Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00381 * 2 1 4 4 H 1.48494 * 109.46892 * 269.99862 * 3 2 1 5 5 H 1.48497 * 109.46845 * 29.99675 * 3 2 1 6 6 H 1.48498 * 109.47210 * 149.99324 * 3 2 1 7 7 C 1.38736 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99601 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00172 * 185.12368 * 9 7 2 11 11 C 1.39224 * 120.02059 * 265.25519 * 10 9 7 12 12 C 1.38136 * 120.20234 * 179.76301 * 11 10 9 13 13 C 1.38087 * 120.24039 * 0.51202 * 12 11 10 14 14 C 1.39633 * 120.04069 * 359.74616 * 13 12 11 15 15 C 1.47865 * 120.10041 * 180.02562 * 14 13 12 16 16 O 1.21548 * 119.99959 * 179.97438 * 15 14 13 17 17 N 1.34774 * 120.00091 * 359.97277 * 15 14 13 18 18 N 1.40092 * 120.00037 * 179.97438 * 17 15 14 19 19 C 1.35492 * 126.98150 * 359.69332 * 18 17 15 20 20 N 1.30526 * 107.30830 * 179.88896 * 19 18 17 21 21 N 1.28595 * 109.67037 * 0.37802 * 20 19 18 22 22 C 1.30521 * 109.67480 * 359.76233 * 21 20 19 23 23 C 1.38839 * 120.02036 * 85.53016 * 10 9 7 24 24 H 0.97003 * 119.99827 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.90054 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.87970 * 180.25545 * 12 11 10 27 27 H 1.08002 * 119.97998 * 179.76188 * 13 12 11 28 28 H 0.97004 * 120.00038 * 0.02562 * 17 15 14 29 29 H 1.07997 * 126.34863 * 0.02562 * 19 18 17 30 30 H 1.07999 * 126.34313 * 179.97438 * 22 21 20 31 31 H 1.08000 * 120.11935 * 359.95801 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0099 -1.2015 0.0005 8 1 3.0899 -1.2014 0.0010 9 16 1.1288 -2.7274 0.0005 10 6 2.4725 -3.8565 0.1563 11 6 3.0330 -4.4332 -0.9802 12 6 4.0896 -5.3151 -0.8628 13 6 4.5902 -5.6388 0.3828 14 6 4.0322 -5.0705 1.5297 15 6 4.5676 -5.4158 2.8641 16 8 4.0808 -4.9196 3.8612 17 7 5.5953 -6.2806 2.9747 18 7 6.1028 -6.6073 4.2389 19 6 5.6753 -6.1367 5.4354 20 7 6.4125 -6.6933 6.3576 21 7 7.2755 -7.4734 5.8095 22 6 7.1248 -7.4537 4.5131 23 6 2.9692 -4.1761 1.4128 24 1 -0.4850 0.8401 -0.0004 25 1 2.6432 -4.1871 -1.9569 26 1 4.5232 -5.7563 -1.7481 27 1 5.4140 -6.3318 0.4699 28 1 5.9840 -6.6763 2.1789 29 1 4.8718 -5.4332 5.5965 30 1 7.7071 -8.0088 3.7926 31 1 2.5339 -3.7331 2.2963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466429468.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = 116.321909 kcal Electronic energy + Delta-G solvation = -19132.499708 eV Core-core repulsion = 15929.652844 eV Total energy + Delta-G solvation = -3202.846864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.058 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.46538 -40.45864 -38.29855 -36.14805 -32.63208 -32.50109 -30.98552 -30.84321 -30.33273 -25.69832 -24.82426 -23.15503 -23.09134 -22.37311 -20.77493 -19.29190 -18.38001 -17.46377 -16.76417 -16.42265 -15.84719 -15.53027 -15.10721 -14.96038 -14.80499 -14.71830 -14.35508 -13.72111 -13.14581 -12.70046 -12.18370 -12.02736 -11.93130 -11.44690 -11.30371 -11.18028 -10.86603 -10.78624 -10.48797 -10.06661 -9.73234 -9.62437 -9.31447 -9.23771 -8.94480 -8.25843 -6.87207 -6.40761 -4.16715 0.68414 0.77393 1.35645 1.55155 2.49434 2.58344 3.04999 3.13433 3.20080 3.26786 3.33920 3.77777 4.06705 4.10183 4.28304 4.67328 4.86001 4.86794 4.95224 4.98100 5.12249 5.31767 5.41844 5.55012 5.63973 5.76531 5.92007 6.18498 6.32685 6.49405 6.65182 6.69541 6.87437 7.45314 7.56983 8.19732 8.37159 9.05318 10.65916 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.003663 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.304518 B = 7642.826720 C = 8342.156939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.525 4.525 8 H 0.077 0.923 9 S -0.028 6.028 10 C -0.104 4.104 11 C -0.045 4.045 12 C -0.136 4.136 13 C -0.088 4.088 14 C -0.149 4.149 15 C 0.574 3.426 16 O -0.509 6.509 17 N -0.521 5.521 18 N -0.274 5.274 19 C 0.178 3.822 20 N -0.294 5.294 21 N -0.281 5.281 22 C 0.136 3.864 23 C -0.009 4.009 24 H 0.271 0.729 25 H 0.136 0.864 26 H 0.129 0.871 27 H 0.118 0.882 28 H 0.435 0.565 29 H 0.240 0.760 30 H 0.224 0.776 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.930 -13.220 -1.289 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.134 4.134 3 Si 0.747 3.253 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.672 4.672 8 H 0.095 0.905 9 S 0.207 5.793 10 C -0.215 4.215 11 C -0.066 4.066 12 C -0.156 4.156 13 C -0.108 4.108 14 C -0.156 4.156 15 C 0.365 3.635 16 O -0.382 6.382 17 N -0.274 5.274 18 N -0.052 5.052 19 C -0.109 4.109 20 N -0.135 5.135 21 N -0.122 5.122 22 C -0.152 4.152 23 C -0.031 4.031 24 H 0.081 0.919 25 H 0.154 0.846 26 H 0.147 0.853 27 H 0.136 0.864 28 H 0.279 0.721 29 H 0.256 0.744 30 H 0.240 0.760 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.750 -13.241 0.693 16.458 hybrid contribution 1.675 1.246 -1.709 2.698 sum 11.425 -11.995 -1.015 16.596 Atomic orbital electron populations 1.69972 1.05935 1.27906 1.46470 1.25010 0.95138 0.99188 0.94109 0.86107 0.79520 0.81116 0.78519 1.20080 1.20543 1.19541 1.22829 0.94869 0.90061 1.59463 0.90527 1.83713 1.03653 0.97097 1.94871 1.22943 1.02989 1.01989 0.93568 1.22096 0.92711 0.92637 0.99172 1.21095 0.97976 0.99640 0.96903 1.21113 0.98687 0.98592 0.92368 1.19326 1.01795 1.04907 0.89530 1.18876 0.77257 0.76677 0.90724 1.90740 1.58149 1.51620 1.37718 1.45442 1.36217 1.49062 0.96686 1.45680 1.25952 1.33912 0.99694 1.27581 1.03021 1.02376 0.77958 1.74493 1.05064 1.09339 1.24597 1.74371 1.18032 1.16748 1.03008 1.26642 0.93076 0.98348 0.97103 1.22005 0.91198 0.91245 0.98688 0.91879 0.84577 0.85307 0.86436 0.72060 0.74396 0.75967 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.33 13.22 55.49 0.73 -23.60 16 2 C 0.08 2.01 5.49 -17.46 -0.10 1.91 16 3 Si 0.92 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.52 -13.93 9.46 30.92 0.29 -13.64 16 8 H 0.08 2.00 7.79 -52.49 -0.41 1.59 16 9 S -0.03 -0.67 21.40 -107.50 -2.30 -2.97 16 10 C -0.10 -1.95 5.45 -38.99 -0.21 -2.17 16 11 C -0.05 -0.68 9.79 -39.25 -0.38 -1.07 16 12 C -0.14 -1.53 10.02 -39.67 -0.40 -1.93 16 13 C -0.09 -0.90 9.54 -39.12 -0.37 -1.27 16 14 C -0.15 -1.99 5.87 -105.00 -0.62 -2.61 16 15 C 0.57 7.40 7.85 -12.32 -0.10 7.30 16 16 O -0.51 -8.14 13.58 5.32 0.07 -8.07 16 17 N -0.52 -4.84 6.44 30.53 0.20 -4.64 16 18 N -0.27 -3.02 3.87 -15.17 -0.06 -3.08 16 19 C 0.18 2.39 11.64 -89.94 -1.05 1.34 16 20 N -0.29 -4.38 12.21 29.69 0.36 -4.02 16 21 N -0.28 -3.78 12.21 29.69 0.36 -3.42 16 22 C 0.14 1.29 13.00 -89.94 -1.17 0.13 16 23 C -0.01 -0.16 9.34 -38.92 -0.36 -0.53 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 26 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.12 0.65 6.40 -52.49 -0.34 0.31 16 28 H 0.43 2.24 6.86 -182.60 -1.25 0.99 16 29 H 0.24 3.20 5.94 -52.49 -0.31 2.89 16 30 H 0.22 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.14 2.71 7.65 -52.49 -0.40 2.31 16 LS Contribution 298.41 15.07 4.50 4.50 Total: -1.00 -33.01 298.41 -8.74 -41.74 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -3.11 Total: 0.59 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -4.46 Total: -12.53 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 1.60 Total: -38.76 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.07 Total: -8.07 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -2.30 Total: -2.97 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.01 -8.74 -41.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466429468.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.063 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds