1.37806 * 120.38435 * 359.97438 * 13 12 11 15 15 C 1.39684 * 119.93761 * 0.03066 * 14 13 12 16 16 C 1.47427 * 120.21824 * 180.02562 * 15 14 13 17 17 O 1.21603 * 119.99972 * 179.97438 * 16 15 14 18 18 N 1.34780 * 119.99564 * 359.97438 * 16 15 14 19 19 N 1.40096 * 119.99462 * 180.02562 * 18 16 15 20 20 C 1.35311 * 125.87012 * 359.97438 * 19 18 16 21 21 C 1.35357 * 106.17676 * 180.02562 * 20 19 18 22 22 N 1.33774 * 106.49548 * 0.02562 * 21 20 19 23 23 N 1.28640 * 108.88474 * 359.97438 * 22 21 20 24 24 H 0.97009 * 119.99285 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.97466 * 359.97438 * 11 10 9 26 26 H 1.08007 * 119.78069 * 179.70065 * 12 11 10 27 27 H 1.08005 * 119.81056 * 180.02562 * 13 12 11 28 28 H 1.07998 * 120.03355 * 180.02562 * 14 13 12 29 29 H 0.96994 * 120.00094 * 359.97438 * 18 16 15 30 30 H 1.07996 * 126.91386 * 0.02562 * 20 19 18 31 31 H 1.07994 * 126.75381 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4971 2.0462 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4399 0.6999 7 6 2.0094 -1.2022 -0.0005 8 1 3.0895 -1.2023 -0.0001 9 16 1.1284 -2.7281 -0.0005 10 6 2.4707 -3.8565 0.1698 11 6 3.7581 -3.3826 0.4006 12 6 4.8077 -4.2682 0.5273 13 6 4.5895 -5.6342 0.4328 14 6 3.3204 -6.1237 0.2115 15 6 2.2458 -5.2410 0.0806 16 6 0.8855 -5.7579 -0.1557 17 8 -0.0472 -4.9859 -0.2685 18 7 0.6758 -7.0862 -0.2465 19 7 -0.6168 -7.5774 -0.4716 20 6 -1.7354 -6.8296 -0.6148 21 6 -2.7503 -7.7031 -0.8124 22 7 -2.2101 -8.9265 -0.7802 23 7 -0.9446 -8.8177 -0.5768 24 1 -0.4849 0.8402 0.0004 25 1 3.9366 -2.3201 0.4754 26 1 5.8062 -3.8953 0.7016 27 1 5.4188 -6.3187 0.5340 28 1 3.1569 -7.1888 0.1393 29 1 1.4198 -7.7019 -0.1569 30 1 -1.8045 -5.7524 -0.5787 31 1 -3.7914 -7.4603 -0.9650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449961340.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:22 Heat of formation + Delta-G solvation = 144.723867 kcal Electronic energy + Delta-G solvation = -19642.974408 eV Core-core repulsion = 16441.359146 eV Total energy + Delta-G solvation = -3201.615262 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.058 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.22337 -39.96237 -37.86836 -35.50758 -32.97415 -32.03389 -31.01396 -30.57505 -30.04239 -26.05164 -24.46211 -22.97039 -22.62826 -21.98083 -20.55387 -18.83206 -18.24047 -17.36681 -16.64085 -16.13724 -15.60081 -15.17595 -14.76734 -14.68626 -14.35896 -14.27790 -14.08681 -13.31167 -13.12322 -12.41432 -11.87318 -11.81297 -11.53909 -11.50239 -11.33878 -11.15746 -11.01324 -10.52241 -10.23991 -9.99675 -9.74328 -9.38241 -9.18357 -8.98398 -8.65833 -8.44032 -6.82525 -6.67729 -4.40448 1.01155 1.07050 1.71654 1.76636 2.58321 2.91804 2.96002 3.01321 3.08300 3.18780 3.82287 3.91966 4.14390 4.64173 4.75153 4.80314 4.87534 5.06789 5.22536 5.37300 5.41200 5.56542 5.67850 5.83515 6.07517 6.17137 6.30099 6.52348 6.70348 6.82580 6.88284 7.06451 7.22242 7.34006 7.95041 8.04845 8.48404 8.79036 10.35603 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.005006 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.999515 B = 5591.529832 C = 7096.174940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.085 3.915 3 Si 0.923 3.077 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.597 4.597 8 H 0.095 0.905 9 S 0.200 5.800 10 C -0.054 4.054 11 C -0.148 4.148 12 C -0.068 4.068 13 C -0.181 4.181 14 C -0.057 4.057 15 C -0.175 4.175 16 C 0.560 3.440 17 O -0.486 6.486 18 N -0.509 5.509 19 N -0.086 5.086 20 C -0.022 4.022 21 C -0.058 4.058 22 N -0.261 5.261 23 N -0.109 5.109 24 H 0.278 0.722 25 H 0.144 0.856 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.435 0.565 30 H 0.218 0.782 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 -8.883 0.319 9.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.127 4.127 3 Si 0.748 3.252 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.744 4.744 8 H 0.112 0.888 9 S 0.466 5.534 10 C -0.175 4.175 11 C -0.173 4.173 12 C -0.091 4.091 13 C -0.205 4.205 14 C -0.077 4.077 15 C -0.193 4.193 16 C 0.351 3.649 17 O -0.359 6.359 18 N -0.265 5.265 19 N 0.038 4.962 20 C -0.174 4.174 21 C -0.217 4.217 22 N -0.128 5.128 23 N -0.090 5.090 24 H 0.088 0.912 25 H 0.161 0.839 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.280 0.720 30 H 0.234 0.766 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.378 -9.473 0.133 9.768 hybrid contribution 2.048 1.932 0.183 2.821 sum 4.426 -7.541 0.317 8.750 Atomic orbital electron populations 1.69954 1.06317 1.28898 1.43343 1.25137 0.95040 0.99884 0.92650 0.86081 0.79702 0.80533 0.78921 1.19686 1.20305 1.19078 1.24046 0.97110 0.93615 1.59601 0.88780 1.84586 1.02291 0.93428 1.73076 1.23030 1.01206 0.96362 0.96863 1.21464 0.91370 1.01146 1.03281 1.21176 0.98392 0.93305 0.96195 1.20669 0.96247 0.95428 1.08188 1.20910 0.92691 0.97312 0.96821 1.18380 0.89489 0.92795 1.18604 1.18871 0.90538 0.78539 0.76928 1.90740 1.42499 1.54271 1.48397 1.45704 0.95357 1.08054 1.77427 1.46044 1.00300 1.05363 1.44480 1.24538 0.83394 1.02278 1.07223 1.23593 1.01249 0.88383 1.08494 1.75112 0.98265 1.22168 1.17234 1.78451 1.10311 0.97571 1.22654 0.91183 0.83915 0.86513 0.86491 0.86945 0.71970 0.76581 0.78585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.86 13.22 55.49 0.73 -22.13 16 2 C 0.08 2.16 5.49 -17.46 -0.10 2.06 16 3 Si 0.92 19.24 29.55 -169.99 -5.02 14.22 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.60 -15.06 9.00 30.94 0.28 -14.78 16 8 H 0.09 2.23 4.98 -52.48 -0.26 1.97 16 9 S 0.20 4.79 18.56 -107.50 -2.00 2.79 16 10 C -0.05 -1.08 6.14 -38.39 -0.24 -1.32 16 11 C -0.15 -2.71 9.22 -39.38 -0.36 -3.07 16 12 C -0.07 -0.99 10.02 -39.55 -0.40 -1.39 16 13 C -0.18 -2.36 10.02 -39.59 -0.40 -2.75 16 14 C -0.06 -0.77 9.53 -39.20 -0.37 -1.14 16 15 C -0.17 -2.98 5.89 -104.75 -0.62 -3.60 16 16 C 0.56 9.58 7.82 -12.52 -0.10 9.48 16 17 O -0.49 -9.68 10.89 5.27 0.06 -9.62 16 18 N -0.51 -7.28 6.58 30.43 0.20 -7.08 16 19 N -0.09 -1.36 4.54 30.52 0.14 -1.22 16 20 C -0.02 -0.34 10.50 -17.04 -0.18 -0.52 16 21 C -0.06 -0.80 12.05 -17.73 -0.21 -1.01 16 22 N -0.26 -4.16 12.41 30.24 0.38 -3.79 16 23 N -0.11 -1.77 13.34 60.35 0.81 -0.96 16 24 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.14 2.74 5.03 -52.49 -0.26 2.48 16 26 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 27 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 28 H 0.11 1.07 6.40 -52.49 -0.34 0.73 16 29 H 0.44 4.77 6.86 -182.61 -1.25 3.52 16 30 H 0.22 3.40 5.85 -52.49 -0.31 3.09 16 31 H 0.20 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 287.72 15.07 4.34 4.34 Total: -1.00 -29.59 287.72 -5.89 -35.48 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -2.82 Total: 6.03 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -2.69 Total: -18.04 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 2.25 Total: -35.19 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.06 Total: -9.62 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -2.00 Total: 2.79 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.59 -5.89 -35.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449961340.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.202 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds