Wall clock time and date at job start Tue Mar 31 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86793 * 120.00314 * 2 1 4 4 H 1.48499 * 109.47004 * 239.99690 * 3 2 1 5 5 H 1.48504 * 109.47061 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47531 * 119.99009 * 3 2 1 7 7 C 1.40244 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00304 * 197.87061 * 7 2 1 9 9 C 1.41089 * 120.00044 * 17.87202 * 7 2 1 10 10 C 1.40898 * 120.10093 * 204.64391 * 9 7 2 11 11 C 1.36302 * 119.89895 * 180.02562 * 10 9 7 12 12 C 1.40067 * 120.10263 * 0.02562 * 11 10 9 13 13 C 1.47502 * 119.90001 * 179.97438 * 12 11 10 14 14 O 1.21509 * 120.00418 * 359.97438 * 13 12 11 15 15 O 1.34777 * 120.00085 * 179.97438 * 13 12 11 16 16 C 1.45197 * 117.00473 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47419 * 180.02562 * 16 15 13 18 18 N 1.29413 * 125.69723 * 89.97766 * 17 16 15 19 19 N 1.26395 * 116.47288 * 180.02562 * 18 17 16 20 20 C 1.29414 * 116.47973 * 359.97438 * 19 18 17 21 21 S 1.71220 * 108.60560 * 0.23095 * 20 19 18 22 22 C 1.40067 * 120.19440 * 0.25120 * 12 11 10 23 23 C 1.36295 * 120.10567 * 359.48624 * 22 12 11 24 24 H 0.97004 * 119.99502 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.05122 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.94897 * 179.97438 * 11 10 9 27 27 H 1.09005 * 109.47069 * 59.99712 * 16 15 13 28 28 H 1.09004 * 109.47282 * 300.00165 * 16 15 13 29 29 H 1.08000 * 125.69622 * 179.97438 * 20 19 18 30 30 H 1.08006 * 119.94672 * 179.74759 * 22 12 11 31 31 H 1.08006 * 120.05332 * 180.25686 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 3.0942 1.6962 -1.2125 5 1 1.2755 2.7464 -0.0006 6 1 3.0940 1.6964 1.2126 7 6 2.0075 -1.2146 0.0005 8 1 3.0485 -1.2371 0.2876 9 6 1.3531 -2.4071 -0.3739 10 6 1.8266 -3.6495 0.0926 11 6 1.1915 -4.7990 -0.2721 12 6 0.0701 -4.7467 -1.1098 13 6 -0.6133 -5.9935 -1.5022 14 8 -0.2032 -7.0640 -1.0992 15 8 -1.6928 -5.9455 -2.3077 16 6 -2.3145 -7.2114 -2.6532 17 6 -3.4964 -6.9613 -3.5540 18 7 -3.4636 -6.9130 -4.8468 19 7 -4.5625 -6.6907 -5.4304 20 6 -5.5986 -6.5366 -4.6705 21 16 -5.1058 -6.6877 -3.0377 22 6 -0.4005 -3.5144 -1.5807 23 6 0.2250 -2.3594 -1.2168 24 1 -0.4849 0.8401 -0.0004 25 1 2.6914 -3.6908 0.7382 26 1 1.5540 -5.7518 0.0847 27 1 -2.6492 -7.7117 -1.7444 28 1 -1.5913 -7.8423 -3.1700 29 1 -6.6052 -6.3408 -5.0094 30 1 -1.2631 -3.4790 -2.2297 31 1 -0.1412 -1.4093 -1.5770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532064257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:37 Heat of formation + Delta-G solvation = -20.279266 kcal Electronic energy + Delta-G solvation = -19069.789389 eV Core-core repulsion = 15828.726303 eV Total energy + Delta-G solvation = -3241.063086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.051 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.44670 -41.31988 -39.30677 -37.47732 -35.76447 -33.65540 -32.18216 -31.38907 -29.86410 -27.98325 -26.28278 -24.13412 -22.85081 -21.90332 -21.74104 -20.35685 -19.41309 -18.72946 -18.20431 -17.37264 -17.21819 -16.75800 -16.55117 -15.78925 -15.30662 -15.18131 -14.75346 -14.45592 -14.14871 -14.04598 -13.88045 -13.53307 -13.26450 -12.88084 -12.69307 -12.40709 -11.98927 -11.86767 -11.62946 -11.47731 -11.37596 -11.36729 -11.16552 -11.08472 -10.79352 -9.64832 -9.54590 -8.86148 -6.56456 -0.77926 -0.16104 0.20988 0.25860 1.13007 1.25194 1.36650 1.42066 1.52948 1.85550 1.93324 2.14636 2.66534 2.87925 3.60679 3.65575 3.67911 4.01936 4.22280 4.26983 4.36011 4.40760 4.41904 4.91549 4.96912 5.10343 5.19289 5.27442 5.54383 5.78899 5.89004 5.94891 6.13770 6.47776 6.68945 6.80663 6.92350 7.37808 8.08306 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.003409 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.584886 B = 8210.877564 C = 9079.466106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.254 1.254 7 C -0.458 4.458 8 H 0.095 0.905 9 C 0.106 3.894 10 C -0.249 4.249 11 C -0.019 4.019 12 C -0.292 4.292 13 C 0.526 3.474 14 O -0.560 6.560 15 O -0.360 6.360 16 C 0.146 3.854 17 C -0.050 4.050 18 N -0.276 5.276 19 N -0.299 5.299 20 C -0.034 4.034 21 S 0.277 5.723 22 C -0.040 4.040 23 C -0.203 4.203 24 H 0.300 0.700 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.262 0.738 30 H 0.111 0.889 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.306 -5.250 -2.762 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.178 1.178 7 C -0.484 4.484 8 H 0.113 0.887 9 C 0.102 3.898 10 C -0.268 4.268 11 C -0.038 4.038 12 C -0.294 4.294 13 C 0.379 3.621 14 O -0.455 6.455 15 O -0.277 6.277 16 C 0.068 3.932 17 C -0.328 4.328 18 N -0.118 5.118 19 N -0.136 5.136 20 C -0.331 4.331 21 S 0.519 5.481 22 C -0.059 4.059 23 C -0.222 4.222 24 H 0.111 0.889 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.277 0.723 30 H 0.129 0.871 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.312 -5.430 -2.975 12.896 hybrid contribution 0.301 0.431 -0.189 0.559 sum -11.011 -4.999 -3.165 12.500 Atomic orbital electron populations 1.69759 1.09455 1.32101 1.29866 1.27034 0.95543 1.05142 0.90716 0.85107 0.78844 0.74607 0.80487 1.18238 1.18833 1.17819 1.20262 0.99047 0.91996 1.37105 0.88730 1.18187 0.90838 0.93263 0.87471 1.20880 1.05325 0.92236 1.08405 1.20516 0.92319 0.97832 0.93095 1.18390 1.05024 0.89744 1.16252 1.21256 0.76951 0.89624 0.74305 1.90697 1.66366 1.32159 1.56251 1.86593 1.42923 1.35096 1.63047 1.21114 0.90328 0.84487 0.97257 1.28750 1.02026 1.07072 0.94985 1.71435 1.19937 1.13885 1.06541 1.71449 0.94688 1.15646 1.31856 1.31326 1.06355 1.01592 0.93848 1.83553 0.98178 1.58563 1.07791 1.20731 0.97226 0.91753 0.96169 1.21002 1.00897 0.97119 1.03223 0.88860 0.86616 0.86632 0.86599 0.88470 0.72271 0.87063 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.87 10.96 21.87 0.24 -36.63 16 2 C 0.04 1.62 5.13 85.36 0.44 2.06 16 3 Si 0.99 33.37 29.60 68.60 2.03 35.40 16 4 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 5 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 6 H -0.25 -8.26 7.11 99.48 0.71 -7.56 16 7 C -0.46 -22.20 9.04 23.46 0.21 -21.99 16 8 H 0.09 4.30 7.91 -2.91 -0.02 4.27 16 9 C 0.11 5.36 5.57 -21.28 -0.12 5.24 16 10 C -0.25 -11.78 9.73 22.47 0.22 -11.56 16 11 C -0.02 -0.88 9.52 22.26 0.21 -0.66 16 12 C -0.29 -13.51 5.89 -19.95 -0.12 -13.63 16 13 C 0.53 22.41 7.89 70.26 0.55 22.96 16 14 O -0.56 -24.68 16.11 19.81 0.32 -24.36 16 15 O -0.36 -13.44 9.43 -56.88 -0.54 -13.97 16 16 C 0.15 4.22 6.07 71.23 0.43 4.65 16 17 C -0.05 -1.33 7.17 88.46 0.63 -0.69 16 18 N -0.28 -8.59 11.66 -50.85 -0.59 -9.18 16 19 N -0.30 -8.01 11.66 -60.75 -0.71 -8.72 16 20 C -0.03 -0.56 12.39 130.60 1.62 1.06 16 21 S 0.28 4.64 23.06 -56.49 -1.30 3.34 16 22 C -0.04 -1.88 9.55 22.26 0.21 -1.66 16 23 C -0.20 -10.20 8.64 22.47 0.19 -10.00 16 24 H 0.30 12.44 8.29 -92.71 -0.77 11.67 16 25 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 26 H 0.12 4.94 7.63 -2.91 -0.02 4.91 16 27 H 0.12 2.78 8.14 -2.38 -0.02 2.76 16 28 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 29 H 0.26 1.45 8.06 -2.91 -0.02 1.43 16 30 H 0.11 4.83 7.59 -2.91 -0.02 4.80 16 31 H 0.11 5.73 6.16 -2.91 -0.02 5.72 16 Total: -1.00 -63.28 300.37 5.12 -58.16 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 1.18 Total: 20.19 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 4.49 Total: -24.22 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -1.06 Total: -54.53 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.22 Total: -38.33 kcal Atomic # 14 Polarization: 33.37 SS G_CDS: 2.03 Total: 35.40 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -1.30 Total: 3.34 kcal Total: -63.28 5.12 -58.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532064257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.877 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds