Wall clock time and date at job start Tue Mar 31 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35825 * 117.00243 * 2 1 4 4 C 1.38526 * 120.11391 * 0.02562 * 3 2 1 5 5 C 1.38203 * 120.11683 * 179.97438 * 4 3 2 6 6 C 1.38698 * 120.34362 * 0.02562 * 5 4 3 7 7 F 1.35098 * 119.88636 * 180.27236 * 6 5 4 8 8 C 1.38064 * 120.22638 * 359.97438 * 6 5 4 9 9 C 1.39643 * 119.88365 * 0.02562 * 8 6 5 10 10 C 1.47757 * 120.17052 * 180.02562 * 9 8 6 11 11 C 1.39133 * 120.27011 * 65.00285 * 10 9 8 12 12 C 1.38088 * 120.17245 * 179.97438 * 11 10 9 13 13 C 1.38843 * 120.72422 * 359.97438 * 12 11 10 14 14 C 1.37708 * 120.53645 * 0.02562 * 13 12 11 15 15 F 1.35100 * 120.09966 * 180.02562 * 14 13 12 16 16 C 1.41041 * 119.80235 * 359.72181 * 14 13 12 17 17 C 1.40764 * 120.34833 * 180.28169 * 16 14 13 18 18 H 1.08008 * 119.99643 * 216.64157 * 17 16 14 19 19 C 1.40052 * 120.00251 * 36.64527 * 17 16 14 20 20 N 1.30796 * 119.99933 * 19.70942 * 19 17 16 21 21 Si 1.86797 * 119.99761 * 199.70973 * 19 17 16 22 22 H 1.48502 * 109.46991 * 89.99885 * 21 19 17 23 23 H 1.48505 * 109.47059 * 209.99653 * 21 19 17 24 24 H 1.48504 * 109.47296 * 329.99944 * 21 19 17 25 25 H 1.09001 * 109.47433 * 60.00240 * 1 2 3 26 26 H 1.09003 * 109.47373 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47317 * 299.99824 * 1 2 3 28 28 H 1.08008 * 119.94323 * 0.02562 * 4 3 2 29 29 H 1.07996 * 119.82673 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.06026 * 179.97438 * 8 6 5 31 31 H 1.07997 * 119.91361 * 359.97007 * 11 10 9 32 32 H 1.08000 * 119.63426 * 179.97438 * 12 11 10 33 33 H 1.08005 * 119.73458 * 180.02562 * 13 12 11 34 34 H 0.97005 * 120.00400 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2935 2.3735 0.0005 5 6 1.9209 3.6049 0.0011 6 6 3.3056 3.6858 0.0005 7 9 3.9093 4.8944 0.0066 8 6 4.0690 2.5354 0.0000 9 6 3.4449 1.2862 -0.0005 10 6 4.2558 0.0510 -0.0005 11 6 5.0647 -0.2569 1.0888 12 6 5.8213 -1.4120 1.0868 13 6 5.7870 -2.2807 0.0042 14 6 4.9968 -2.0049 -1.0893 15 9 4.9697 -2.8566 -2.1377 16 6 4.2108 -0.8340 -1.1088 17 6 3.3943 -0.5438 -2.2181 18 1 3.2728 0.4779 -2.5466 19 6 2.7396 -1.5799 -2.8959 20 7 2.5591 -2.7343 -2.3081 21 14 2.1242 -1.3130 -4.6393 22 1 3.1892 -1.6898 -5.6032 23 1 0.9233 -2.1543 -4.8745 24 1 1.7711 0.1173 -4.8261 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2149 2.3181 0.0014 29 1 1.3300 4.5088 0.0019 30 1 5.1470 2.6016 -0.0008 31 1 5.1011 0.4094 1.9380 32 1 6.4465 -1.6423 1.9368 33 1 6.3850 -3.1800 0.0198 34 1 2.1059 -3.4521 -2.7776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239724708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:36 Heat of formation + Delta-G solvation = -92.334636 kcal Electronic energy + Delta-G solvation = -23080.978751 eV Core-core repulsion = 19386.491066 eV Total energy + Delta-G solvation = -3694.487685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.71718 -48.91622 -40.99677 -38.97322 -37.76283 -35.46499 -33.34066 -31.49372 -30.61745 -29.71977 -27.90058 -27.06336 -24.38912 -23.11483 -22.61868 -21.75630 -19.33054 -18.88562 -18.26378 -17.64893 -17.21221 -16.99491 -16.62859 -16.27079 -16.12810 -15.97672 -15.64016 -15.48304 -15.25377 -14.64481 -14.32012 -13.99129 -13.78026 -13.63335 -13.32294 -13.10011 -12.98349 -12.91989 -12.60329 -12.35012 -12.33568 -12.00009 -11.74781 -11.66446 -11.17515 -10.90127 -9.97350 -9.31142 -9.04567 -8.73661 -8.61059 -6.29109 0.19775 0.38984 0.89913 0.96938 1.34676 1.44626 1.46635 2.20705 2.59182 2.71479 2.78988 3.39210 3.53134 3.81265 3.99117 4.16551 4.25240 4.29325 4.38260 4.46944 4.48979 4.59201 4.76707 4.80032 4.87159 5.02149 5.13791 5.22456 5.23436 5.35014 5.46116 5.69369 5.76503 5.89866 5.99433 6.05125 6.31861 6.51935 6.73762 6.90329 7.00430 8.38054 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.007873 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.057275 B = 3555.728901 C = 4483.345373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.308 6.308 3 C 0.131 3.869 4 C -0.187 4.187 5 C -0.115 4.115 6 C 0.041 3.959 7 F -0.148 7.148 8 C -0.121 4.121 9 C -0.024 4.024 10 C -0.145 4.145 11 C -0.089 4.089 12 C -0.208 4.208 13 C -0.139 4.139 14 C -0.004 4.004 15 F -0.159 7.159 16 C 0.088 3.912 17 C -0.465 4.465 18 H 0.068 0.932 19 C 0.051 3.949 20 N -0.800 5.800 21 Si 0.956 3.044 22 H -0.271 1.271 23 H -0.265 1.265 24 H -0.258 1.258 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.137 0.863 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.720 7.531 4.121 9.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.220 6.220 3 C 0.084 3.916 4 C -0.206 4.206 5 C -0.133 4.133 6 C 0.022 3.978 7 F -0.127 7.127 8 C -0.140 4.140 9 C -0.025 4.025 10 C -0.147 4.147 11 C -0.107 4.107 12 C -0.227 4.227 13 C -0.158 4.158 14 C -0.024 4.024 15 F -0.138 7.138 16 C 0.085 3.915 17 C -0.493 4.493 18 H 0.086 0.914 19 C -0.167 4.167 20 N -0.424 5.424 21 Si 0.778 3.222 22 H -0.196 1.196 23 H -0.189 1.189 24 H -0.182 1.182 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.093 0.907 28 H 0.180 0.820 29 H 0.181 0.819 30 H 0.155 0.845 31 H 0.141 0.859 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.751 7.097 4.061 9.457 hybrid contribution -0.211 -0.298 -1.085 1.145 sum -4.962 6.799 2.976 8.928 Atomic orbital electron populations 1.23221 0.77947 1.04304 1.01963 1.86364 1.22000 1.26318 1.87317 1.19439 0.91720 0.85254 0.95198 1.21253 1.01315 0.90454 1.07554 1.21113 0.91977 0.99274 1.00964 1.17467 0.91597 0.79697 1.09030 1.91434 1.84039 1.42533 1.94722 1.21098 1.00649 0.89884 1.02390 1.17903 0.90221 0.92349 1.02060 1.18496 1.03710 0.97476 0.95023 1.20977 0.95832 0.97071 0.96853 1.20475 1.06226 0.96779 0.99173 1.20939 1.00384 1.00675 0.93826 1.18194 1.03397 0.93435 0.87384 1.91266 1.95651 1.69906 1.56988 1.17695 0.91000 0.89882 0.92934 1.19121 1.25020 0.94239 1.10953 0.91395 1.26361 0.94600 0.93818 1.01886 1.69814 1.30297 1.04215 1.38123 0.85588 0.78405 0.79645 0.78581 1.19644 1.18944 1.18176 0.92163 0.88726 0.90682 0.81989 0.81870 0.84471 0.85872 0.84770 0.86457 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.81 113.37 1.11 1.70 16 2 O -0.31 -12.68 9.03 -91.58 -0.83 -13.51 16 3 C 0.13 5.02 6.12 22.80 0.14 5.16 16 4 C -0.19 -5.54 9.03 22.33 0.20 -5.34 16 5 C -0.11 -3.17 10.01 22.37 0.22 -2.95 16 6 C 0.04 1.33 7.29 22.34 0.16 1.49 16 7 F -0.15 -4.60 17.26 44.97 0.78 -3.82 16 8 C -0.12 -4.41 9.72 22.57 0.22 -4.19 16 9 C -0.02 -1.02 4.51 -19.96 -0.09 -1.11 16 10 C -0.15 -6.82 4.99 -19.64 -0.10 -6.91 16 11 C -0.09 -3.74 9.71 22.45 0.22 -3.52 16 12 C -0.21 -8.52 10.02 22.38 0.22 -8.29 16 13 C -0.14 -6.41 9.99 22.29 0.22 -6.19 16 14 C 0.00 -0.21 6.68 22.83 0.15 -0.05 16 15 F -0.16 -8.91 14.26 44.97 0.64 -8.27 16 16 C 0.09 4.66 5.23 -21.07 -0.11 4.55 16 17 C -0.46 -24.70 6.98 23.33 0.16 -24.54 16 18 H 0.07 3.63 7.58 -2.91 -0.02 3.61 16 19 C 0.05 2.61 4.52 85.29 0.39 3.00 16 20 N -0.80 -42.61 11.10 21.85 0.24 -42.36 16 21 Si 0.96 39.51 29.60 68.60 2.03 41.54 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 25 H 0.06 1.56 7.66 -2.39 -0.02 1.55 16 26 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.07 1.67 7.66 -2.39 -0.02 1.65 16 28 H 0.16 3.64 6.29 -2.91 -0.02 3.62 16 29 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 32 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 33 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 34 H 0.28 13.97 8.30 -92.70 -0.77 13.21 16 Total: -1.00 -62.58 303.10 7.13 -55.45 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 1.14 Total: 18.17 kcal Atomic # 6 Polarization: -50.33 SS G_CDS: 3.13 Total: -47.20 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.24 Total: -42.36 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -0.83 Total: -13.51 kcal Atomic # 9 Polarization: -13.51 SS G_CDS: 1.42 Total: -12.09 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -62.58 7.13 -55.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239724708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.885 kcal (2) G-P(sol) polarization free energy of solvation -62.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds