Wall clock time and date at job start Tue Mar 31 2020 07:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38120 * 120.03729 * 2 1 4 4 C 1.38281 * 120.06844 * 180.27276 * 3 2 1 5 5 C 1.38277 * 120.13188 * 359.70301 * 4 3 2 6 6 C 1.38121 * 120.06463 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.03272 * 180.02562 * 6 5 4 8 8 C 1.38829 * 120.03367 * 179.72254 * 2 1 3 9 9 N 1.40225 * 120.06652 * 0.02562 * 8 2 1 10 10 N 1.40603 * 127.44766 * 300.86755 * 9 8 2 11 11 N 1.28872 * 106.87694 * 179.97438 * 10 9 8 12 12 N 1.28399 * 110.53562 * 0.02562 * 11 10 9 13 13 C 1.31577 * 110.54403 * 359.74132 * 12 11 10 14 14 S 1.76199 * 126.53295 * 180.25739 * 13 12 11 15 15 C 1.81004 * 99.99965 * 0.17502 * 14 13 12 16 16 C 1.50695 * 109.46976 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00167 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99772 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99764 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99852 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46956 * 90.00056 * 20 18 16 22 22 H 1.48493 * 109.46943 * 209.99996 * 20 18 16 23 23 H 1.48496 * 109.47307 * 330.00231 * 20 18 16 24 24 H 1.09002 * 109.47654 * 265.05479 * 1 2 3 25 25 H 1.09005 * 109.47097 * 25.05539 * 1 2 3 26 26 H 1.08996 * 109.47348 * 145.05146 * 1 2 3 27 27 H 1.08003 * 119.96403 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.93442 * 179.72655 * 4 3 2 29 29 H 1.07996 * 119.96758 * 180.02562 * 5 4 3 30 30 H 1.08992 * 109.47102 * 275.22228 * 7 6 5 31 31 H 1.08997 * 109.46976 * 35.22597 * 7 6 5 32 32 H 1.09009 * 109.47211 * 155.21870 * 7 6 5 33 33 H 1.09007 * 109.46735 * 299.99987 * 15 14 13 34 34 H 1.09001 * 109.47050 * 59.99682 * 15 14 13 35 35 H 0.97007 * 119.99636 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 -0.0057 5 6 4.2759 0.0009 -0.0052 6 6 3.5901 -1.1980 0.0004 7 6 4.3480 -2.5005 0.0015 8 6 2.2018 -1.2019 0.0058 9 7 1.5028 -2.4175 0.0112 10 7 0.5798 -2.8687 0.9710 11 7 0.1795 -4.0320 0.5873 12 7 0.7515 -4.3649 -0.5130 13 6 1.5674 -3.4142 -0.9152 14 16 2.5576 -3.4290 -2.3726 15 6 2.0967 -5.0432 -3.0493 16 6 2.8430 -5.2796 -4.3370 17 1 3.5263 -4.5313 -4.7103 18 6 2.6532 -6.4513 -5.0387 19 7 3.3048 -6.6578 -6.1622 20 14 1.4706 -7.7453 -4.3933 21 1 0.1127 -7.4905 -4.9379 22 1 1.9299 -9.0918 -4.8188 23 1 1.4289 -7.6822 -2.9103 24 1 -0.3634 -0.0886 1.0238 25 1 -0.3633 0.9310 -0.4352 26 1 -0.3634 -0.8423 -0.5887 27 1 1.6583 2.1310 0.0004 28 1 4.1195 2.1327 -0.0102 29 1 5.3559 0.0046 -0.0092 30 1 4.6082 -2.7703 -1.0219 31 1 5.2583 -2.3906 0.5909 32 1 3.7257 -3.2826 0.4366 33 1 2.3518 -5.8239 -2.3326 34 1 1.0241 -5.0635 -3.2423 35 1 3.1710 -7.4820 -6.6560 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005168304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:43 Heat of formation + Delta-G solvation = 135.749637 kcal Electronic energy + Delta-G solvation = -20355.416117 eV Core-core repulsion = 17289.244798 eV Total energy + Delta-G solvation = -3066.171319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.72335 -39.89185 -34.98293 -33.94805 -33.22621 -31.94446 -31.02847 -29.56142 -27.82530 -26.92172 -24.62855 -23.00116 -22.73654 -21.61496 -21.03870 -18.50981 -17.24736 -16.85398 -16.79308 -15.63020 -15.32580 -14.64543 -14.36202 -14.32967 -13.98194 -13.41283 -13.28070 -13.12223 -13.02012 -12.91725 -12.59973 -12.31794 -12.15622 -11.88071 -11.68343 -11.57279 -11.15160 -10.96143 -10.76126 -10.70732 -10.44685 -10.36002 -9.96356 -9.51500 -8.93693 -8.86841 -8.83262 -7.42673 -6.32511 -4.39442 0.59889 1.03507 1.21443 1.27433 2.26609 2.46662 2.89220 3.21677 3.29741 3.31365 3.36119 4.24232 4.40349 4.46782 4.65802 4.77704 4.97258 5.00540 5.02827 5.12149 5.22221 5.39076 5.46039 5.48097 5.54917 5.57158 5.63122 5.88878 6.08135 6.08739 6.12908 6.22738 6.31813 6.49047 6.52445 6.75872 7.19555 8.07956 8.61818 8.64227 9.22012 10.78074 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021515 B = 0.005040 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.117337 B = 5554.561609 C = 6225.478933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.051 4.051 3 C -0.121 4.121 4 C -0.094 4.094 5 C -0.116 4.116 6 C -0.050 4.050 7 C -0.132 4.132 8 C 0.118 3.882 9 N -0.328 5.328 10 N -0.091 5.091 11 N -0.036 5.036 12 N -0.335 5.335 13 C 0.229 3.771 14 S 0.040 5.960 15 C 0.019 3.981 16 C -0.530 4.530 17 H 0.086 0.914 18 C 0.091 3.909 19 N -0.884 5.884 20 Si 0.873 3.127 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.257 1.257 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 15.410 11.866 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.139 4.139 4 C -0.112 4.112 5 C -0.135 4.135 6 C -0.053 4.053 7 C -0.189 4.189 8 C 0.026 3.974 9 N -0.122 5.122 10 N -0.077 5.077 11 N -0.032 5.032 12 N -0.191 5.191 13 C -0.152 4.152 14 S 0.268 5.732 15 C -0.129 4.129 16 C -0.570 4.570 17 H 0.103 0.897 18 C -0.116 4.116 19 N -0.520 5.520 20 Si 0.698 3.302 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.181 1.181 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.642 15.434 12.206 19.687 hybrid contribution -0.882 -1.127 0.265 1.456 sum -0.240 14.306 12.471 18.980 Atomic orbital electron populations 1.20794 0.90223 1.02956 1.03199 1.19868 0.96764 0.91257 0.97425 1.20926 0.94272 0.96786 1.01941 1.21290 0.94130 0.98339 0.97444 1.20928 1.00365 0.90750 1.01414 1.19979 0.91047 0.97199 0.97031 1.21147 0.99899 0.93039 1.04770 1.17086 0.89722 0.81549 1.08996 1.48635 1.32669 1.14251 1.16667 1.82467 1.05749 1.08291 1.11170 1.77768 1.15405 1.04841 1.05187 1.75061 1.11944 1.23722 1.08347 1.28840 1.00233 0.87231 0.98911 1.86028 1.46790 1.30986 1.09402 1.21911 1.01230 0.89179 1.00599 1.20292 1.27387 1.05558 1.03745 0.89656 1.24751 0.95283 0.97380 0.94193 1.69842 1.40964 1.26470 1.14707 0.86855 0.81544 0.81069 0.80703 1.19561 1.20633 1.18125 0.90101 0.90751 0.91923 0.84881 0.85030 0.84595 0.88005 0.90427 0.92225 0.92426 0.93004 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.24 36.00 0.33 -0.99 16 2 C -0.05 -0.63 5.89 -104.45 -0.62 -1.24 16 3 C -0.12 -1.14 9.68 -39.61 -0.38 -1.52 16 4 C -0.09 -0.80 10.04 -39.55 -0.40 -1.20 16 5 C -0.12 -1.14 9.72 -39.61 -0.38 -1.52 16 6 C -0.05 -0.63 5.70 -104.45 -0.60 -1.23 16 7 C -0.13 -1.69 8.36 36.00 0.30 -1.39 16 8 C 0.12 1.71 5.98 -83.58 -0.50 1.21 16 9 N -0.33 -5.64 2.28 -10.50 -0.02 -5.66 16 10 N -0.09 -1.66 13.28 60.35 0.80 -0.86 16 11 N -0.04 -0.73 13.36 60.35 0.81 0.08 16 12 N -0.33 -7.01 11.57 30.67 0.35 -6.66 16 13 C 0.23 4.38 6.77 -88.38 -0.60 3.78 16 14 S 0.04 0.77 19.14 -107.50 -2.06 -1.29 16 15 C 0.02 0.44 4.06 36.00 0.15 0.59 16 16 C -0.53 -14.02 9.68 -34.44 -0.33 -14.35 16 17 H 0.09 2.40 7.95 -52.49 -0.42 1.98 16 18 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 19 N -0.88 -25.36 13.96 55.43 0.77 -24.59 16 20 Si 0.87 20.56 27.47 -169.99 -4.67 15.89 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 26 H 0.06 0.87 7.57 -51.93 -0.39 0.48 16 27 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 28 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.10 1.36 6.58 -51.93 -0.34 1.02 16 31 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.06 0.90 6.63 -51.92 -0.34 0.55 16 33 H 0.06 1.35 7.20 -51.91 -0.37 0.97 16 34 H 0.05 1.21 7.57 -51.92 -0.39 0.82 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -29.91 312.72 -6.39 -36.30 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -3.96 Total: -2.43 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -3.13 Total: -15.50 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 2.71 Total: -37.68 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.06 Total: -1.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.91 -6.39 -36.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005168304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.046 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds