Wall clock time and date at job start Tue Mar 31 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 120.00381 * 2 1 4 4 H 1.48494 * 109.46892 * 269.99862 * 3 2 1 5 5 H 1.48497 * 109.46845 * 29.99675 * 3 2 1 6 6 H 1.48498 * 109.47210 * 149.99324 * 3 2 1 7 7 C 1.38736 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99601 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00172 * 185.12368 * 9 7 2 11 11 C 1.39224 * 120.02059 * 265.25519 * 10 9 7 12 12 C 1.38136 * 120.20234 * 179.76301 * 11 10 9 13 13 C 1.38087 * 120.24039 * 0.51202 * 12 11 10 14 14 C 1.39633 * 120.04069 * 359.74616 * 13 12 11 15 15 C 1.47865 * 120.10041 * 180.02562 * 14 13 12 16 16 O 1.21548 * 119.99959 * 179.97438 * 15 14 13 17 17 N 1.34774 * 120.00091 * 359.97277 * 15 14 13 18 18 N 1.40092 * 120.00037 * 179.97438 * 17 15 14 19 19 C 1.35492 * 126.98150 * 359.69332 * 18 17 15 20 20 N 1.30526 * 107.30830 * 179.88896 * 19 18 17 21 21 N 1.28595 * 109.67037 * 0.37802 * 20 19 18 22 22 C 1.30521 * 109.67480 * 359.76233 * 21 20 19 23 23 C 1.38839 * 120.02036 * 85.53016 * 10 9 7 24 24 H 0.97003 * 119.99827 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.90054 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.87970 * 180.25545 * 12 11 10 27 27 H 1.08002 * 119.97998 * 179.76188 * 13 12 11 28 28 H 0.97004 * 120.00038 * 0.02562 * 17 15 14 29 29 H 1.07997 * 126.34863 * 0.02562 * 19 18 17 30 30 H 1.07999 * 126.34313 * 179.97438 * 22 21 20 31 31 H 1.08000 * 120.11935 * 359.95801 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0099 -1.2015 0.0005 8 1 3.0899 -1.2014 0.0010 9 16 1.1288 -2.7274 0.0005 10 6 2.4725 -3.8565 0.1563 11 6 3.0330 -4.4332 -0.9802 12 6 4.0896 -5.3151 -0.8628 13 6 4.5902 -5.6388 0.3828 14 6 4.0322 -5.0705 1.5297 15 6 4.5676 -5.4158 2.8641 16 8 4.0808 -4.9196 3.8612 17 7 5.5953 -6.2806 2.9747 18 7 6.1028 -6.6073 4.2389 19 6 5.6753 -6.1367 5.4354 20 7 6.4125 -6.6933 6.3576 21 7 7.2755 -7.4734 5.8095 22 6 7.1248 -7.4537 4.5131 23 6 2.9692 -4.1761 1.4128 24 1 -0.4850 0.8401 -0.0004 25 1 2.6432 -4.1871 -1.9569 26 1 4.5232 -5.7563 -1.7481 27 1 5.4140 -6.3318 0.4699 28 1 5.9840 -6.6763 2.1789 29 1 4.8718 -5.4332 5.5965 30 1 7.7071 -8.0088 3.7926 31 1 2.5339 -3.7331 2.2963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466429468.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:08 Heat of formation + Delta-G solvation = 95.621590 kcal Electronic energy + Delta-G solvation = -19133.397341 eV Core-core repulsion = 15929.652844 eV Total energy + Delta-G solvation = -3203.744497 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.058 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.37977 -41.50163 -39.39616 -37.12877 -34.65960 -33.53755 -32.05370 -31.80964 -31.36083 -27.74919 -25.85363 -24.18978 -24.00420 -23.43216 -21.83613 -20.17898 -19.96952 -18.85708 -17.68067 -17.47984 -16.94239 -16.88769 -16.61194 -16.14469 -15.93376 -15.71237 -15.56072 -14.92889 -14.64122 -13.94253 -13.31527 -13.22300 -13.09627 -12.98882 -12.97505 -12.72774 -12.44509 -11.79740 -11.70511 -11.54371 -11.23033 -10.80927 -10.67278 -10.52965 -10.02475 -9.75075 -8.81778 -8.40377 -6.20274 -0.38982 -0.08965 0.20017 0.66615 1.29169 1.37173 1.44099 1.48470 1.65201 1.67338 2.22009 2.41297 2.68773 2.93499 3.17529 3.40042 3.56850 3.84850 3.89824 4.02298 4.07046 4.26807 4.31238 4.39811 4.59324 4.87123 4.90658 5.07644 5.27123 5.37818 5.46553 5.67290 5.76127 5.89394 6.14773 6.67514 7.00895 7.45364 8.66492 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021796 B = 0.003663 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.304518 B = 7642.826720 C = 8342.156939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.070 0.930 9 S -0.094 6.094 10 C -0.129 4.129 11 C -0.054 4.054 12 C -0.118 4.118 13 C -0.055 4.055 14 C -0.145 4.145 15 C 0.576 3.424 16 O -0.548 6.548 17 N -0.492 5.492 18 N -0.279 5.279 19 C 0.164 3.836 20 N -0.324 5.324 21 N -0.324 5.324 22 C 0.171 3.829 23 C -0.035 4.035 24 H 0.274 0.726 25 H 0.136 0.864 26 H 0.181 0.819 27 H 0.184 0.816 28 H 0.458 0.542 29 H 0.230 0.770 30 H 0.283 0.717 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.709 -15.563 -3.213 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.683 4.683 8 H 0.088 0.912 9 S 0.141 5.859 10 C -0.241 4.241 11 C -0.075 4.075 12 C -0.137 4.137 13 C -0.073 4.073 14 C -0.152 4.152 15 C 0.366 3.634 16 O -0.424 6.424 17 N -0.247 5.247 18 N -0.057 5.057 19 C -0.125 4.125 20 N -0.164 5.164 21 N -0.163 5.163 22 C -0.117 4.117 23 C -0.057 4.057 24 H 0.083 0.917 25 H 0.154 0.846 26 H 0.198 0.802 27 H 0.202 0.798 28 H 0.309 0.691 29 H 0.246 0.754 30 H 0.298 0.702 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 13.569 -15.633 -1.249 20.738 hybrid contribution 0.637 1.748 -1.137 2.180 sum 14.206 -13.886 -2.386 20.008 Atomic orbital electron populations 1.70099 1.07513 1.28791 1.47799 1.25971 0.95989 1.02821 0.93674 0.85080 0.78083 0.76644 0.79045 1.18750 1.20028 1.19226 1.23077 0.94720 0.91580 1.58972 0.91171 1.83597 1.08493 0.98556 1.95301 1.22499 1.03087 1.02817 0.95652 1.22183 0.94045 0.93470 0.97759 1.21597 0.95552 0.97308 0.99252 1.21797 0.98407 0.96897 0.90237 1.19290 1.00614 1.04082 0.91214 1.18744 0.77756 0.76921 0.89966 1.90752 1.59582 1.53198 1.38880 1.45014 1.35017 1.47882 0.96835 1.45677 1.26283 1.34111 0.99614 1.27392 1.03203 1.02831 0.79062 1.74430 1.05929 1.10248 1.25824 1.74292 1.18871 1.17900 1.05221 1.27717 0.91198 0.95961 0.96794 1.21652 0.93495 0.93604 0.96976 0.91728 0.84611 0.80211 0.79849 0.69149 0.75407 0.70172 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.00 13.22 21.64 0.29 -52.72 16 2 C 0.02 1.15 5.49 84.84 0.47 1.62 16 3 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.54 -29.84 9.46 67.94 0.64 -29.20 16 8 H 0.07 3.83 7.79 -2.91 -0.02 3.80 16 9 S -0.09 -4.81 21.40 -56.49 -1.21 -6.02 16 10 C -0.13 -5.00 5.45 22.65 0.12 -4.87 16 11 C -0.05 -1.54 9.79 22.48 0.22 -1.32 16 12 C -0.12 -2.00 10.02 22.21 0.22 -1.78 16 13 C -0.05 -0.79 9.54 22.57 0.22 -0.57 16 14 C -0.15 -3.54 5.87 -20.11 -0.12 -3.66 16 15 C 0.58 13.64 7.85 86.79 0.68 14.32 16 16 O -0.55 -17.83 13.58 -3.87 -0.05 -17.88 16 17 N -0.49 -6.93 6.44 -175.59 -1.13 -8.06 16 18 N -0.28 -5.24 3.87 -201.91 -0.78 -6.02 16 19 C 0.16 4.32 11.64 180.11 2.10 6.41 16 20 N -0.32 -9.53 12.21 -59.99 -0.73 -10.27 16 21 N -0.32 -8.05 12.21 -59.99 -0.73 -8.78 16 22 C 0.17 2.51 13.00 180.11 2.34 4.86 16 23 C -0.04 -1.26 9.34 22.70 0.21 -1.05 16 24 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 26 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 27 H 0.18 0.25 6.40 -2.91 -0.02 0.23 16 28 H 0.46 1.44 6.86 -213.32 -1.46 -0.03 16 29 H 0.23 6.41 5.94 -2.91 -0.02 6.40 16 30 H 0.28 0.28 8.06 -2.91 -0.02 0.26 16 31 H 0.11 4.54 7.65 -2.91 -0.02 4.52 16 Total: -1.00 -81.66 298.41 4.51 -77.15 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -0.26 Total: 2.81 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 7.10 Total: -15.24 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -3.09 Total: -85.85 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.05 Total: -17.88 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -4.81 SS G_CDS: -1.21 Total: -6.02 kcal Total: -81.66 4.51 -77.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466429468.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.773 kcal (2) G-P(sol) polarization free energy of solvation -81.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds