Wall clock time and date at job start Tue Mar 31 2020 05:45:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.35048 * 126.03499 * 2 1
4 4 C 1.35373 * 107.72488 * 180.02562 * 3 2 1
5 5 Cl 1.73599 * 126.04558 * 179.97438 * 4 3 2
6 6 C 1.39925 * 107.91005 * 0.02562 * 4 3 2
7 7 C 1.50704 * 125.89605 * 179.73559 * 6 4 3
8 8 O 1.45201 * 109.47165 * 89.99597 * 7 6 4
9 9 C 1.34226 * 116.99611 * 179.97438 * 8 7 6
10 10 O 1.20827 * 120.00564 * 0.02562 * 9 8 7
11 11 C 1.50705 * 119.99671 * 180.02562 * 9 8 7
12 12 S 1.81001 * 109.47139 * 180.02562 * 11 9 8
13 13 C 1.76198 * 100.00175 * 179.97438 * 12 11 9
14 14 H 1.08003 * 119.99774 * 359.97438 * 13 12 11
15 15 C 1.38797 * 120.00244 * 179.97438 * 13 12 11
16 16 N 1.31625 * 120.00010 * 179.97438 * 15 13 12
17 17 Si 1.86802 * 119.99860 * 0.02562 * 15 13 12
18 18 H 1.48497 * 109.47052 * 89.99775 * 17 15 13
19 19 H 1.48497 * 109.46843 * 209.99866 * 17 15 13
20 20 H 1.48503 * 109.46910 * 329.99449 * 17 15 13
21 21 N 1.30849 * 108.21454 * 359.97438 * 6 4 3
22 22 H 1.09000 * 109.47272 * 89.99379 * 1 2 3
23 23 H 1.09002 * 109.47484 * 210.00091 * 1 2 3
24 24 H 1.09010 * 109.46838 * 329.99484 * 1 2 3
25 25 H 1.08001 * 126.13754 * 0.04147 * 3 2 1
26 26 H 1.09002 * 109.47334 * 210.00082 * 7 6 4
27 27 H 1.09004 * 109.47025 * 329.99764 * 7 6 4
28 28 H 1.08998 * 109.47055 * 300.00226 * 11 9 8
29 29 H 1.08999 * 109.47592 * 60.00245 * 11 9 8
30 30 H 0.97003 * 120.00345 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2594 1.0921 0.0000
4 6 3.5446 0.6668 -0.0006
5 17 4.9554 1.6784 -0.0014
6 6 3.5349 -0.7324 -0.0015
7 6 4.7495 -1.6245 -0.0081
8 8 5.1462 -1.9120 1.3588
9 6 6.2193 -2.7002 1.5288
10 8 6.8078 -3.1353 0.5674
11 6 6.6900 -3.0426 2.9189
12 16 8.1464 -4.1124 2.8164
13 6 8.4743 -4.3483 4.5314
14 1 7.8415 -3.8809 5.2714
15 6 9.5458 -5.1346 4.9315
16 7 9.7910 -5.3103 6.2127
17 14 10.6407 -5.9424 3.6516
18 1 11.7598 -5.0282 3.3096
19 1 11.1868 -7.2110 4.1970
20 1 9.8457 -6.2301 2.4307
21 7 2.2891 -1.1327 -0.0010
22 1 -0.3634 0.0001 -1.0276
23 1 -0.3634 -0.8900 0.5138
24 1 -0.3633 0.8900 0.5140
25 1 1.9288 2.1202 0.0006
26 1 4.5130 -2.5566 -0.5214
27 1 5.5667 -1.1219 -0.5255
28 1 6.9488 -2.1271 3.4507
29 1 5.8948 -3.5613 3.4544
30 1 10.5400 -5.8596 6.4923
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001525863220.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 05:45:56
Heat of formation + Delta-G solvation = -32.166028 kcal
Electronic energy + Delta-G solvation = -17493.982035 eV
Core-core repulsion = 14249.970651 eV
Total energy + Delta-G solvation = -3244.011384 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 290.028 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.50925 -41.48866 -37.77876 -37.45546 -34.69888 -34.67870 -31.81201 -31.22357
-29.63358 -27.88864 -26.32103 -22.69938 -22.45142 -21.36727 -19.96126 -18.82480
-18.36414 -17.74687 -17.27474 -17.02057 -16.64328 -15.96225 -15.67239 -15.52383
-14.97616 -14.88995 -14.44452 -14.12530 -13.69880 -13.52642 -13.40462 -13.27846
-13.01673 -12.78777 -12.65554 -12.54038 -11.91349 -11.90296 -11.72869 -11.56499
-11.17716 -10.63999 -10.62353 -9.54143 -9.06097 -8.52086 -6.25726 0.37022
0.76868 0.93767 1.04286 1.10169 1.33054 1.45883 1.53701 1.67722
2.03649 2.24768 2.65640 2.86105 3.24618 3.44730 3.77664 3.90938
4.05283 4.11262 4.19028 4.38739 4.40120 4.44364 4.62227 4.71960
4.97194 5.14931 5.70208 5.80072 6.11938 6.30447 6.57060 6.91768
8.60381
Molecular weight = 290.03amu
Principal moments of inertia in cm(-1)
A = 0.031127 B = 0.003142 C = 0.003055
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 899.312326 B = 8909.732576 C = 9163.304318
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.089 3.911
2 N -0.356 5.356
3 C 0.093 3.907
4 C -0.195 4.195
5 Cl -0.038 7.038
6 C 0.067 3.933
7 C 0.146 3.854
8 O -0.346 6.346
9 C 0.494 3.506
10 O -0.512 6.512
11 C -0.089 4.089
12 S -0.157 6.157
13 C -0.532 4.532
14 H 0.064 0.936
15 C 0.047 3.953
16 N -0.916 5.916
17 Si 0.914 3.086
18 H -0.260 1.260
19 H -0.259 1.259
20 H -0.233 1.233
21 N -0.291 5.291
22 H 0.098 0.902
23 H 0.092 0.908
24 H 0.128 0.872
25 H 0.232 0.768
26 H 0.091 0.909
27 H 0.100 0.900
28 H 0.126 0.874
29 H 0.125 0.875
30 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.392 15.997 -14.842 29.867
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.049 4.049
2 N -0.139 5.139
3 C -0.055 4.055
4 C -0.233 4.233
5 Cl -0.010 7.010
6 C -0.098 4.098
7 C 0.070 3.930
8 O -0.262 6.262
9 C 0.336 3.664
10 O -0.400 6.400
11 C -0.238 4.238
12 S 0.070 5.930
13 C -0.680 4.680
14 H 0.083 0.917
15 C -0.159 4.159
16 N -0.553 5.553
17 Si 0.736 3.264
18 H -0.185 1.185
19 H -0.183 1.183
20 H -0.157 1.157
21 N -0.117 5.117
22 H 0.116 0.884
23 H 0.111 0.889
24 H 0.146 0.854
25 H 0.248 0.752
26 H 0.109 0.891
27 H 0.118 0.882
28 H 0.144 0.856
29 H 0.143 0.857
30 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -20.435 14.474 -15.913 29.670
hybrid contribution 0.671 0.738 1.096 1.482
sum -19.764 15.211 -14.816 29.009
Atomic orbital electron populations
1.22469 0.69942 1.06852 1.05647 1.48798 1.08454 1.02585 1.54039
1.22908 0.88207 0.95654 0.98747 1.20856 0.90165 0.90434 1.21868
1.98346 1.38020 1.66810 1.97783 1.21570 0.92778 0.92611 1.02848
1.21096 0.92539 0.98674 0.80676 1.86512 1.44704 1.62825 1.32201
1.22850 0.77361 0.74789 0.91428 1.90665 1.55639 1.50924 1.42756
1.22938 1.01755 1.05132 0.93937 1.84608 1.34885 1.63224 1.10318
1.22417 1.18264 1.36937 0.90378 0.91729 1.25562 0.97664 0.95401
0.97238 1.70011 1.30317 1.38937 1.16050 0.85876 0.80425 0.79500
0.80647 1.18480 1.18276 1.15717 1.77410 1.00616 1.09876 1.23805
0.88355 0.88907 0.85378 0.75162 0.89115 0.88191 0.85593 0.85713
0.91227
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.40 11.47 127.77 1.47 1.87 16
2 N -0.36 -5.38 4.02 -369.42 -1.48 -6.87 16
3 C 0.09 1.24 11.47 83.54 0.96 2.20 16
4 C -0.19 -4.02 6.64 22.02 0.15 -3.88 16
5 Cl -0.04 -0.78 29.02 -2.72 -0.08 -0.86 16
6 C 0.07 1.69 6.86 43.12 0.30 1.99 16
7 C 0.15 4.05 5.89 71.24 0.42 4.47 16
8 O -0.35 -11.23 10.20 -51.38 -0.52 -11.76 16
9 C 0.49 18.28 7.98 71.24 0.57 18.85 16
10 O -0.51 -21.30 15.61 21.96 0.34 -20.96 16
11 C -0.09 -3.52 6.27 71.24 0.45 -3.08 16
12 S -0.16 -7.82 18.55 -56.49 -1.05 -8.87 16
13 C -0.53 -30.84 10.04 67.95 0.68 -30.16 16
14 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16
15 C 0.05 2.74 5.50 84.86 0.47 3.21 16
16 N -0.92 -55.58 13.97 21.65 0.30 -55.27 16
17 Si 0.91 44.23 27.74 68.60 1.90 46.14 16
18 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16
19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16
20 H -0.23 -11.16 6.74 99.48 0.67 -10.49 16
21 N -0.29 -7.05 12.57 -47.34 -0.60 -7.64 16
22 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16
23 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16
24 H 0.13 -0.28 8.14 -2.38 -0.02 -0.30 16
25 H 0.23 0.80 8.06 -2.91 -0.02 0.78 16
26 H 0.09 2.47 8.13 -2.39 -0.02 2.45 16
27 H 0.10 2.65 8.00 -2.39 -0.02 2.63 16
28 H 0.13 4.62 8.14 -2.40 -0.02 4.60 16
29 H 0.12 4.60 8.14 -2.40 -0.02 4.58 16
30 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16
Total: -1.00 -75.01 305.99 5.40 -69.61
By element:
Atomic # 1 Polarization: -0.12 SS G_CDS: 1.13 Total: 1.02 kcal
Atomic # 6 Polarization: -9.98 SS G_CDS: 5.45 Total: -4.53 kcal
Atomic # 7 Polarization: -68.01 SS G_CDS: -1.78 Total: -69.79 kcal
Atomic # 8 Polarization: -32.53 SS G_CDS: -0.18 Total: -32.71 kcal
Atomic # 14 Polarization: 44.23 SS G_CDS: 1.90 Total: 46.14 kcal
Atomic # 16 Polarization: -7.82 SS G_CDS: -1.05 Total: -8.87 kcal
Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal
Total: -75.01 5.40 -69.61 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001525863220.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.441 kcal
(2) G-P(sol) polarization free energy of solvation -75.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.564 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds