Wall clock time and date at job start Tue Mar 31 2020 07:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38120 * 120.03729 * 2 1 4 4 C 1.38281 * 120.06844 * 180.27276 * 3 2 1 5 5 C 1.38277 * 120.13188 * 359.70301 * 4 3 2 6 6 C 1.38121 * 120.06463 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.03272 * 180.02562 * 6 5 4 8 8 C 1.38829 * 120.03367 * 179.72254 * 2 1 3 9 9 N 1.40225 * 120.06652 * 0.02562 * 8 2 1 10 10 N 1.40603 * 127.44766 * 300.86755 * 9 8 2 11 11 N 1.28872 * 106.87694 * 179.97438 * 10 9 8 12 12 N 1.28399 * 110.53562 * 0.02562 * 11 10 9 13 13 C 1.31577 * 110.54403 * 359.74132 * 12 11 10 14 14 S 1.76199 * 126.53295 * 180.25739 * 13 12 11 15 15 C 1.81004 * 99.99965 * 0.17502 * 14 13 12 16 16 C 1.50695 * 109.46976 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00167 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99772 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99764 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99852 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.46956 * 90.00056 * 20 18 16 22 22 H 1.48493 * 109.46943 * 209.99996 * 20 18 16 23 23 H 1.48496 * 109.47307 * 330.00231 * 20 18 16 24 24 H 1.09002 * 109.47654 * 265.05479 * 1 2 3 25 25 H 1.09005 * 109.47097 * 25.05539 * 1 2 3 26 26 H 1.08996 * 109.47348 * 145.05146 * 1 2 3 27 27 H 1.08003 * 119.96403 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.93442 * 179.72655 * 4 3 2 29 29 H 1.07996 * 119.96758 * 180.02562 * 5 4 3 30 30 H 1.08992 * 109.47102 * 275.22228 * 7 6 5 31 31 H 1.08997 * 109.46976 * 35.22597 * 7 6 5 32 32 H 1.09009 * 109.47211 * 155.21870 * 7 6 5 33 33 H 1.09007 * 109.46735 * 299.99987 * 15 14 13 34 34 H 1.09001 * 109.47050 * 59.99682 * 15 14 13 35 35 H 0.97007 * 119.99636 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1957 0.0000 4 6 3.5811 1.1965 -0.0057 5 6 4.2759 0.0009 -0.0052 6 6 3.5901 -1.1980 0.0004 7 6 4.3480 -2.5005 0.0015 8 6 2.2018 -1.2019 0.0058 9 7 1.5028 -2.4175 0.0112 10 7 0.5798 -2.8687 0.9710 11 7 0.1795 -4.0320 0.5873 12 7 0.7515 -4.3649 -0.5130 13 6 1.5674 -3.4142 -0.9152 14 16 2.5576 -3.4290 -2.3726 15 6 2.0967 -5.0432 -3.0493 16 6 2.8430 -5.2796 -4.3370 17 1 3.5263 -4.5313 -4.7103 18 6 2.6532 -6.4513 -5.0387 19 7 3.3048 -6.6578 -6.1622 20 14 1.4706 -7.7453 -4.3933 21 1 0.1127 -7.4905 -4.9379 22 1 1.9299 -9.0918 -4.8188 23 1 1.4289 -7.6822 -2.9103 24 1 -0.3634 -0.0886 1.0238 25 1 -0.3633 0.9310 -0.4352 26 1 -0.3634 -0.8423 -0.5887 27 1 1.6583 2.1310 0.0004 28 1 4.1195 2.1327 -0.0102 29 1 5.3559 0.0046 -0.0092 30 1 4.6082 -2.7703 -1.0219 31 1 5.2583 -2.3906 0.5909 32 1 3.7257 -3.2826 0.4366 33 1 2.3518 -5.8239 -2.3326 34 1 1.0241 -5.0635 -3.2423 35 1 3.1710 -7.4820 -6.6560 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005168304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:42 Heat of formation + Delta-G solvation = 118.783130 kcal Electronic energy + Delta-G solvation = -20356.151840 eV Core-core repulsion = 17289.244798 eV Total energy + Delta-G solvation = -3066.907042 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.16865 -40.80521 -36.16207 -35.28168 -34.84730 -33.44454 -32.02300 -31.55032 -28.87799 -27.75345 -25.98500 -24.64819 -24.36678 -22.77480 -21.93469 -19.76173 -19.06150 -18.40462 -18.11039 -16.55063 -16.43024 -16.37870 -15.80276 -15.41823 -15.18856 -14.87761 -14.70010 -14.40282 -14.29723 -14.05586 -13.91361 -13.77559 -13.09960 -12.96385 -12.91079 -12.74739 -12.61931 -12.47338 -12.27915 -12.22713 -12.02917 -11.85342 -11.76088 -11.39043 -10.91544 -9.87743 -9.70390 -8.96741 -8.42592 -6.53492 -0.59096 -0.30510 0.13352 0.22151 0.92546 0.94701 1.17677 1.34286 1.39179 1.48857 2.26914 2.48197 2.91831 3.31866 3.51101 3.63280 3.85519 3.91936 4.03291 4.21418 4.23476 4.28890 4.38755 4.53579 4.58438 4.61863 4.61969 4.67454 4.79988 4.94963 5.11836 5.19308 5.20032 5.30467 5.40878 5.41267 5.88399 5.96770 6.49460 7.11440 7.14484 8.71349 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021515 B = 0.005040 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.117337 B = 5554.561609 C = 6225.478933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.065 4.065 3 C -0.114 4.114 4 C -0.077 4.077 5 C -0.113 4.113 6 C -0.066 4.066 7 C -0.130 4.130 8 C 0.069 3.931 9 N -0.306 5.306 10 N -0.086 5.086 11 N -0.055 5.055 12 N -0.361 5.361 13 C 0.217 3.783 14 S 0.080 5.920 15 C 0.013 3.987 16 C -0.532 4.532 17 H 0.059 0.941 18 C 0.042 3.958 19 N -0.925 5.925 20 Si 0.930 3.070 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.253 1.253 24 H 0.080 0.920 25 H 0.103 0.897 26 H 0.030 0.970 27 H 0.167 0.833 28 H 0.174 0.826 29 H 0.165 0.835 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 18.105 13.058 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.067 4.067 3 C -0.132 4.132 4 C -0.095 4.095 5 C -0.131 4.131 6 C -0.068 4.068 7 C -0.187 4.187 8 C -0.021 4.021 9 N -0.100 5.100 10 N -0.072 5.072 11 N -0.050 5.050 12 N -0.217 5.217 13 C -0.165 4.165 14 S 0.308 5.692 15 C -0.136 4.136 16 C -0.572 4.572 17 H 0.077 0.923 18 C -0.161 4.161 19 N -0.562 5.562 20 Si 0.753 3.247 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.177 1.177 24 H 0.098 0.902 25 H 0.122 0.878 26 H 0.049 0.951 27 H 0.185 0.815 28 H 0.191 0.809 29 H 0.183 0.817 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.174 18.149 13.411 22.597 hybrid contribution -0.942 -1.690 -0.021 1.935 sum 0.233 16.459 13.390 21.219 Atomic orbital electron populations 1.20791 0.90219 1.03096 1.02810 1.20115 0.97069 0.91544 0.97958 1.21366 0.95001 0.96759 1.00058 1.21818 0.93905 0.99468 0.94344 1.21336 1.01873 0.89968 0.99960 1.20143 0.90388 0.98219 0.98096 1.21101 1.00607 0.92615 1.04344 1.17660 0.90677 0.80996 1.12758 1.48713 1.31540 1.14603 1.15177 1.82361 1.05802 1.07735 1.11327 1.77737 1.16292 1.05591 1.05372 1.74962 1.12760 1.24968 1.09049 1.28675 1.00458 0.88004 0.99341 1.85709 1.46647 1.27671 1.09194 1.21660 1.00510 0.92124 0.99278 1.20430 1.26857 1.04951 1.04926 0.92285 1.25525 0.96757 0.99456 0.94322 1.69943 1.42731 1.27466 1.16098 0.85942 0.79651 0.78819 0.80252 1.18904 1.19773 1.17737 0.90180 0.87826 0.95110 0.81545 0.80891 0.81739 0.89005 0.87675 0.95167 0.92849 0.93363 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 9.24 71.23 0.66 -1.79 16 2 C -0.06 -1.46 5.89 -19.75 -0.12 -1.57 16 3 C -0.11 -1.65 9.68 22.25 0.22 -1.44 16 4 C -0.08 -0.92 10.04 22.29 0.22 -0.70 16 5 C -0.11 -1.78 9.72 22.25 0.22 -1.56 16 6 C -0.07 -1.56 5.70 -19.75 -0.11 -1.67 16 7 C -0.13 -3.24 8.36 71.24 0.60 -2.64 16 8 C 0.07 1.95 5.98 38.08 0.23 2.17 16 9 N -0.31 -10.61 2.28 -187.13 -0.43 -11.04 16 10 N -0.09 -3.20 13.28 37.02 0.49 -2.70 16 11 N -0.05 -2.23 13.36 37.02 0.49 -1.74 16 12 N -0.36 -15.46 11.57 -56.89 -0.66 -16.12 16 13 C 0.22 8.45 6.77 179.57 1.22 9.67 16 14 S 0.08 3.12 19.14 -56.49 -1.08 2.04 16 15 C 0.01 0.62 4.06 71.23 0.29 0.91 16 16 C -0.53 -28.80 9.68 25.60 0.25 -28.55 16 17 H 0.06 3.43 7.95 -2.91 -0.02 3.41 16 18 C 0.04 2.33 5.47 84.66 0.46 2.79 16 19 N -0.92 -54.07 13.96 21.45 0.30 -53.77 16 20 Si 0.93 42.77 27.47 68.60 1.88 44.65 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.10 1.57 8.05 -2.38 -0.02 1.55 16 26 H 0.03 0.85 7.57 -2.39 -0.02 0.83 16 27 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 28 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 29 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.09 2.43 6.58 -2.39 -0.02 2.42 16 31 H 0.10 1.93 8.12 -2.39 -0.02 1.91 16 32 H 0.03 0.91 6.63 -2.38 -0.02 0.89 16 33 H 0.05 2.53 7.20 -2.39 -0.02 2.51 16 34 H 0.05 2.28 7.57 -2.39 -0.02 2.26 16 35 H 0.28 14.97 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -67.27 312.72 6.19 -61.08 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: 1.06 Total: 1.97 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 4.12 Total: -24.37 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: 0.20 Total: -85.37 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.08 Total: 2.04 kcal Total: -67.27 6.19 -61.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005168304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.868 kcal (2) G-P(sol) polarization free energy of solvation -67.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds