Wall clock time and date at job start Tue Mar 31 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86793 * 120.00314 * 2 1 4 4 H 1.48499 * 109.47004 * 239.99690 * 3 2 1 5 5 H 1.48504 * 109.47061 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47531 * 119.99009 * 3 2 1 7 7 C 1.40244 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00304 * 197.87061 * 7 2 1 9 9 C 1.41089 * 120.00044 * 17.87202 * 7 2 1 10 10 C 1.40898 * 120.10093 * 204.64391 * 9 7 2 11 11 C 1.36302 * 119.89895 * 180.02562 * 10 9 7 12 12 C 1.40067 * 120.10263 * 0.02562 * 11 10 9 13 13 C 1.47502 * 119.90001 * 179.97438 * 12 11 10 14 14 O 1.21509 * 120.00418 * 359.97438 * 13 12 11 15 15 O 1.34777 * 120.00085 * 179.97438 * 13 12 11 16 16 C 1.45197 * 117.00473 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47419 * 180.02562 * 16 15 13 18 18 N 1.29413 * 125.69723 * 89.97766 * 17 16 15 19 19 N 1.26395 * 116.47288 * 180.02562 * 18 17 16 20 20 C 1.29414 * 116.47973 * 359.97438 * 19 18 17 21 21 S 1.71220 * 108.60560 * 0.23095 * 20 19 18 22 22 C 1.40067 * 120.19440 * 0.25120 * 12 11 10 23 23 C 1.36295 * 120.10567 * 359.48624 * 22 12 11 24 24 H 0.97004 * 119.99502 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.05122 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.94897 * 179.97438 * 11 10 9 27 27 H 1.09005 * 109.47069 * 59.99712 * 16 15 13 28 28 H 1.09004 * 109.47282 * 300.00165 * 16 15 13 29 29 H 1.08000 * 125.69622 * 179.97438 * 20 19 18 30 30 H 1.08006 * 119.94672 * 179.74759 * 22 12 11 31 31 H 1.08006 * 120.05332 * 180.25686 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 3.0942 1.6962 -1.2125 5 1 1.2755 2.7464 -0.0006 6 1 3.0940 1.6964 1.2126 7 6 2.0075 -1.2146 0.0005 8 1 3.0485 -1.2371 0.2876 9 6 1.3531 -2.4071 -0.3739 10 6 1.8266 -3.6495 0.0926 11 6 1.1915 -4.7990 -0.2721 12 6 0.0701 -4.7467 -1.1098 13 6 -0.6133 -5.9935 -1.5022 14 8 -0.2032 -7.0640 -1.0992 15 8 -1.6928 -5.9455 -2.3077 16 6 -2.3145 -7.2114 -2.6532 17 6 -3.4964 -6.9613 -3.5540 18 7 -3.4636 -6.9130 -4.8468 19 7 -4.5625 -6.6907 -5.4304 20 6 -5.5986 -6.5366 -4.6705 21 16 -5.1058 -6.6877 -3.0377 22 6 -0.4005 -3.5144 -1.5807 23 6 0.2250 -2.3594 -1.2168 24 1 -0.4849 0.8401 -0.0004 25 1 2.6914 -3.6908 0.7382 26 1 1.5540 -5.7518 0.0847 27 1 -2.6492 -7.7117 -1.7444 28 1 -1.5913 -7.8423 -3.1700 29 1 -6.6052 -6.3408 -5.0094 30 1 -1.2631 -3.4790 -2.2297 31 1 -0.1412 -1.4093 -1.5770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001532064257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:38 Heat of formation + Delta-G solvation = -3.981454 kcal Electronic energy + Delta-G solvation = -19069.082663 eV Core-core repulsion = 15828.726303 eV Total energy + Delta-G solvation = -3240.356360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47467 -39.72114 -37.54951 -35.89728 -34.01446 -32.57957 -30.44202 -29.56857 -28.76394 -26.33844 -25.14910 -22.47138 -21.05221 -20.87694 -20.09760 -19.42015 -17.62078 -17.12866 -16.85900 -16.00807 -15.66089 -15.63242 -15.27708 -14.17010 -13.93724 -13.60148 -13.45989 -12.99267 -12.84068 -12.52502 -12.17543 -11.94484 -11.49294 -11.33524 -11.08440 -10.79489 -10.70432 -10.67389 -10.31747 -10.28798 -10.18855 -9.98747 -9.66675 -9.53598 -9.42237 -7.81869 -7.70575 -7.15504 -4.73751 0.11459 0.68199 1.12538 1.96691 2.26692 2.83864 2.89163 2.92149 2.97972 3.23843 3.53684 3.66421 3.92801 4.39739 4.45236 4.68170 5.08396 5.27426 5.29496 5.45907 5.82937 6.14302 6.19821 6.68177 6.74159 6.84904 6.92329 7.02321 7.35210 7.59888 7.71482 7.77202 7.94445 8.29154 8.30227 8.50322 8.58556 8.63379 9.75561 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.003409 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.584886 B = 8210.877564 C = 9079.466106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.432 4.432 8 H 0.088 0.912 9 C 0.132 3.868 10 C -0.239 4.239 11 C -0.015 4.015 12 C -0.276 4.276 13 C 0.519 3.481 14 O -0.549 6.549 15 O -0.354 6.354 16 C 0.148 3.852 17 C -0.014 4.014 18 N -0.241 5.241 19 N -0.258 5.258 20 C -0.050 4.050 21 S 0.204 5.796 22 C -0.042 4.042 23 C -0.184 4.184 24 H 0.290 0.710 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.216 0.784 30 H 0.100 0.900 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 -5.796 -2.998 11.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.459 4.459 8 H 0.106 0.894 9 C 0.129 3.871 10 C -0.258 4.258 11 C -0.034 4.034 12 C -0.279 4.279 13 C 0.371 3.629 14 O -0.442 6.442 15 O -0.271 6.271 16 C 0.070 3.930 17 C -0.293 4.293 18 N -0.082 5.082 19 N -0.095 5.095 20 C -0.348 4.348 21 S 0.445 5.555 22 C -0.061 4.061 23 C -0.203 4.203 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.233 0.767 30 H 0.118 0.882 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.962 -5.955 -3.211 12.042 hybrid contribution 0.085 0.666 -0.108 0.680 sum -9.877 -5.289 -3.319 11.685 Atomic orbital electron populations 1.69732 1.08031 1.30557 1.30091 1.26173 0.94869 1.02145 0.91826 0.86203 0.80218 0.79103 0.80491 1.18305 1.19899 1.18513 1.19933 0.98501 0.91177 1.36269 0.89391 1.17850 0.90258 0.92206 0.86823 1.20687 1.04702 0.92406 1.08034 1.20341 0.92345 0.97468 0.93236 1.18141 1.04641 0.88918 1.16159 1.21618 0.76514 0.90487 0.74235 1.90715 1.65817 1.31962 1.55715 1.86657 1.43887 1.32593 1.64006 1.20881 0.89839 0.86258 0.96026 1.28899 1.00143 1.05076 0.95135 1.71469 1.18273 1.13091 1.05359 1.71488 0.94027 1.13241 1.30771 1.30561 1.05500 1.04981 0.93793 1.83825 1.02060 1.60633 1.08962 1.20628 0.97130 0.91961 0.96358 1.21008 1.00058 0.97063 1.02215 0.89856 0.87956 0.87824 0.88805 0.88036 0.76736 0.88188 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.77 10.96 55.56 0.61 -17.16 16 2 C 0.07 1.64 5.13 -17.31 -0.09 1.55 16 3 Si 0.92 16.68 29.60 -169.99 -5.03 11.65 16 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.43 -10.39 9.04 -37.75 -0.34 -10.73 16 8 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.28 5.57 -106.80 -0.60 2.69 16 10 C -0.24 -5.58 9.73 -39.27 -0.38 -5.96 16 11 C -0.02 -0.35 9.52 -39.59 -0.38 -0.72 16 12 C -0.28 -6.35 5.89 -104.75 -0.62 -6.97 16 13 C 0.52 11.09 7.89 34.51 0.27 11.36 16 14 O -0.55 -12.20 16.11 -19.27 -0.31 -12.51 16 15 O -0.35 -6.67 9.43 -40.70 -0.38 -7.05 16 16 C 0.15 2.19 6.07 36.00 0.22 2.41 16 17 C -0.01 -0.19 7.17 -13.30 -0.10 -0.29 16 18 N -0.24 -3.78 11.66 32.58 0.38 -3.40 16 19 N -0.26 -3.61 11.66 29.45 0.34 -3.27 16 20 C -0.05 -0.48 12.39 51.74 0.64 0.16 16 21 S 0.20 1.98 23.06 -107.50 -2.48 -0.50 16 22 C -0.04 -0.97 9.55 -39.60 -0.38 -1.34 16 23 C -0.18 -4.52 8.64 -39.27 -0.34 -4.86 16 24 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 25 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 26 H 0.10 2.22 7.63 -52.48 -0.40 1.82 16 27 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.22 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.10 2.15 7.59 -52.48 -0.40 1.75 16 31 H 0.12 3.02 6.16 -52.48 -0.32 2.69 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -28.86 300.37 -6.79 -35.65 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -2.36 Total: 4.77 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.08 Total: -12.71 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 1.33 Total: -23.82 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.69 Total: -19.57 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.48 Total: -0.50 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.86 -6.79 -35.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532064257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.673 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds