Wall clock time and date at job start Tue Mar 31 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31534 * 1 3 3 Si 1.86806 * 119.99774 * 2 1 4 4 H 1.48495 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46809 * 299.99965 * 3 2 1 6 6 H 1.48492 * 109.47039 * 59.99854 * 3 2 1 7 7 C 1.38672 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99836 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00376 * 0.02562 * 7 2 1 10 10 C 1.35573 * 116.99886 * 185.06140 * 9 7 2 11 11 C 1.38789 * 120.15835 * 354.40200 * 10 9 7 12 12 C 1.38069 * 120.06892 * 180.30247 * 11 10 9 13 13 C 1.38541 * 120.39133 * 359.69467 * 12 11 10 14 14 C 1.37865 * 120.31506 * 0.02562 * 13 12 11 15 15 C 1.39617 * 119.92193 * 0.02562 * 14 13 12 16 16 C 1.47583 * 120.19726 * 179.97438 * 15 14 13 17 17 N 1.32230 * 126.68299 * 359.97438 * 16 15 14 18 18 C 1.34179 * 105.53704 * 180.02562 * 17 16 15 19 19 C 1.50701 * 126.18114 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.46958 * 90.00243 * 19 18 17 21 21 O 1.20826 * 120.00128 * 0.02562 * 20 19 18 22 22 O 1.34233 * 119.99997 * 180.02562 * 20 19 18 23 23 N 1.30057 * 107.64268 * 0.24578 * 18 17 16 24 24 O 1.21289 * 110.50316 * 359.57647 * 23 18 17 25 25 H 0.97008 * 120.00067 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.96553 * 0.02562 * 11 10 9 27 27 H 1.08001 * 119.79966 * 179.72412 * 12 11 10 28 28 H 1.08000 * 119.83774 * 180.02562 * 13 12 11 29 29 H 1.08004 * 120.04142 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.46778 * 330.00301 * 19 18 17 31 31 H 1.09004 * 109.47097 * 210.00324 * 19 18 17 32 32 H 0.96691 * 117.00095 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.7093 1.3465 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0087 -1.2010 0.0005 8 1 3.0888 -1.2010 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0690 -3.5031 0.1076 11 6 3.4554 -3.4402 0.0942 12 6 4.2014 -4.5974 0.1971 13 6 3.5745 -5.8267 0.3207 14 6 2.1984 -5.9072 0.3416 15 6 1.4312 -4.7454 0.2373 16 6 -0.0424 -4.8245 0.2585 17 7 -0.7730 -5.9210 0.3698 18 6 -2.0490 -5.5070 0.3415 19 6 -3.2711 -6.3837 0.4356 20 6 -3.6661 -6.5413 1.8813 21 8 -3.0218 -5.9971 2.7464 22 8 -4.7339 -7.2863 2.2079 23 7 -2.0408 -4.2128 0.2124 24 8 -0.9021 -3.7976 0.1678 25 1 -0.4850 0.8401 0.0004 26 1 3.9512 -2.4855 -0.0014 27 1 5.2799 -4.5439 0.1817 28 1 4.1668 -6.7263 0.4010 29 1 1.7143 -6.8679 0.4376 30 1 -3.0494 -7.3627 0.0107 31 1 -4.0909 -5.9249 -0.1172 32 1 -4.9480 -7.3582 3.1481 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611295778.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:59 Heat of formation + Delta-G solvation = -45.835387 kcal Electronic energy + Delta-G solvation = -22204.535016 eV Core-core repulsion = 18519.610862 eV Total energy + Delta-G solvation = -3684.924154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.39493 -41.35847 -40.90066 -38.31376 -37.40495 -36.78370 -34.63057 -34.31110 -31.83196 -31.07218 -30.43594 -27.45446 -25.56898 -24.82519 -23.21547 -23.12586 -21.69294 -19.93812 -19.43385 -19.26627 -18.86716 -18.08066 -17.46241 -17.30567 -16.78305 -16.40125 -16.20228 -15.69477 -15.47289 -15.14996 -14.77632 -14.46477 -14.26006 -13.81759 -13.58765 -13.33176 -13.29699 -12.77273 -12.68038 -12.63290 -12.57489 -12.34541 -12.08145 -12.05759 -11.90466 -11.43824 -11.33377 -10.85973 -9.70215 -9.07709 -8.49125 -6.18440 -0.42593 0.61795 0.65909 1.04491 1.27505 1.36753 1.45809 1.55652 1.88454 2.04222 2.14265 2.54624 2.79857 2.98345 3.11325 3.29504 3.77446 4.08640 4.13540 4.24601 4.27127 4.34806 4.53592 4.57228 4.76940 4.84378 4.93627 5.06639 5.13863 5.48126 5.50108 5.55577 5.66151 5.93002 6.08694 6.85248 6.91858 7.13026 7.64815 8.70704 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.005105 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.369719 B = 5483.587100 C = 7000.991792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.017 4.017 3 Si 1.020 2.980 4 H -0.242 1.242 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.418 4.418 8 H 0.116 0.884 9 O -0.201 6.201 10 C 0.148 3.852 11 C -0.244 4.244 12 C -0.028 4.028 13 C -0.192 4.192 14 C -0.014 4.014 15 C -0.153 4.153 16 C 0.251 3.749 17 N -0.498 5.498 18 C 0.173 3.827 19 C -0.014 4.014 20 C 0.495 3.505 21 O -0.557 6.557 22 O -0.495 6.495 23 N -0.414 5.414 24 O 0.070 5.930 25 H 0.273 0.727 26 H 0.136 0.864 27 H 0.164 0.836 28 H 0.168 0.832 29 H 0.147 0.853 30 H 0.176 0.824 31 H 0.162 0.838 32 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 -13.682 0.269 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.217 4.217 3 Si 0.839 3.161 4 H -0.165 1.165 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.493 4.493 8 H 0.133 0.867 9 O -0.104 6.104 10 C 0.092 3.908 11 C -0.263 4.263 12 C -0.047 4.047 13 C -0.210 4.210 14 C -0.033 4.033 15 C -0.157 4.157 16 C 0.039 3.961 17 N -0.234 5.234 18 C -0.101 4.101 19 C -0.052 4.052 20 C 0.338 3.662 21 O -0.448 6.448 22 O -0.308 6.308 23 N -0.128 5.128 24 O 0.017 5.983 25 H 0.082 0.918 26 H 0.154 0.846 27 H 0.182 0.818 28 H 0.185 0.815 29 H 0.165 0.835 30 H 0.193 0.807 31 H 0.179 0.821 32 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -0.368 -13.252 0.061 13.258 hybrid contribution -0.108 1.273 0.728 1.471 sum -0.475 -11.979 0.789 12.014 Atomic orbital electron populations 1.70258 1.08247 1.28891 1.46482 1.26688 0.96719 1.02967 0.95345 0.84504 0.78714 0.74560 0.78287 1.16498 1.19543 1.19871 1.22060 0.93016 0.80780 1.53486 0.86698 1.83983 1.36055 1.12607 1.77712 1.19908 0.92209 0.86578 0.92067 1.21311 0.91571 1.01394 1.12031 1.21552 1.01249 0.90801 0.91068 1.21186 0.92876 0.99141 1.07808 1.21090 0.94323 0.95175 0.92759 1.16841 0.82941 0.93841 1.22091 1.26585 0.95621 0.80708 0.93224 1.71975 1.00831 1.26260 1.24343 1.25550 0.94967 0.89292 1.00258 1.19630 0.91597 1.02208 0.91774 1.23007 0.77309 0.74176 0.91739 1.90810 1.54133 1.47097 1.52718 1.84424 1.44421 1.64920 1.37061 1.74575 1.00570 1.14710 1.22957 1.85648 1.10838 1.35876 1.65954 0.91812 0.84604 0.81840 0.81488 0.83495 0.80696 0.82065 0.70450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.35 13.67 21.62 0.30 -55.05 16 2 C -0.02 -0.95 5.49 84.84 0.47 -0.48 16 3 Si 1.02 41.50 29.55 68.60 2.03 43.53 16 4 H -0.24 -8.78 7.11 99.48 0.71 -8.08 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.42 -23.20 9.49 67.92 0.64 -22.55 16 8 H 0.12 5.63 5.21 -2.91 -0.02 5.61 16 9 O -0.20 -11.68 8.21 -2.94 -0.02 -11.70 16 10 C 0.15 7.08 6.66 22.89 0.15 7.24 16 11 C -0.24 -9.43 9.16 22.36 0.20 -9.23 16 12 C -0.03 -0.79 10.03 22.30 0.22 -0.57 16 13 C -0.19 -5.08 10.03 22.25 0.22 -4.86 16 14 C -0.01 -0.46 9.70 22.51 0.22 -0.24 16 15 C -0.15 -6.68 5.89 -19.99 -0.12 -6.80 16 16 C 0.25 11.92 7.96 87.22 0.69 12.61 16 17 N -0.50 -20.58 11.26 -302.64 -3.41 -23.99 16 18 C 0.17 6.76 6.69 138.53 0.93 7.68 16 19 C -0.01 -0.34 6.44 29.10 0.19 -0.15 16 20 C 0.50 12.94 8.32 71.23 0.59 13.53 16 21 O -0.56 -20.93 16.79 21.96 0.37 -20.56 16 22 O -0.49 -8.04 13.42 -51.44 -0.69 -8.73 16 23 N -0.41 -19.91 12.15 -58.46 -0.71 -20.62 16 24 O 0.07 3.80 10.01 86.98 0.87 4.67 16 25 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 26 H 0.14 5.17 5.64 -2.91 -0.02 5.16 16 27 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.15 4.29 7.88 -2.91 -0.02 4.26 16 30 H 0.18 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.16 2.95 8.14 -2.38 -0.02 2.93 16 32 H 0.43 3.59 9.10 -74.06 -0.67 2.91 16 Total: -1.00 -83.89 300.78 3.68 -80.21 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.54 Total: 16.07 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 4.42 Total: -3.82 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -3.82 Total: -99.66 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: 0.52 Total: -36.32 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -83.89 3.68 -80.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611295778.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.371 kcal (2) G-P(sol) polarization free energy of solvation -83.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds