Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35048 * 126.03499 * 2 1 4 4 C 1.35373 * 107.72488 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 126.04558 * 179.97438 * 4 3 2 6 6 C 1.39925 * 107.91005 * 0.02562 * 4 3 2 7 7 C 1.50704 * 125.89605 * 179.73559 * 6 4 3 8 8 O 1.45201 * 109.47165 * 89.99597 * 7 6 4 9 9 C 1.34226 * 116.99611 * 179.97438 * 8 7 6 10 10 O 1.20827 * 120.00564 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99671 * 180.02562 * 9 8 7 12 12 S 1.81001 * 109.47139 * 180.02562 * 11 9 8 13 13 C 1.76198 * 100.00175 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99774 * 359.97438 * 13 12 11 15 15 C 1.38797 * 120.00244 * 179.97438 * 13 12 11 16 16 N 1.31625 * 120.00010 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99860 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47052 * 89.99775 * 17 15 13 19 19 H 1.48497 * 109.46843 * 209.99866 * 17 15 13 20 20 H 1.48503 * 109.46910 * 329.99449 * 17 15 13 21 21 N 1.30849 * 108.21454 * 359.97438 * 6 4 3 22 22 H 1.09000 * 109.47272 * 89.99379 * 1 2 3 23 23 H 1.09002 * 109.47484 * 210.00091 * 1 2 3 24 24 H 1.09010 * 109.46838 * 329.99484 * 1 2 3 25 25 H 1.08001 * 126.13754 * 0.04147 * 3 2 1 26 26 H 1.09002 * 109.47334 * 210.00082 * 7 6 4 27 27 H 1.09004 * 109.47025 * 329.99764 * 7 6 4 28 28 H 1.08998 * 109.47055 * 300.00226 * 11 9 8 29 29 H 1.08999 * 109.47592 * 60.00245 * 11 9 8 30 30 H 0.97003 * 120.00345 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.0921 0.0000 4 6 3.5446 0.6668 -0.0006 5 17 4.9554 1.6784 -0.0014 6 6 3.5349 -0.7324 -0.0015 7 6 4.7495 -1.6245 -0.0081 8 8 5.1462 -1.9120 1.3588 9 6 6.2193 -2.7002 1.5288 10 8 6.8078 -3.1353 0.5674 11 6 6.6900 -3.0426 2.9189 12 16 8.1464 -4.1124 2.8164 13 6 8.4743 -4.3483 4.5314 14 1 7.8415 -3.8809 5.2714 15 6 9.5458 -5.1346 4.9315 16 7 9.7910 -5.3103 6.2127 17 14 10.6407 -5.9424 3.6516 18 1 11.7598 -5.0282 3.3096 19 1 11.1868 -7.2110 4.1970 20 1 9.8457 -6.2301 2.4307 21 7 2.2891 -1.1327 -0.0010 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5140 25 1 1.9288 2.1202 0.0006 26 1 4.5130 -2.5566 -0.5214 27 1 5.5667 -1.1219 -0.5255 28 1 6.9488 -2.1271 3.4507 29 1 5.8948 -3.5613 3.4544 30 1 10.5400 -5.8596 6.4923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525863220.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = -32.166028 kcal Electronic energy + Delta-G solvation = -17493.982035 eV Core-core repulsion = 14249.970651 eV Total energy + Delta-G solvation = -3244.011384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 290.028 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.50925 -41.48866 -37.77876 -37.45546 -34.69888 -34.67870 -31.81201 -31.22357 -29.63358 -27.88864 -26.32103 -22.69938 -22.45142 -21.36727 -19.96126 -18.82480 -18.36414 -17.74687 -17.27474 -17.02057 -16.64328 -15.96225 -15.67239 -15.52383 -14.97616 -14.88995 -14.44452 -14.12530 -13.69880 -13.52642 -13.40462 -13.27846 -13.01673 -12.78777 -12.65554 -12.54038 -11.91349 -11.90296 -11.72869 -11.56499 -11.17716 -10.63999 -10.62353 -9.54143 -9.06097 -8.52086 -6.25726 0.37022 0.76868 0.93767 1.04286 1.10169 1.33054 1.45883 1.53701 1.67722 2.03649 2.24768 2.65640 2.86105 3.24618 3.44730 3.77664 3.90938 4.05283 4.11262 4.19028 4.38739 4.40120 4.44364 4.62227 4.71960 4.97194 5.14931 5.70208 5.80072 6.11938 6.30447 6.57060 6.91768 8.60381 Molecular weight = 290.03amu Principal moments of inertia in cm(-1) A = 0.031127 B = 0.003142 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.312326 B = 8909.732576 C = 9163.304318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.356 5.356 3 C 0.093 3.907 4 C -0.195 4.195 5 Cl -0.038 7.038 6 C 0.067 3.933 7 C 0.146 3.854 8 O -0.346 6.346 9 C 0.494 3.506 10 O -0.512 6.512 11 C -0.089 4.089 12 S -0.157 6.157 13 C -0.532 4.532 14 H 0.064 0.936 15 C 0.047 3.953 16 N -0.916 5.916 17 Si 0.914 3.086 18 H -0.260 1.260 19 H -0.259 1.259 20 H -0.233 1.233 21 N -0.291 5.291 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.128 0.872 25 H 0.232 0.768 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.392 15.997 -14.842 29.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.139 5.139 3 C -0.055 4.055 4 C -0.233 4.233 5 Cl -0.010 7.010 6 C -0.098 4.098 7 C 0.070 3.930 8 O -0.262 6.262 9 C 0.336 3.664 10 O -0.400 6.400 11 C -0.238 4.238 12 S 0.070 5.930 13 C -0.680 4.680 14 H 0.083 0.917 15 C -0.159 4.159 16 N -0.553 5.553 17 Si 0.736 3.264 18 H -0.185 1.185 19 H -0.183 1.183 20 H -0.157 1.157 21 N -0.117 5.117 22 H 0.116 0.884 23 H 0.111 0.889 24 H 0.146 0.854 25 H 0.248 0.752 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.435 14.474 -15.913 29.670 hybrid contribution 0.671 0.738 1.096 1.482 sum -19.764 15.211 -14.816 29.009 Atomic orbital electron populations 1.22469 0.69942 1.06852 1.05647 1.48798 1.08454 1.02585 1.54039 1.22908 0.88207 0.95654 0.98747 1.20856 0.90165 0.90434 1.21868 1.98346 1.38020 1.66810 1.97783 1.21570 0.92778 0.92611 1.02848 1.21096 0.92539 0.98674 0.80676 1.86512 1.44704 1.62825 1.32201 1.22850 0.77361 0.74789 0.91428 1.90665 1.55639 1.50924 1.42756 1.22938 1.01755 1.05132 0.93937 1.84608 1.34885 1.63224 1.10318 1.22417 1.18264 1.36937 0.90378 0.91729 1.25562 0.97664 0.95401 0.97238 1.70011 1.30317 1.38937 1.16050 0.85876 0.80425 0.79500 0.80647 1.18480 1.18276 1.15717 1.77410 1.00616 1.09876 1.23805 0.88355 0.88907 0.85378 0.75162 0.89115 0.88191 0.85593 0.85713 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 11.47 127.77 1.47 1.87 16 2 N -0.36 -5.38 4.02 -369.42 -1.48 -6.87 16 3 C 0.09 1.24 11.47 83.54 0.96 2.20 16 4 C -0.19 -4.02 6.64 22.02 0.15 -3.88 16 5 Cl -0.04 -0.78 29.02 -2.72 -0.08 -0.86 16 6 C 0.07 1.69 6.86 43.12 0.30 1.99 16 7 C 0.15 4.05 5.89 71.24 0.42 4.47 16 8 O -0.35 -11.23 10.20 -51.38 -0.52 -11.76 16 9 C 0.49 18.28 7.98 71.24 0.57 18.85 16 10 O -0.51 -21.30 15.61 21.96 0.34 -20.96 16 11 C -0.09 -3.52 6.27 71.24 0.45 -3.08 16 12 S -0.16 -7.82 18.55 -56.49 -1.05 -8.87 16 13 C -0.53 -30.84 10.04 67.95 0.68 -30.16 16 14 H 0.06 3.96 8.03 -2.91 -0.02 3.94 16 15 C 0.05 2.74 5.50 84.86 0.47 3.21 16 16 N -0.92 -55.58 13.97 21.65 0.30 -55.27 16 17 Si 0.91 44.23 27.74 68.60 1.90 46.14 16 18 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.23 -11.16 6.74 99.48 0.67 -10.49 16 21 N -0.29 -7.05 12.57 -47.34 -0.60 -7.64 16 22 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 23 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.13 -0.28 8.14 -2.38 -0.02 -0.30 16 25 H 0.23 0.80 8.06 -2.91 -0.02 0.78 16 26 H 0.09 2.47 8.13 -2.39 -0.02 2.45 16 27 H 0.10 2.65 8.00 -2.39 -0.02 2.63 16 28 H 0.13 4.62 8.14 -2.40 -0.02 4.60 16 29 H 0.12 4.60 8.14 -2.40 -0.02 4.58 16 30 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -75.01 305.99 5.40 -69.61 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: 1.13 Total: 1.02 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 5.45 Total: -4.53 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -1.78 Total: -69.79 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.18 Total: -32.71 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.90 Total: 46.14 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.05 Total: -8.87 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -75.01 5.40 -69.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525863220.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.441 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds