Wall clock time and date at job start Tue Mar 31 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86792 * 120.00570 * 2 1 4 4 H 1.48502 * 109.46835 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47154 * 29.99811 * 3 2 1 6 6 H 1.48497 * 109.47359 * 150.00512 * 3 2 1 7 7 C 1.38808 * 119.99143 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99807 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00684 * 359.97438 * 7 2 1 10 10 C 1.76191 * 100.00305 * 185.66039 * 9 7 2 11 11 C 1.39113 * 120.19193 * 6.85265 * 10 9 7 12 12 C 1.37912 * 120.05009 * 180.30118 * 11 10 9 13 13 C 1.38652 * 120.43925 * 359.68297 * 12 11 10 14 14 C 1.37806 * 120.38435 * 359.97438 * 13 12 11 15 15 C 1.39684 * 119.93761 * 0.03066 * 14 13 12 16 16 C 1.47427 * 120.21824 * 180.02562 * 15 14 13 17 17 O 1.21603 * 119.99972 * 179.97438 * 16 15 14 18 18 N 1.34780 * 119.99564 * 359.97438 * 16 15 14 19 19 N 1.40096 * 119.99462 * 180.02562 * 18 16 15 20 20 C 1.35311 * 125.87012 * 359.97438 * 19 18 16 21 21 C 1.35357 * 106.17676 * 180.02562 * 20 19 18 22 22 N 1.33774 * 106.49548 * 0.02562 * 21 20 19 23 23 N 1.28640 * 108.88474 * 359.97438 * 22 21 20 24 24 H 0.97009 * 119.99285 * 359.97438 * 1 2 3 25 25 H 1.08000 * 119.97466 * 359.97438 * 11 10 9 26 26 H 1.08007 * 119.78069 * 179.70065 * 12 11 10 27 27 H 1.08005 * 119.81056 * 180.02562 * 13 12 11 28 28 H 1.07998 * 120.03355 * 180.02562 * 14 13 12 29 29 H 0.96994 * 120.00094 * 359.97438 * 18 16 15 30 30 H 1.07996 * 126.91386 * 0.02562 * 20 19 18 31 31 H 1.07994 * 126.75381 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4971 2.0462 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4399 0.6999 7 6 2.0094 -1.2022 -0.0005 8 1 3.0895 -1.2023 -0.0001 9 16 1.1284 -2.7281 -0.0005 10 6 2.4707 -3.8565 0.1698 11 6 3.7581 -3.3826 0.4006 12 6 4.8077 -4.2682 0.5273 13 6 4.5895 -5.6342 0.4328 14 6 3.3204 -6.1237 0.2115 15 6 2.2458 -5.2410 0.0806 16 6 0.8855 -5.7579 -0.1557 17 8 -0.0472 -4.9859 -0.2685 18 7 0.6758 -7.0862 -0.2465 19 7 -0.6168 -7.5774 -0.4716 20 6 -1.7354 -6.8296 -0.6148 21 6 -2.7503 -7.7031 -0.8124 22 7 -2.2101 -8.9265 -0.7802 23 7 -0.9446 -8.8177 -0.5768 24 1 -0.4849 0.8402 0.0004 25 1 3.9366 -2.3201 0.4754 26 1 5.8062 -3.8953 0.7016 27 1 5.4188 -6.3187 0.5340 28 1 3.1569 -7.1888 0.1393 29 1 1.4198 -7.7019 -0.1569 30 1 -1.8045 -5.7524 -0.5787 31 1 -3.7914 -7.4603 -0.9650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449961340.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:21 Heat of formation + Delta-G solvation = 124.342873 kcal Electronic energy + Delta-G solvation = -19643.858194 eV Core-core repulsion = 16441.359146 eV Total energy + Delta-G solvation = -3202.499048 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.058 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.43854 -41.33203 -39.19756 -36.82882 -34.79594 -33.34618 -32.21251 -31.88914 -31.32326 -27.87005 -25.78207 -24.17419 -23.91253 -23.26041 -21.90102 -20.15360 -19.78596 -18.78106 -17.88884 -17.51882 -17.14607 -16.69102 -16.06077 -16.01856 -15.72531 -15.51433 -15.37511 -14.79842 -14.57792 -13.75547 -13.37529 -13.08310 -13.00053 -12.93546 -12.83377 -12.64277 -12.25150 -12.07193 -11.70834 -11.49772 -11.39801 -10.60753 -10.48574 -10.41748 -10.11498 -9.92570 -8.54013 -8.49242 -6.28414 -0.23942 -0.21405 0.46155 0.49176 1.26355 1.37343 1.42221 1.45455 1.57947 1.63297 2.17577 2.61873 2.81572 2.94514 3.16303 3.41011 3.72935 3.88203 4.04444 4.19978 4.23571 4.44640 4.50285 4.57902 4.73813 5.01304 5.10040 5.25351 5.40958 5.47691 5.55878 5.63999 5.86899 6.04280 6.12383 6.73607 6.93916 7.26878 8.56302 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.018392 B = 0.005006 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.999515 B = 5591.529832 C = 7096.174940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.029 3.971 3 Si 0.990 3.010 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.603 4.603 8 H 0.099 0.901 9 S 0.083 5.917 10 C -0.064 4.064 11 C -0.171 4.171 12 C -0.057 4.057 13 C -0.154 4.154 14 C -0.050 4.050 15 C -0.172 4.172 16 C 0.561 3.439 17 O -0.515 6.515 18 N -0.491 5.491 19 N -0.093 5.093 20 C -0.040 4.040 21 C -0.040 4.040 22 N -0.277 5.277 23 N -0.115 5.115 24 H 0.277 0.723 25 H 0.124 0.876 26 H 0.153 0.847 27 H 0.169 0.831 28 H 0.163 0.837 29 H 0.452 0.548 30 H 0.208 0.792 31 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.120 -11.631 0.555 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.812 3.188 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.749 4.749 8 H 0.116 0.884 9 S 0.344 5.656 10 C -0.183 4.183 11 C -0.196 4.196 12 C -0.079 4.079 13 C -0.176 4.176 14 C -0.070 4.070 15 C -0.188 4.188 16 C 0.352 3.648 17 O -0.389 6.389 18 N -0.249 5.249 19 N 0.031 4.969 20 C -0.193 4.193 21 C -0.199 4.199 22 N -0.144 5.144 23 N -0.096 5.096 24 H 0.086 0.914 25 H 0.142 0.858 26 H 0.171 0.829 27 H 0.187 0.813 28 H 0.180 0.820 29 H 0.301 0.699 30 H 0.225 0.775 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.399 -12.339 0.377 13.474 hybrid contribution 1.339 2.336 0.129 2.696 sum 6.738 -10.003 0.506 12.071 Atomic orbital electron populations 1.70097 1.07941 1.29357 1.46161 1.26088 0.95811 1.03334 0.92542 0.85069 0.78591 0.76202 0.78982 1.19270 1.20042 1.17981 1.24237 0.97223 0.94053 1.59388 0.88375 1.84717 1.06023 0.95546 1.79352 1.22937 1.00254 0.96640 0.98450 1.21473 0.91883 1.01243 1.04990 1.21637 0.98781 0.93747 0.93712 1.21347 0.97373 0.95305 1.03607 1.21484 0.91596 0.99227 0.94687 1.18670 0.90668 0.92198 1.17255 1.18992 0.90421 0.79126 0.76276 1.90767 1.43462 1.55438 1.49268 1.45402 0.95602 1.07519 1.76328 1.46160 1.00649 1.05429 1.44651 1.24609 0.84016 1.02309 1.08322 1.24191 1.02502 0.87068 1.06105 1.75109 0.98335 1.23055 1.17907 1.78426 1.10686 0.97429 1.23052 0.91387 0.85816 0.82912 0.81336 0.82003 0.69945 0.77545 0.74899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.73 13.22 21.65 0.29 -51.45 16 2 C 0.03 1.54 5.49 84.87 0.47 2.00 16 3 Si 0.99 41.11 29.55 68.60 2.03 43.14 16 4 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 7 C -0.60 -32.32 9.00 67.96 0.61 -31.71 16 8 H 0.10 4.92 4.98 -2.91 -0.01 4.91 16 9 S 0.08 4.29 18.56 -56.49 -1.05 3.24 16 10 C -0.06 -2.61 6.14 23.04 0.14 -2.47 16 11 C -0.17 -6.14 9.22 22.40 0.21 -5.94 16 12 C -0.06 -1.43 10.02 22.29 0.22 -1.20 16 13 C -0.15 -2.99 10.02 22.27 0.22 -2.77 16 14 C -0.05 -1.08 9.53 22.52 0.21 -0.87 16 15 C -0.17 -5.60 5.89 -19.95 -0.12 -5.72 16 16 C 0.56 18.94 7.82 86.66 0.68 19.62 16 17 O -0.51 -21.44 10.89 -4.04 -0.04 -21.49 16 18 N -0.49 -13.08 6.58 -175.88 -1.16 -14.24 16 19 N -0.09 -2.81 4.54 -57.35 -0.26 -3.07 16 20 C -0.04 -1.23 10.50 83.49 0.88 -0.35 16 21 C -0.04 -1.04 12.05 83.73 1.01 -0.03 16 22 N -0.28 -8.40 12.41 -58.25 -0.72 -9.12 16 23 N -0.12 -3.55 13.34 37.02 0.49 -3.05 16 24 H 0.28 14.74 8.31 -92.70 -0.77 13.97 16 25 H 0.12 4.89 5.03 -2.91 -0.01 4.87 16 26 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 27 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 28 H 0.16 1.94 6.40 -2.91 -0.02 1.92 16 29 H 0.45 8.24 6.86 -213.33 -1.46 6.78 16 30 H 0.21 6.78 5.85 -2.91 -0.02 6.77 16 31 H 0.23 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -71.46 287.72 3.86 -67.60 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.25 Total: 17.88 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.53 Total: -29.43 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.36 Total: -80.94 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.04 Total: -21.49 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.05 Total: 3.24 kcal Total: -71.46 3.86 -67.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449961340.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.944 kcal (2) G-P(sol) polarization free energy of solvation -71.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds