Wall clock time and date at job start Tue Mar 31 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99678 * 2 1 4 4 H 1.48498 * 109.46910 * 269.99594 * 3 2 1 5 5 H 1.48500 * 109.47341 * 30.00046 * 3 2 1 6 6 H 1.48504 * 109.46809 * 150.00379 * 3 2 1 7 7 C 1.37875 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99880 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00163 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47272 * 180.02562 * 9 7 2 11 11 S 1.80999 * 109.47070 * 179.97438 * 10 9 7 12 12 C 1.76202 * 100.00103 * 179.97438 * 11 10 9 13 13 N 1.31446 * 126.37745 * 359.97432 * 12 11 10 14 14 N 1.28511 * 110.07667 * 180.02562 * 13 12 11 15 15 C 1.31274 * 109.95985 * 359.97438 * 14 13 12 16 16 C 1.47843 * 126.46346 * 179.74292 * 15 14 13 17 17 C 1.39569 * 120.14215 * 194.75011 * 16 15 14 18 18 C 1.37960 * 119.85386 * 179.72082 * 17 16 15 19 19 C 1.38358 * 120.13934 * 0.55244 * 18 17 16 20 20 C 1.38353 * 120.29742 * 359.72197 * 19 18 17 21 21 C 1.37966 * 120.14281 * 359.97438 * 20 19 18 22 22 N 1.36560 * 126.38242 * 180.02562 * 12 11 10 23 23 N 1.36595 * 127.17479 * 359.97438 * 22 12 11 24 24 H 0.96997 * 120.00147 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47320 * 59.99680 * 9 7 2 26 26 H 1.09009 * 109.46744 * 299.99976 * 9 7 2 27 27 H 1.08995 * 109.46914 * 59.99612 * 10 9 7 28 28 H 1.08997 * 109.46737 * 299.99758 * 10 9 7 29 29 H 1.08004 * 120.07393 * 359.97438 * 17 16 15 30 30 H 1.07994 * 119.93003 * 180.27635 * 18 17 16 31 31 H 1.08000 * 119.84928 * 179.69940 * 19 18 17 32 32 H 1.07996 * 119.93146 * 180.02562 * 20 19 18 33 33 H 1.07998 * 120.07210 * 180.02562 * 21 20 19 34 34 H 1.00905 * 110.99707 * 269.95890 * 23 22 12 35 35 H 1.00896 * 111.00059 * 33.91047 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 16 5.8315 -2.6365 0.0009 12 6 6.1375 -4.3718 0.0016 13 7 5.2307 -5.3233 0.0024 14 7 5.8002 -6.4754 0.0032 15 6 7.1049 -6.3304 0.0024 16 6 8.1095 -7.4150 0.0082 17 6 9.4421 -7.1344 0.3139 18 6 10.3735 -8.1520 0.3232 19 6 9.9912 -9.4465 0.0192 20 6 8.6730 -9.7305 -0.2903 21 6 7.7304 -8.7231 -0.2971 22 7 7.3609 -4.9785 0.0022 23 7 8.5840 -4.3702 0.0021 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 3.6585 -3.1501 -0.8892 28 1 3.6579 -3.1505 0.8907 29 1 9.7426 -6.1235 0.5466 30 1 11.4041 -7.9370 0.5640 31 1 10.7252 -10.2388 0.0232 32 1 8.3810 -10.7431 -0.5263 33 1 6.7016 -8.9461 -0.5384 34 1 8.9082 -4.2105 -0.9400 35 1 8.5595 -3.5089 0.5270 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003618236.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:17 Heat of formation + Delta-G solvation = 100.820788 kcal Electronic energy + Delta-G solvation = -19201.682849 eV Core-core repulsion = 16133.996901 eV Total energy + Delta-G solvation = -3067.685948 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.09417 -39.87964 -37.66646 -35.83295 -33.66177 -33.35915 -31.86201 -30.92724 -30.30775 -27.66754 -24.85620 -24.54937 -23.07956 -22.70427 -22.03513 -19.84993 -19.17176 -18.63496 -17.89882 -17.74841 -16.72694 -16.46779 -16.26107 -15.77590 -15.62133 -15.25558 -14.82209 -14.66457 -14.32560 -13.84861 -13.83069 -13.19356 -13.14779 -12.90072 -12.34274 -12.29263 -12.20616 -12.04833 -11.97206 -11.79134 -11.66162 -11.56945 -11.32435 -10.81326 -10.73991 -9.88343 -9.75336 -8.76008 -8.32681 -6.40526 -0.31571 -0.20527 0.48363 0.71575 0.88930 1.01786 1.36987 1.39181 1.50406 1.59240 2.33987 2.84602 2.91711 3.01700 3.48072 3.77917 4.07402 4.07878 4.11303 4.17193 4.20861 4.29788 4.52996 4.62798 4.66289 4.72388 4.96355 5.11650 5.17017 5.21087 5.45957 5.50214 5.52303 5.54412 5.59998 6.01778 6.18634 6.21618 6.66233 7.23459 7.28360 8.83833 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.045803 B = 0.002940 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.168854 B = 9519.975322 C =10091.952340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.240 1.240 7 C -0.535 4.535 8 H 0.032 0.968 9 C 0.008 3.992 10 C -0.067 4.067 11 S 0.024 5.976 12 C 0.124 3.876 13 N -0.317 5.317 14 N -0.309 5.309 15 C 0.256 3.744 16 C -0.047 4.047 17 C -0.094 4.094 18 C -0.123 4.123 19 C -0.098 4.098 20 C -0.125 4.125 21 C -0.093 4.093 22 N -0.303 5.303 23 N -0.568 5.568 24 H 0.269 0.731 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.381 0.619 35 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.777 -13.328 -0.606 31.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.163 1.163 7 C -0.575 4.575 8 H 0.051 0.949 9 C -0.031 4.031 10 C -0.216 4.216 11 S 0.253 5.747 12 C -0.252 4.252 13 N -0.162 5.162 14 N -0.150 5.150 15 C -0.011 4.011 16 C -0.050 4.050 17 C -0.114 4.114 18 C -0.141 4.141 19 C -0.117 4.117 20 C -0.143 4.143 21 C -0.114 4.114 22 N -0.084 5.084 23 N -0.202 5.202 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.171 0.829 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.168 0.832 33 H 0.138 0.862 34 H 0.201 0.799 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 28.278 -13.571 -0.243 31.367 hybrid contribution -0.932 1.123 -0.488 1.539 sum 27.346 -12.448 -0.731 30.055 Atomic orbital electron populations 1.70058 1.08444 1.28513 1.51637 1.26016 0.95667 1.03643 0.93621 0.85639 0.79701 0.77727 0.79540 1.18761 1.20819 1.16275 1.21187 0.90848 0.93543 1.51878 0.94936 1.19279 0.94762 0.90728 0.98372 1.23427 0.89703 1.02944 1.05568 1.84845 1.10495 0.87090 1.92289 1.27726 0.85625 1.03063 1.08776 1.74726 1.25813 0.94629 1.21022 1.74329 1.03531 1.16762 1.20342 1.23361 0.92999 0.81780 1.02965 1.17633 0.91163 0.89519 1.06641 1.21794 0.90586 1.02119 0.96863 1.21479 1.00590 0.92363 0.99686 1.21775 0.96282 0.97668 0.95943 1.21386 0.93207 0.99598 1.00127 1.21324 1.00674 0.91434 0.97923 1.45187 1.01874 1.05282 1.56066 1.59941 1.03033 1.34097 1.23162 0.92176 0.94364 0.94520 0.90325 0.90357 0.82888 0.82557 0.82552 0.83196 0.86155 0.79860 0.79231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 2 C 0.01 0.48 5.47 84.65 0.46 0.95 16 3 Si 0.95 42.62 27.47 68.60 1.88 44.50 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 7 C -0.53 -30.77 9.66 25.60 0.25 -30.52 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C 0.01 0.37 4.04 29.85 0.12 0.49 16 10 C -0.07 -2.75 5.17 71.98 0.37 -2.37 16 11 S 0.02 0.72 21.97 -56.49 -1.24 -0.52 16 12 C 0.12 4.09 8.13 179.50 1.46 5.55 16 13 N -0.32 -12.68 11.59 -56.75 -0.66 -13.34 16 14 N -0.31 -11.55 11.96 -50.78 -0.61 -12.15 16 15 C 0.26 7.64 7.80 136.20 1.06 8.71 16 16 C -0.05 -1.08 5.87 -20.09 -0.12 -1.20 16 17 C -0.09 -1.57 9.47 22.53 0.21 -1.36 16 18 C -0.12 -1.44 10.03 22.23 0.22 -1.21 16 19 C -0.10 -1.06 10.04 22.33 0.22 -0.84 16 20 C -0.13 -1.79 10.03 22.23 0.22 -1.57 16 21 C -0.09 -1.97 9.70 22.53 0.22 -1.75 16 22 N -0.30 -7.93 3.83 -186.71 -0.72 -8.64 16 23 N -0.57 -8.59 8.01 37.02 0.30 -8.30 16 24 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 25 H 0.04 1.66 7.20 -2.39 -0.02 1.65 16 26 H 0.04 1.57 7.57 -2.38 -0.02 1.55 16 27 H 0.08 3.40 8.14 -2.40 -0.02 3.38 16 28 H 0.08 3.40 8.14 -2.40 -0.02 3.38 16 29 H 0.15 2.23 5.90 -2.91 -0.02 2.21 16 30 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 31 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.12 2.80 7.94 -2.91 -0.02 2.78 16 34 H 0.38 3.96 9.21 -210.55 -1.94 2.02 16 35 H 0.39 4.73 8.79 -210.56 -1.85 2.88 16 Total: -1.00 -75.41 318.33 1.26 -74.15 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -2.70 Total: 8.33 kcal Atomic # 6 Polarization: -29.84 SS G_CDS: 4.71 Total: -25.13 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -1.38 Total: -101.33 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.50 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -1.24 Total: -0.52 kcal Total: -75.41 1.26 -74.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003618236.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.971 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds