Wall clock time and date at job start Tue Mar 31 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31534 * 1 3 3 Si 1.86806 * 119.99774 * 2 1 4 4 H 1.48495 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46809 * 299.99965 * 3 2 1 6 6 H 1.48492 * 109.47039 * 59.99854 * 3 2 1 7 7 C 1.38672 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99836 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00376 * 0.02562 * 7 2 1 10 10 C 1.35573 * 116.99886 * 185.06140 * 9 7 2 11 11 C 1.38789 * 120.15835 * 354.40200 * 10 9 7 12 12 C 1.38069 * 120.06892 * 180.30247 * 11 10 9 13 13 C 1.38541 * 120.39133 * 359.69467 * 12 11 10 14 14 C 1.37865 * 120.31506 * 0.02562 * 13 12 11 15 15 C 1.39617 * 119.92193 * 0.02562 * 14 13 12 16 16 C 1.47583 * 120.19726 * 179.97438 * 15 14 13 17 17 N 1.32230 * 126.68299 * 359.97438 * 16 15 14 18 18 C 1.34179 * 105.53704 * 180.02562 * 17 16 15 19 19 C 1.50701 * 126.18114 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.46958 * 90.00243 * 19 18 17 21 21 O 1.20826 * 120.00128 * 0.02562 * 20 19 18 22 22 O 1.34233 * 119.99997 * 180.02562 * 20 19 18 23 23 N 1.30057 * 107.64268 * 0.24578 * 18 17 16 24 24 O 1.21289 * 110.50316 * 359.57647 * 23 18 17 25 25 H 0.97008 * 120.00067 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.96553 * 0.02562 * 11 10 9 27 27 H 1.08001 * 119.79966 * 179.72412 * 12 11 10 28 28 H 1.08000 * 119.83774 * 180.02562 * 13 12 11 29 29 H 1.08004 * 120.04142 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.46778 * 330.00301 * 19 18 17 31 31 H 1.09004 * 109.47097 * 210.00324 * 19 18 17 32 32 H 0.96691 * 117.00095 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7093 1.3465 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0087 -1.2010 0.0005 8 1 3.0888 -1.2010 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0690 -3.5031 0.1076 11 6 3.4554 -3.4402 0.0942 12 6 4.2014 -4.5974 0.1971 13 6 3.5745 -5.8267 0.3207 14 6 2.1984 -5.9072 0.3416 15 6 1.4312 -4.7454 0.2373 16 6 -0.0424 -4.8245 0.2585 17 7 -0.7730 -5.9210 0.3698 18 6 -2.0490 -5.5070 0.3415 19 6 -3.2711 -6.3837 0.4356 20 6 -3.6661 -6.5413 1.8813 21 8 -3.0218 -5.9971 2.7464 22 8 -4.7339 -7.2863 2.2079 23 7 -2.0408 -4.2128 0.2124 24 8 -0.9021 -3.7976 0.1678 25 1 -0.4850 0.8401 0.0004 26 1 3.9512 -2.4855 -0.0014 27 1 5.2799 -4.5439 0.1817 28 1 4.1668 -6.7263 0.4010 29 1 1.7143 -6.8679 0.4376 30 1 -3.0494 -7.3627 0.0107 31 1 -4.0909 -5.9249 -0.1172 32 1 -4.9480 -7.3582 3.1481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611295778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:59 Heat of formation + Delta-G solvation = -19.632353 kcal Electronic energy + Delta-G solvation = -22203.398767 eV Core-core repulsion = 18519.610862 eV Total energy + Delta-G solvation = -3683.787905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.74148 -40.25653 -39.25128 -36.67787 -36.32790 -35.25881 -33.07011 -32.48521 -30.47586 -29.57000 -28.86196 -25.59935 -23.97610 -23.40666 -21.83980 -21.53336 -20.26783 -18.27952 -18.20018 -17.64480 -17.34754 -16.52039 -16.26957 -16.02680 -15.35974 -14.74685 -14.58643 -14.05482 -13.92044 -13.69934 -13.33197 -13.18391 -12.80441 -12.69343 -11.87282 -11.76733 -11.70106 -11.59612 -11.15892 -11.13321 -11.01688 -10.86728 -10.65753 -10.53097 -10.40551 -9.85491 -9.62551 -9.01643 -8.17535 -7.42660 -6.61929 -4.20884 1.20274 2.10955 2.12259 2.18209 2.74998 3.04528 3.05962 3.11888 3.22621 3.55209 3.80948 3.90600 4.39114 4.42786 4.87467 4.99563 5.01340 5.18712 5.21642 5.50718 5.58919 5.72580 5.88545 6.08629 6.23964 6.36244 6.45390 6.53368 6.55466 6.85881 6.99566 7.10751 7.17802 7.53109 7.77281 7.77495 8.79016 8.82765 9.40944 10.52162 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.005105 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.369719 B = 5483.587100 C = 7000.991792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.045 3.955 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.397 4.397 8 H 0.100 0.900 9 O -0.146 6.146 10 C 0.177 3.823 11 C -0.231 4.231 12 C -0.045 4.045 13 C -0.223 4.223 14 C -0.010 4.010 15 C -0.134 4.134 16 C 0.265 3.735 17 N -0.502 5.502 18 C 0.157 3.843 19 C -0.011 4.011 20 C 0.483 3.517 21 O -0.498 6.498 22 O -0.516 6.516 23 N -0.381 5.381 24 O 0.122 5.878 25 H 0.275 0.725 26 H 0.137 0.863 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.385 -10.650 0.285 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.163 4.163 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.472 4.472 8 H 0.117 0.883 9 O -0.045 6.045 10 C 0.117 3.883 11 C -0.250 4.250 12 C -0.064 4.064 13 C -0.242 4.242 14 C -0.030 4.030 15 C -0.138 4.138 16 C 0.053 3.947 17 N -0.238 5.238 18 C -0.116 4.116 19 C -0.050 4.050 20 C 0.323 3.677 21 O -0.384 6.384 22 O -0.329 6.329 23 N -0.087 5.087 24 O 0.059 5.941 25 H 0.085 0.915 26 H 0.154 0.846 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.445 -10.165 0.077 10.455 hybrid contribution 0.462 0.855 0.680 1.186 sum -1.983 -9.310 0.757 9.549 Atomic orbital electron populations 1.70082 1.06032 1.28227 1.42244 1.25419 0.95899 0.99115 0.95902 0.85591 0.79202 0.79865 0.78479 1.18819 1.19907 1.19911 1.21533 0.92127 0.80298 1.53289 0.88287 1.83970 1.34652 1.11622 1.74227 1.19282 0.90524 0.86808 0.91659 1.21098 0.92795 0.99612 1.11500 1.20998 0.98995 0.92179 0.94239 1.20537 0.93668 0.97460 1.12540 1.20711 0.93253 0.95804 0.93247 1.16285 0.82975 0.92881 1.21676 1.26045 0.94800 0.80521 0.93370 1.71953 1.00386 1.27180 1.24320 1.24479 0.93518 0.89613 1.04030 1.19202 0.93282 1.01199 0.91279 1.23022 0.77403 0.75115 0.92181 1.90808 1.51933 1.44474 1.51172 1.84475 1.46665 1.66699 1.35064 1.74586 1.01046 1.12810 1.20301 1.85673 1.09760 1.34294 1.64343 0.91524 0.84594 0.86682 0.86544 0.85466 0.84740 0.85143 0.72878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.60 13.67 55.48 0.76 -22.84 16 2 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 3 Si 0.94 19.41 29.55 -169.99 -5.02 14.39 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.40 -10.40 9.49 30.89 0.29 -10.11 16 8 H 0.10 2.34 5.21 -52.48 -0.27 2.07 16 9 O -0.15 -3.94 8.21 -17.81 -0.15 -4.09 16 10 C 0.18 4.08 6.66 -38.62 -0.26 3.82 16 11 C -0.23 -4.57 9.16 -39.44 -0.36 -4.93 16 12 C -0.05 -0.74 10.03 -39.53 -0.40 -1.13 16 13 C -0.22 -3.54 10.03 -39.61 -0.40 -3.93 16 14 C -0.01 -0.19 9.70 -39.20 -0.38 -0.57 16 15 C -0.13 -2.88 5.89 -104.82 -0.62 -3.50 16 16 C 0.27 6.03 7.96 -13.90 -0.11 5.92 16 17 N -0.50 -10.35 11.26 -10.17 -0.11 -10.46 16 18 C 0.16 3.04 6.69 -156.56 -1.05 1.99 16 19 C -0.01 -0.14 6.44 -29.04 -0.19 -0.33 16 20 C 0.48 6.71 8.32 36.00 0.30 7.01 16 21 O -0.50 -9.34 16.79 -18.75 -0.31 -9.66 16 22 O -0.52 -4.96 13.42 -39.26 -0.53 -5.49 16 23 N -0.38 -8.69 12.15 31.22 0.38 -8.31 16 24 O 0.12 3.06 10.01 -1.90 -0.02 3.04 16 25 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.14 2.62 5.64 -52.49 -0.30 2.32 16 27 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.13 2.06 7.88 -52.48 -0.41 1.65 16 30 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.41 2.28 9.10 45.56 0.41 2.70 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -33.98 300.78 -5.13 -39.10 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -1.39 Total: 4.46 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -3.26 Total: -4.68 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 1.02 Total: -41.61 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -1.01 Total: -16.20 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.98 -5.13 -39.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611295778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.471 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds