Wall clock time and date at job start Tue Mar 31 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47160 * 2 1 4 4 N 1.46902 * 109.47396 * 179.86574 * 3 2 1 5 5 C 1.46903 * 110.99434 * 288.94878 * 4 3 2 6 6 C 1.50702 * 109.46696 * 160.33243 * 5 4 3 7 7 H 1.08000 * 120.00312 * 4.63780 * 6 5 4 8 8 C 1.37876 * 119.99785 * 184.63405 * 6 5 4 9 9 N 1.31515 * 120.00290 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00024 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47222 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47327 * 120.00044 * 10 8 6 13 13 H 1.48497 * 109.47506 * 240.00336 * 10 8 6 14 14 C 1.46893 * 111.00296 * 164.99846 * 4 3 2 15 15 C 1.50701 * 109.47074 * 293.95392 * 14 4 3 16 16 S 1.76169 * 125.96697 * 270.11297 * 15 14 4 17 17 C 1.70965 * 90.35162 * 180.17799 * 16 15 14 18 18 O 1.35549 * 124.93505 * 179.81862 * 17 16 15 19 19 N 1.29537 * 110.13151 * 359.84234 * 17 16 15 20 20 C 1.32100 * 116.92117 * 359.97438 * 19 17 16 21 21 Cl 1.73596 * 122.73554 * 179.97438 * 20 19 17 22 22 H 1.09007 * 109.46945 * 60.00137 * 1 2 3 23 23 H 1.09004 * 109.47066 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47085 * 299.99855 * 1 2 3 25 25 H 1.09002 * 109.47356 * 240.00205 * 2 1 3 26 26 H 1.08996 * 109.47354 * 120.00075 * 2 1 3 27 27 H 1.08996 * 109.47282 * 59.85906 * 3 2 1 28 28 H 1.09008 * 109.47054 * 299.86296 * 3 2 1 29 29 H 1.08998 * 109.47368 * 280.33450 * 5 4 3 30 30 H 1.09000 * 109.47381 * 40.33820 * 5 4 3 31 31 H 0.97003 * 120.00320 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47452 * 173.94885 * 14 4 3 33 33 H 1.09007 * 109.47183 * 53.94906 * 14 4 3 34 34 H 0.96699 * 113.99679 * 269.99773 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0032 5 6 4.0325 0.9982 1.3019 6 6 5.4619 0.5492 1.1403 7 1 5.9582 0.6596 0.1874 8 6 6.1363 -0.0023 2.2089 9 7 5.5320 -0.1371 3.3692 10 14 7.9084 -0.5582 2.0088 11 1 8.3544 -0.2987 0.6162 12 1 8.7729 0.1942 2.9530 13 1 8.0071 -2.0114 2.2979 14 6 4.0362 2.7669 -0.3516 15 6 3.6809 3.0823 -1.7817 16 16 4.6530 2.6952 -3.1990 17 6 3.4786 3.4123 -4.2135 18 8 3.5650 3.4940 -5.5638 19 7 2.4945 3.8668 -3.5044 20 6 2.5736 3.7014 -2.1961 21 17 1.3415 4.2519 -1.1041 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6746 1.9570 0.8887 28 1 1.6786 1.9556 -0.8913 29 1 3.9889 1.8233 2.0128 30 1 3.4306 0.1680 1.6716 31 1 6.0063 -0.5255 4.1209 32 1 5.1202 2.7689 -0.2376 33 1 3.6003 3.5195 0.3055 34 1 4.0018 4.2958 -5.8822 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237150621.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:49 Heat of formation + Delta-G solvation = 3.862645 kcal Electronic energy + Delta-G solvation = -18968.765443 eV Core-core repulsion = 15862.149474 eV Total energy + Delta-G solvation = -3106.615969 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 290.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.08479 -37.94173 -36.88594 -36.34172 -33.15547 -32.57655 -30.37492 -27.17609 -26.40251 -24.72531 -23.33036 -21.77058 -20.59154 -19.95355 -18.80150 -17.78024 -16.55258 -16.07783 -15.44511 -15.01632 -14.75023 -14.31020 -14.18827 -13.80652 -13.31824 -12.68970 -12.61975 -12.33243 -11.95077 -11.86426 -11.54587 -11.37507 -11.25384 -11.01302 -10.96119 -10.73956 -10.55919 -10.40681 -10.14356 -9.77289 -9.63376 -9.37352 -9.20130 -8.63940 -8.45624 -7.37081 -6.06185 -4.07855 0.49752 0.96055 1.26287 2.26102 2.43970 3.28283 3.36407 3.40124 3.66545 4.38968 4.80020 4.93309 5.07892 5.29908 5.43551 5.51283 5.59008 5.85856 5.92248 6.00351 6.19629 6.23996 6.32779 6.39468 6.70564 6.84231 6.89766 7.14401 7.27325 7.35656 7.76228 8.03317 8.10286 8.46178 8.99199 9.56579 11.04229 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.005791 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.043663 B = 4834.329957 C = 5939.955815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.048 3.952 4 N -0.529 5.529 5 C 0.191 3.809 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.128 3.872 15 C -0.167 4.167 16 S 0.207 5.793 17 C 0.206 3.794 18 O -0.435 6.435 19 N -0.482 5.482 20 C 0.111 3.889 21 Cl -0.003 7.003 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.063 0.937 29 H -0.008 1.008 30 H 0.042 0.958 31 H 0.261 0.739 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 7.960 -12.009 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.080 4.080 4 N -0.253 5.253 5 C 0.066 3.934 6 C -0.545 4.545 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.002 4.002 15 C -0.290 4.290 16 S 0.455 5.545 17 C -0.111 4.111 18 O -0.241 6.241 19 N -0.209 5.209 20 C -0.048 4.048 21 Cl 0.025 6.975 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.010 0.990 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -4.043 6.846 -12.646 14.937 hybrid contribution -0.036 1.030 1.053 1.473 sum -4.079 7.875 -11.592 14.596 Atomic orbital electron populations 1.21729 0.96659 1.01011 1.01124 1.21496 0.94083 0.97079 1.03006 1.22307 0.89192 0.96733 0.99770 1.62222 1.05589 1.21881 1.35652 1.19841 0.95848 0.95182 0.82491 1.21177 0.96520 1.40040 0.96770 0.91896 1.24972 0.98366 0.95947 0.95201 1.69959 1.36996 1.45244 1.01489 0.86488 0.84688 0.78379 0.78154 1.19625 1.21143 1.21019 1.20506 1.02306 0.92257 0.85115 1.25877 0.97505 1.03330 1.02310 1.84457 1.20648 1.54239 0.95140 1.23950 0.94414 1.03521 0.89197 1.84902 1.80967 1.45959 1.12268 1.65773 1.27444 1.22668 1.05049 1.19714 0.92845 1.04818 0.87414 1.98385 1.52542 1.88319 1.58287 0.93350 0.93042 0.93158 0.91810 0.91192 0.95666 0.91842 0.99038 0.93988 0.92945 0.88030 0.92807 0.74043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.08 5.99 -26.73 -0.16 -2.24 16 3 C 0.05 0.88 4.12 -3.82 -0.02 0.87 16 4 N -0.53 -10.86 4.38 -237.52 -1.04 -11.90 16 5 C 0.19 4.70 4.59 -4.97 -0.02 4.68 16 6 C -0.51 -13.51 8.61 -34.44 -0.30 -13.80 16 7 H 0.06 1.66 7.66 -52.49 -0.40 1.25 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -25.83 13.29 55.43 0.74 -25.10 16 10 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.13 2.32 5.05 -4.98 -0.03 2.30 16 15 C -0.17 -2.66 5.54 -35.98 -0.20 -2.86 16 16 S 0.21 2.79 23.22 -107.50 -2.50 0.29 16 17 C 0.21 2.75 8.64 51.79 0.45 3.19 16 18 O -0.43 -4.54 13.64 -18.34 -0.25 -4.79 16 19 N -0.48 -7.49 10.59 -13.08 -0.14 -7.63 16 20 C 0.11 1.75 6.34 -19.11 -0.12 1.63 16 21 Cl 0.00 -0.05 25.98 -51.86 -1.35 -1.40 16 22 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.07 1.36 6.48 -51.93 -0.34 1.02 16 27 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16 28 H 0.06 1.11 4.28 -51.92 -0.22 0.89 16 29 H -0.01 -0.21 8.00 -51.93 -0.42 -0.63 16 30 H 0.04 1.11 6.19 -51.93 -0.32 0.79 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.10 1.91 7.32 -51.93 -0.38 1.53 16 33 H 0.05 0.95 7.57 -51.92 -0.39 0.56 16 34 H 0.40 1.89 9.06 45.56 0.41 2.30 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -30.43 311.71 -8.28 -38.71 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -3.30 Total: -2.27 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.12 Total: -6.54 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.44 Total: -44.63 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.25 Total: -4.79 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.50 Total: 0.29 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.35 Total: -1.40 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.43 -8.28 -38.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237150621.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.576 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds