Wall clock time and date at job start Tue Mar 31 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35048 * 126.03499 * 2 1 4 4 C 1.35373 * 107.72488 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 126.04558 * 179.97438 * 4 3 2 6 6 C 1.39925 * 107.91005 * 0.02562 * 4 3 2 7 7 C 1.50704 * 125.89605 * 179.73559 * 6 4 3 8 8 O 1.45201 * 109.47165 * 89.99597 * 7 6 4 9 9 C 1.34226 * 116.99611 * 179.97438 * 8 7 6 10 10 O 1.20827 * 120.00564 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99671 * 180.02562 * 9 8 7 12 12 S 1.81001 * 109.47139 * 180.02562 * 11 9 8 13 13 C 1.76198 * 100.00175 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99774 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00244 * 179.97438 * 13 12 11 16 16 N 1.31625 * 120.00010 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99860 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47052 * 89.99775 * 17 15 13 19 19 H 1.48497 * 109.46843 * 209.99866 * 17 15 13 20 20 H 1.48503 * 109.46910 * 329.99449 * 17 15 13 21 21 N 1.30849 * 108.21454 * 359.97438 * 6 4 3 22 22 H 1.09000 * 109.47272 * 89.99379 * 1 2 3 23 23 H 1.09002 * 109.47484 * 210.00091 * 1 2 3 24 24 H 1.09010 * 109.46838 * 329.99484 * 1 2 3 25 25 H 1.08001 * 126.13754 * 0.04147 * 3 2 1 26 26 H 1.09002 * 109.47334 * 210.00082 * 7 6 4 27 27 H 1.09004 * 109.47025 * 329.99764 * 7 6 4 28 28 H 1.08998 * 109.47055 * 300.00226 * 11 9 8 29 29 H 1.08999 * 109.47592 * 60.00245 * 11 9 8 30 30 H 0.97003 * 120.00345 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.0921 0.0000 4 6 3.5446 0.6668 -0.0006 5 17 4.9554 1.6784 -0.0014 6 6 3.5349 -0.7324 -0.0015 7 6 4.7495 -1.6245 -0.0081 8 8 5.1462 -1.9120 1.3588 9 6 6.2193 -2.7002 1.5288 10 8 6.8078 -3.1353 0.5674 11 6 6.6900 -3.0426 2.9189 12 16 8.1464 -4.1124 2.8164 13 6 8.4743 -4.3483 4.5314 14 1 7.8415 -3.8809 5.2714 15 6 9.5458 -5.1346 4.9315 16 7 9.7910 -5.3103 6.2127 17 14 10.6407 -5.9424 3.6516 18 1 11.7598 -5.0282 3.3096 19 1 11.1868 -7.2110 4.1970 20 1 9.8457 -6.2301 2.4307 21 7 2.2891 -1.1327 -0.0010 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5140 25 1 1.9288 2.1202 0.0006 26 1 4.5130 -2.5566 -0.5214 27 1 5.5667 -1.1219 -0.5255 28 1 6.9488 -2.1271 3.4507 29 1 5.8948 -3.5613 3.4544 30 1 10.5400 -5.8596 6.4923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525863220.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:57 Heat of formation + Delta-G solvation = -9.647142 kcal Electronic energy + Delta-G solvation = -17493.005543 eV Core-core repulsion = 14249.970651 eV Total energy + Delta-G solvation = -3243.034892 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.73392 -40.05004 -36.70384 -36.32211 -33.94972 -32.46738 -30.69721 -30.15540 -28.62318 -25.73720 -25.50730 -21.76414 -21.26347 -20.45719 -17.97193 -17.68216 -17.21558 -16.37046 -16.03215 -15.79098 -15.00728 -14.87666 -14.62422 -14.08502 -13.76950 -13.50492 -13.29221 -13.08170 -12.84178 -12.28940 -12.14493 -11.91516 -11.71352 -11.30261 -11.02747 -10.83543 -10.71999 -10.56393 -10.25627 -9.86927 -9.81251 -9.02934 -8.79023 -8.58506 -6.99107 -6.30959 -4.04900 1.22755 1.58661 1.83328 2.39596 2.56241 2.65400 3.24000 3.32173 3.48184 3.57324 4.02414 4.19559 4.30712 4.44864 4.65369 4.74419 4.78828 4.92895 5.05491 5.07901 5.12853 5.38695 5.42831 5.70254 5.82564 6.00274 6.35411 6.56368 7.09277 7.91940 8.05194 8.40915 9.14192 10.78143 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.031127 B = 0.003142 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.312326 B = 8909.732576 C = 9163.304318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.364 5.364 3 C 0.071 3.929 4 C -0.169 4.169 5 Cl -0.032 7.032 6 C 0.089 3.911 7 C 0.147 3.853 8 O -0.350 6.350 9 C 0.482 3.518 10 O -0.488 6.488 11 C -0.098 4.098 12 S -0.138 6.138 13 C -0.522 4.522 14 H 0.092 0.908 15 C 0.097 3.903 16 N -0.878 5.878 17 Si 0.856 3.144 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.235 1.235 21 N -0.256 5.256 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.188 0.812 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.856 14.732 -13.626 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.147 5.147 3 C -0.076 4.076 4 C -0.208 4.208 5 Cl -0.004 7.004 6 C -0.078 4.078 7 C 0.071 3.929 8 O -0.267 6.267 9 C 0.323 3.677 10 O -0.373 6.373 11 C -0.246 4.246 12 S 0.088 5.912 13 C -0.669 4.669 14 H 0.110 0.890 15 C -0.112 4.112 16 N -0.514 5.514 17 Si 0.681 3.319 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.159 1.159 21 N -0.081 5.081 22 H 0.099 0.901 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.205 0.795 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.866 13.207 -14.700 27.321 hybrid contribution 0.444 0.987 0.727 1.304 sum -18.423 14.194 -13.972 27.131 Atomic orbital electron populations 1.22003 0.72757 1.05220 1.03926 1.48340 1.07007 1.03380 1.55942 1.22248 0.89443 0.94153 1.01792 1.20682 0.89117 0.91107 1.19896 1.98354 1.37432 1.66926 1.97650 1.21725 0.93046 0.91894 1.01126 1.20947 0.91482 0.98123 0.82334 1.86545 1.46065 1.63880 1.30232 1.23271 0.77093 0.74883 0.92455 1.90672 1.54669 1.49787 1.42219 1.23010 1.03683 1.05461 0.92460 1.84788 1.31820 1.61451 1.13172 1.22271 1.18585 1.37289 0.88791 0.89047 1.24693 0.96310 0.94838 0.95353 1.69931 1.29313 1.37916 1.14253 0.86747 0.82216 0.79857 0.83101 1.19110 1.19834 1.15897 1.77502 1.00278 1.07659 1.22641 0.90150 0.88627 0.88870 0.79547 0.89114 0.88595 0.87066 0.87093 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.40 11.47 59.85 0.69 1.08 16 2 N -0.36 -3.23 4.02 -68.12 -0.27 -3.51 16 3 C 0.07 0.58 11.47 -17.16 -0.20 0.39 16 4 C -0.17 -1.89 6.64 -39.97 -0.27 -2.15 16 5 Cl -0.03 -0.35 29.02 -51.86 -1.50 -1.85 16 6 C 0.09 1.16 6.86 -82.38 -0.57 0.59 16 7 C 0.15 2.06 5.89 36.01 0.21 2.28 16 8 O -0.35 -5.79 10.20 -39.25 -0.40 -6.19 16 9 C 0.48 9.07 7.98 36.01 0.29 9.36 16 10 O -0.49 -10.25 15.61 -18.75 -0.29 -10.54 16 11 C -0.10 -1.97 6.27 36.01 0.23 -1.74 16 12 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 13 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 14 H 0.09 2.73 8.03 -52.48 -0.42 2.31 16 15 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 16 N -0.88 -26.38 13.97 55.49 0.78 -25.61 16 17 Si 0.86 21.53 27.74 -169.99 -4.72 16.81 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.23 -5.87 6.74 56.52 0.38 -5.48 16 21 N -0.26 -3.25 12.57 33.68 0.42 -2.82 16 22 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 23 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 0.11 8.14 -51.92 -0.42 -0.31 16 25 H 0.19 0.77 8.06 -52.49 -0.42 0.35 16 26 H 0.09 1.23 8.13 -51.93 -0.42 0.80 16 27 H 0.10 1.27 8.00 -51.93 -0.42 0.86 16 28 H 0.11 2.08 8.14 -51.92 -0.42 1.66 16 29 H 0.11 2.09 8.14 -51.92 -0.42 1.66 16 30 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -34.57 305.99 -5.72 -40.29 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: -2.95 Total: -3.61 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 0.60 Total: -2.11 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.93 Total: -31.94 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.69 Total: -16.73 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.72 Total: 16.81 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.50 Total: -1.85 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.57 -5.72 -40.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525863220.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.642 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds