Wall clock time and date at job start Tue Mar 31 2020 06:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31328 * 1 3 3 Si 1.86792 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47500 * 240.00348 * 3 2 1 5 5 H 1.48500 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47096 * 120.00156 * 3 2 1 7 7 C 1.39116 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99822 * 175.79466 * 7 2 1 9 9 N 1.36739 * 120.00060 * 355.80382 * 7 2 1 10 10 C 1.46494 * 120.00406 * 46.84831 * 9 7 2 11 11 C 1.50691 * 109.47212 * 85.47806 * 10 9 7 12 12 O 1.20825 * 120.00331 * 359.97438 * 11 10 9 13 13 O 1.34233 * 120.00538 * 180.02562 * 11 10 9 14 14 C 1.34778 * 119.99437 * 226.85390 * 9 7 2 15 15 O 1.21694 * 119.99553 * 185.08714 * 14 9 7 16 16 C 1.46974 * 120.00354 * 5.08891 * 14 9 7 17 17 C 1.35918 * 125.14609 * 185.44178 * 16 14 9 18 18 C 1.46364 * 106.13722 * 179.85947 * 17 16 14 19 19 N 1.32960 * 133.87532 * 180.12075 * 18 17 16 20 20 C 1.31456 * 121.37886 * 180.29370 * 19 18 17 21 21 C 1.38850 * 121.17947 * 0.02562 * 20 19 18 22 22 C 1.38243 * 119.71757 * 359.97438 * 21 20 19 23 23 C 1.39266 * 118.34079 * 0.02562 * 22 21 20 24 24 O 1.34604 * 133.40528 * 180.02562 * 23 22 21 25 25 H 0.96997 * 119.99606 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47497 * 205.47711 * 10 9 7 27 27 H 1.09004 * 109.47032 * 325.47604 * 10 9 7 28 28 H 0.96697 * 117.00359 * 179.97438 * 13 11 10 29 29 H 1.08003 * 126.93004 * 359.97438 * 17 16 14 30 30 H 1.07992 * 119.40627 * 179.97438 * 20 19 18 31 31 H 1.07998 * 120.13699 * 179.97438 * 21 20 19 32 32 H 1.07998 * 120.82445 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6176 0.0000 4 1 3.1010 1.6964 -1.2125 5 1 1.2823 2.7464 0.0006 6 1 3.1011 1.6963 1.2125 7 6 2.0088 -1.2048 -0.0005 8 1 3.0866 -1.2060 -0.0691 9 7 1.3278 -2.3874 0.0856 10 6 0.1540 -2.6200 -0.7594 11 6 0.5963 -3.1505 -2.0987 12 8 1.7715 -3.3168 -2.3245 13 8 -0.3153 -3.4375 -3.0414 14 6 1.7366 -3.3391 0.9480 15 8 1.1886 -4.4256 0.9597 16 6 2.8442 -3.0646 1.8744 17 6 3.4086 -3.9753 2.7108 18 6 4.4644 -3.2644 3.4334 19 7 5.3448 -3.6206 4.3639 20 6 6.2029 -2.7573 4.8605 21 6 6.2234 -1.4367 4.4322 22 6 5.3285 -1.0155 3.4663 23 6 4.4265 -1.9432 2.9512 24 8 3.4502 -1.8695 2.0276 25 1 -0.4849 0.8401 0.0004 26 1 -0.5012 -3.3468 -0.2791 27 1 -0.3843 -1.6826 -0.8996 28 1 0.0165 -3.7748 -3.8847 29 1 3.1345 -5.0144 2.8189 30 1 6.9038 -3.0810 5.6156 31 1 6.9354 -0.7415 4.8520 32 1 5.3285 0.0076 3.1205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069899.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:05 Heat of formation + Delta-G solvation = -91.486611 kcal Electronic energy + Delta-G solvation = -22852.819072 eV Core-core repulsion = 19165.915332 eV Total energy + Delta-G solvation = -3686.903739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.59515 -41.43146 -40.29872 -39.58266 -37.29797 -36.75543 -34.14206 -33.73360 -32.44142 -31.35095 -29.72985 -27.09591 -25.57164 -24.26045 -23.20551 -22.32969 -21.55605 -20.14928 -19.12331 -18.84852 -18.26274 -17.55093 -17.30214 -17.24344 -16.93996 -16.59172 -16.52158 -15.98857 -15.36794 -15.01890 -14.66434 -14.29652 -14.07182 -14.03625 -13.95701 -13.51529 -13.48767 -13.21017 -13.06468 -12.64266 -12.42061 -12.15429 -11.66530 -11.54893 -11.37734 -10.99360 -10.46778 -10.03748 -9.86904 -9.54587 -8.45848 -6.38298 -0.51485 0.17299 0.73884 1.29320 1.41599 1.42776 1.49518 1.56589 1.88095 2.14813 2.37781 2.58010 2.75570 3.02343 3.17040 3.45227 3.82147 3.94211 4.03847 4.28620 4.37997 4.42348 4.53149 4.59227 4.84765 4.91509 5.04308 5.11737 5.38331 5.46963 5.59221 5.64181 5.95560 6.23277 6.85765 6.86879 7.03445 7.12382 7.54748 8.53557 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.006417 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.197251 B = 4362.228809 C = 5633.561913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.017 3.983 3 Si 0.986 3.014 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.341 4.341 8 H 0.087 0.913 9 N -0.412 5.412 10 C 0.100 3.900 11 C 0.472 3.528 12 O -0.549 6.549 13 O -0.508 6.508 14 C 0.534 3.466 15 O -0.597 6.597 16 C 0.026 3.974 17 C -0.150 4.150 18 C 0.041 3.959 19 N -0.473 5.473 20 C 0.099 3.901 21 C -0.126 4.126 22 C -0.069 4.069 23 C -0.025 4.025 24 O -0.154 6.154 25 H 0.285 0.715 26 H 0.105 0.895 27 H 0.165 0.835 28 H 0.422 0.578 29 H 0.173 0.827 30 H 0.208 0.792 31 H 0.201 0.799 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.756 3.137 4.918 9.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.187 4.187 3 Si 0.808 3.192 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.469 4.469 8 H 0.104 0.896 9 N -0.127 5.127 10 C -0.024 4.024 11 C 0.315 3.685 12 O -0.440 6.440 13 O -0.320 6.320 14 C 0.324 3.676 15 O -0.484 6.484 16 C -0.027 4.027 17 C -0.172 4.172 18 C -0.086 4.086 19 N -0.184 5.184 20 C -0.067 4.067 21 C -0.145 4.145 22 C -0.096 4.096 23 C -0.076 4.076 24 O -0.053 6.053 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.182 0.818 28 H 0.283 0.717 29 H 0.190 0.810 30 H 0.224 0.776 31 H 0.218 0.782 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.297 2.235 5.258 9.268 hybrid contribution 0.196 0.874 -1.212 1.507 sum 7.493 3.109 4.046 9.066 Atomic orbital electron populations 1.69364 1.07215 1.29773 1.45925 1.26391 0.96310 1.02873 0.93139 0.85094 0.78371 0.76042 0.79716 1.19374 1.19382 1.18203 1.19576 0.92036 0.82157 1.53089 0.89584 1.43076 1.25759 1.14393 1.29523 1.21562 0.90335 1.05854 0.84643 1.24489 0.83860 0.72610 0.87503 1.90622 1.20932 1.51133 1.81280 1.84508 1.42089 1.77715 1.27729 1.17519 0.83305 0.85351 0.81395 1.90690 1.58925 1.25033 1.73783 1.21912 0.96832 0.83848 1.00083 1.22450 0.96536 1.00740 0.97433 1.20578 0.98186 0.91513 0.98345 1.67043 1.03841 1.38920 1.08569 1.23657 0.95207 0.89690 0.98156 1.22577 0.98485 0.98149 0.95263 1.21020 0.92400 0.99490 0.96652 1.21492 0.93747 0.98056 0.94263 1.84580 1.39982 1.31820 1.48915 0.90382 0.87680 0.81836 0.71746 0.81000 0.77583 0.78245 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.29 10.77 21.69 0.23 -43.06 16 2 C 0.02 0.83 5.41 84.98 0.46 1.29 16 3 Si 0.99 38.11 29.56 68.60 2.03 40.14 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 7 C -0.34 -17.68 7.27 84.14 0.61 -17.07 16 8 H 0.09 4.58 6.79 -2.91 -0.02 4.56 16 9 N -0.41 -21.46 2.03 -643.86 -1.31 -22.76 16 10 C 0.10 4.75 5.67 85.63 0.49 5.24 16 11 C 0.47 20.96 8.37 71.23 0.60 21.56 16 12 O -0.55 -27.83 17.11 21.97 0.38 -27.46 16 13 O -0.51 -17.01 13.42 -51.44 -0.69 -17.70 16 14 C 0.53 28.09 7.60 86.53 0.66 28.75 16 15 O -0.60 -32.50 16.39 -4.33 -0.07 -32.57 16 16 C 0.03 1.24 6.76 24.02 0.16 1.40 16 17 C -0.15 -6.41 10.82 23.85 0.26 -6.15 16 18 C 0.04 1.59 7.52 41.69 0.31 1.91 16 19 N -0.47 -15.48 10.41 -185.15 -1.93 -17.41 16 20 C 0.10 2.15 11.17 84.90 0.95 3.10 16 21 C -0.13 -2.31 10.09 22.42 0.23 -2.09 16 22 C -0.07 -1.85 10.19 22.52 0.23 -1.62 16 23 C -0.02 -0.93 7.42 23.12 0.17 -0.76 16 24 O -0.15 -7.03 7.77 -11.07 -0.09 -7.12 16 25 H 0.29 12.92 8.31 -92.71 -0.77 12.15 16 26 H 0.11 4.82 7.36 -2.39 -0.02 4.80 16 27 H 0.17 7.89 5.20 -2.39 -0.01 7.88 16 28 H 0.42 9.61 9.10 -74.06 -0.67 8.94 16 29 H 0.17 6.91 8.06 -2.91 -0.02 6.89 16 30 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -71.51 296.06 4.21 -67.30 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.53 Total: 25.09 kcal Atomic # 6 Polarization: 30.43 SS G_CDS: 5.12 Total: 35.55 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -3.00 Total: -83.23 kcal Atomic # 8 Polarization: -84.37 SS G_CDS: -0.47 Total: -84.84 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -71.51 4.21 -67.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069899.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.183 kcal (2) G-P(sol) polarization free energy of solvation -71.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds