Wall clock time and date at job start Tue Mar 31 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31328 * 1 3 3 Si 1.86792 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47500 * 240.00348 * 3 2 1 5 5 H 1.48500 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47096 * 120.00156 * 3 2 1 7 7 C 1.39116 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99822 * 175.79466 * 7 2 1 9 9 N 1.36739 * 120.00060 * 355.80382 * 7 2 1 10 10 C 1.46494 * 120.00406 * 46.84831 * 9 7 2 11 11 C 1.50691 * 109.47212 * 85.47806 * 10 9 7 12 12 O 1.20825 * 120.00331 * 359.97438 * 11 10 9 13 13 O 1.34233 * 120.00538 * 180.02562 * 11 10 9 14 14 C 1.34778 * 119.99437 * 226.85390 * 9 7 2 15 15 O 1.21694 * 119.99553 * 185.08714 * 14 9 7 16 16 C 1.46974 * 120.00354 * 5.08891 * 14 9 7 17 17 C 1.35918 * 125.14609 * 185.44178 * 16 14 9 18 18 C 1.46364 * 106.13722 * 179.85947 * 17 16 14 19 19 N 1.32960 * 133.87532 * 180.12075 * 18 17 16 20 20 C 1.31456 * 121.37886 * 180.29370 * 19 18 17 21 21 C 1.38850 * 121.17947 * 0.02562 * 20 19 18 22 22 C 1.38243 * 119.71757 * 359.97438 * 21 20 19 23 23 C 1.39266 * 118.34079 * 0.02562 * 22 21 20 24 24 O 1.34604 * 133.40528 * 180.02562 * 23 22 21 25 25 H 0.96997 * 119.99606 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47497 * 205.47711 * 10 9 7 27 27 H 1.09004 * 109.47032 * 325.47604 * 10 9 7 28 28 H 0.96697 * 117.00359 * 179.97438 * 13 11 10 29 29 H 1.08003 * 126.93004 * 359.97438 * 17 16 14 30 30 H 1.07992 * 119.40627 * 179.97438 * 20 19 18 31 31 H 1.07998 * 120.13699 * 179.97438 * 21 20 19 32 32 H 1.07998 * 120.82445 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6176 0.0000 4 1 3.1010 1.6964 -1.2125 5 1 1.2823 2.7464 0.0006 6 1 3.1011 1.6963 1.2125 7 6 2.0088 -1.2048 -0.0005 8 1 3.0866 -1.2060 -0.0691 9 7 1.3278 -2.3874 0.0856 10 6 0.1540 -2.6200 -0.7594 11 6 0.5963 -3.1505 -2.0987 12 8 1.7715 -3.3168 -2.3245 13 8 -0.3153 -3.4375 -3.0414 14 6 1.7366 -3.3391 0.9480 15 8 1.1886 -4.4256 0.9597 16 6 2.8442 -3.0646 1.8744 17 6 3.4086 -3.9753 2.7108 18 6 4.4644 -3.2644 3.4334 19 7 5.3448 -3.6206 4.3639 20 6 6.2029 -2.7573 4.8605 21 6 6.2234 -1.4367 4.4322 22 6 5.3285 -1.0155 3.4663 23 6 4.4265 -1.9432 2.9512 24 8 3.4502 -1.8695 2.0276 25 1 -0.4849 0.8401 0.0004 26 1 -0.5012 -3.3468 -0.2791 27 1 -0.3843 -1.6826 -0.8996 28 1 0.0165 -3.7748 -3.8847 29 1 3.1345 -5.0144 2.8189 30 1 6.9038 -3.0810 5.6156 31 1 6.9354 -0.7415 4.8520 32 1 5.3285 0.0076 3.1205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069899.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:06 Heat of formation + Delta-G solvation = -69.838865 kcal Electronic energy + Delta-G solvation = -22851.880355 eV Core-core repulsion = 19165.915332 eV Total energy + Delta-G solvation = -3685.965023 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.078 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.14836 -39.69531 -38.76189 -38.06905 -35.57714 -34.98578 -32.83067 -31.90166 -31.07259 -29.87132 -28.07241 -25.29791 -24.10537 -22.97636 -21.70184 -20.75883 -19.82466 -18.48154 -17.43796 -17.37580 -16.68896 -16.19778 -15.82782 -15.61757 -15.32520 -14.85625 -14.78119 -14.41479 -13.69480 -13.62830 -13.17699 -12.94644 -12.76682 -12.47081 -12.34291 -12.32575 -11.74355 -11.42453 -11.36615 -10.98512 -10.68163 -10.59118 -10.26517 -9.85863 -9.52936 -9.27722 -9.15507 -8.67561 -8.26575 -7.89421 -6.65949 -4.50825 0.84728 1.38245 2.22261 2.95770 3.03192 3.05052 3.07136 3.09847 3.50533 3.83120 3.96548 4.06055 4.14687 4.64699 4.75505 4.82612 4.95537 5.13074 5.32483 5.54174 5.75119 5.95659 6.06203 6.08351 6.16046 6.24070 6.54897 6.61468 6.74465 7.13050 7.26411 7.37019 7.45670 8.05549 8.07823 8.63345 8.72090 8.94211 9.39020 10.32717 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.006417 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.197251 B = 4362.228809 C = 5633.561913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.051 3.949 3 Si 0.930 3.070 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.323 4.323 8 H 0.099 0.901 9 N -0.402 5.402 10 C 0.105 3.895 11 C 0.464 3.536 12 O -0.515 6.515 13 O -0.526 6.526 14 C 0.546 3.454 15 O -0.570 6.570 16 C 0.065 3.935 17 C -0.160 4.160 18 C 0.069 3.931 19 N -0.449 5.449 20 C 0.091 3.909 21 C -0.160 4.160 22 C -0.059 4.059 23 C 0.000 4.000 24 O -0.136 6.136 25 H 0.280 0.720 26 H 0.103 0.897 27 H 0.169 0.831 28 H 0.395 0.605 29 H 0.169 0.831 30 H 0.160 0.840 31 H 0.143 0.857 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 1.403 3.428 6.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.155 4.155 3 Si 0.755 3.245 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.451 4.451 8 H 0.117 0.883 9 N -0.119 5.119 10 C -0.019 4.019 11 C 0.306 3.694 12 O -0.402 6.402 13 O -0.337 6.337 14 C 0.335 3.665 15 O -0.456 6.456 16 C 0.012 3.988 17 C -0.182 4.182 18 C -0.060 4.060 19 N -0.158 5.158 20 C -0.075 4.075 21 C -0.180 4.180 22 C -0.085 4.085 23 C -0.052 4.052 24 O -0.033 6.033 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.186 0.814 28 H 0.253 0.747 29 H 0.187 0.813 30 H 0.177 0.823 31 H 0.161 0.839 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.027 0.511 3.806 6.326 hybrid contribution 0.763 1.432 -0.887 1.849 sum 5.790 1.943 2.919 6.769 Atomic orbital electron populations 1.69301 1.06340 1.28812 1.45965 1.25658 0.95506 1.00418 0.93948 0.85931 0.79293 0.79710 0.79602 1.19396 1.20439 1.19080 1.19576 0.92344 0.81522 1.51623 0.88309 1.42917 1.25501 1.14222 1.29240 1.21565 0.90598 1.05919 0.83829 1.24837 0.84162 0.73252 0.87189 1.90637 1.19534 1.49502 1.80575 1.84595 1.43689 1.78407 1.26977 1.17171 0.82682 0.85551 0.81117 1.90753 1.57670 1.24337 1.72812 1.22319 0.95497 0.82565 0.98465 1.22272 0.96702 1.00881 0.98366 1.20689 0.97136 0.91466 0.96705 1.67000 1.03118 1.37235 1.08480 1.22675 0.96484 0.89524 0.98793 1.21902 1.00006 0.97888 0.98235 1.20467 0.92927 0.99007 0.96144 1.20888 0.93309 0.96773 0.94223 1.84705 1.38881 1.32200 1.47530 0.90891 0.87899 0.81424 0.74746 0.81327 0.82327 0.83893 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.87 10.77 55.50 0.60 -20.28 16 2 C 0.05 1.22 5.41 -17.44 -0.09 1.13 16 3 Si 0.93 18.77 29.56 -169.99 -5.02 13.74 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.32 -8.06 7.27 -15.04 -0.11 -8.17 16 8 H 0.10 2.50 6.79 -52.49 -0.36 2.15 16 9 N -0.40 -9.99 2.03 -117.49 -0.24 -10.23 16 10 C 0.11 2.40 5.67 -5.20 -0.03 2.37 16 11 C 0.46 10.07 8.37 36.00 0.30 10.37 16 12 O -0.52 -12.68 17.11 -18.75 -0.32 -13.01 16 13 O -0.53 -8.99 13.42 -39.27 -0.53 -9.51 16 14 C 0.55 13.51 7.60 -12.72 -0.10 13.42 16 15 O -0.57 -14.65 16.39 5.19 0.09 -14.56 16 16 C 0.06 1.46 6.76 -36.88 -0.25 1.21 16 17 C -0.16 -3.27 10.82 -37.15 -0.40 -3.67 16 18 C 0.07 1.34 7.52 -83.18 -0.63 0.71 16 19 N -0.45 -7.77 10.41 -9.87 -0.10 -7.88 16 20 C 0.09 1.20 11.17 -17.49 -0.20 1.01 16 21 C -0.16 -1.92 10.09 -39.35 -0.40 -2.32 16 22 C -0.06 -0.88 10.19 -39.20 -0.40 -1.28 16 23 C 0.00 -0.01 7.42 -38.27 -0.28 -0.29 16 24 O -0.14 -2.97 7.77 3.31 0.03 -2.94 16 25 H 0.28 6.33 8.31 -40.82 -0.34 5.99 16 26 H 0.10 2.24 7.36 -51.93 -0.38 1.86 16 27 H 0.17 3.91 5.20 -51.93 -0.27 3.64 16 28 H 0.40 4.80 9.10 45.56 0.41 5.22 16 29 H 0.17 3.18 8.06 -52.48 -0.42 2.76 16 30 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 296.06 15.07 4.46 4.46 Total: -1.00 -30.93 296.06 -5.04 -35.97 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -1.42 Total: 9.73 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -2.58 Total: 14.49 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.26 Total: -38.38 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.74 Total: -40.02 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.93 -5.04 -35.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069899.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.868 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds