Wall clock time and date at job start Tue Mar 31 2020 07:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38304 * 119.96936 * 2 1 4 4 C 1.38260 * 120.13555 * 179.97438 * 3 2 1 5 5 C 1.38138 * 120.06411 * 359.76293 * 4 3 2 6 6 C 1.38814 * 119.93430 * 0.53704 * 5 4 3 7 7 N 1.40225 * 120.06669 * 179.72054 * 6 5 4 8 8 N 1.40591 * 127.40405 * 131.61268 * 7 6 5 9 9 N 1.28904 * 106.84719 * 180.26537 * 8 7 6 10 10 N 1.28411 * 110.40776 * 359.78299 * 9 8 7 11 11 C 1.31567 * 110.52006 * 0.02562 * 10 9 8 12 12 S 1.76193 * 126.48576 * 179.97438 * 11 10 9 13 13 C 1.81000 * 99.99845 * 0.02562 * 12 11 10 14 14 C 1.50701 * 109.46814 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00536 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99910 * 179.72292 * 14 13 12 17 17 N 1.31506 * 120.00090 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99761 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47386 * 89.99883 * 18 16 14 20 20 H 1.48506 * 109.47112 * 209.99986 * 18 16 14 21 21 H 1.48507 * 109.47340 * 329.99863 * 18 16 14 22 22 C 1.38108 * 119.97244 * 180.02562 * 2 1 3 23 23 C 1.50696 * 120.02539 * 0.02562 * 22 2 1 24 24 H 1.09007 * 109.47165 * 269.97820 * 1 2 3 25 25 H 1.09004 * 109.47511 * 29.97737 * 1 2 3 26 26 H 1.09003 * 109.47437 * 149.97773 * 1 2 3 27 27 H 1.07997 * 119.93159 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.96819 * 180.02562 * 4 3 2 29 29 H 1.07996 * 120.03585 * 180.25476 * 5 4 3 30 30 H 1.08996 * 109.47056 * 60.00125 * 13 12 11 31 31 H 1.08994 * 109.47124 * 299.99493 * 13 12 11 32 32 H 0.96998 * 119.99947 * 179.97438 * 17 16 14 33 33 H 1.09003 * 109.47087 * 275.49069 * 23 22 2 34 34 H 1.09002 * 109.47384 * 35.49434 * 23 22 2 35 35 H 1.09000 * 109.47265 * 155.49253 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5804 1.2021 0.0005 5 6 4.2759 0.0086 0.0060 6 6 3.5853 -1.1955 -0.0003 7 7 4.2885 -2.4087 -0.0007 8 7 4.0716 -3.5218 0.8303 9 7 4.9421 -4.4122 0.4969 10 7 5.6816 -3.9793 -0.4594 11 6 5.3239 -2.7610 -0.8039 12 16 6.0547 -1.7717 -2.0655 13 6 7.3343 -2.9084 -2.6544 14 6 8.1103 -2.2566 -3.7698 15 1 7.8577 -1.2570 -4.0912 16 6 9.1470 -2.9342 -4.3759 17 7 9.8239 -2.3657 -5.3496 18 14 9.5891 -4.6603 -3.8149 19 1 8.8110 -5.6509 -4.6013 20 1 11.0409 -4.8923 -4.0243 21 1 9.2668 -4.8099 -2.3729 22 6 2.1969 -1.1964 -0.0005 23 6 1.4433 -2.5014 -0.0017 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6562 2.1325 -0.0004 28 1 4.1171 2.1393 0.0010 29 1 5.3558 0.0123 0.0106 30 1 6.8673 -3.8218 -3.0227 31 1 8.0102 -3.1508 -1.8345 32 1 10.5534 -2.8423 -5.7757 33 1 1.1761 -2.7676 1.0210 34 1 0.5373 -2.3973 -0.5987 35 1 2.0716 -3.2834 -0.4283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007685547.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:24 Heat of formation + Delta-G solvation = 136.646917 kcal Electronic energy + Delta-G solvation = -19991.552085 eV Core-core repulsion = 16925.419675 eV Total energy + Delta-G solvation = -3066.132410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 5.92 seconds Orbital eigenvalues (eV) -42.76549 -39.95647 -35.27219 -33.73714 -33.22566 -31.99673 -31.11332 -29.56884 -27.94407 -26.74929 -24.84402 -23.01994 -22.86146 -21.55797 -21.04395 -18.29850 -17.19605 -16.84908 -16.68857 -16.12602 -15.52275 -14.62936 -14.55176 -14.16455 -14.00740 -13.34881 -13.30861 -13.06847 -13.00820 -12.89528 -12.65006 -12.39982 -12.28029 -12.16165 -11.62040 -11.43129 -11.15422 -11.01725 -10.83840 -10.74128 -10.46250 -10.37960 -9.96832 -9.52792 -8.89522 -8.88079 -8.82936 -7.46013 -6.32173 -4.39158 0.51497 1.01980 1.20647 1.36111 2.23086 2.44441 2.88250 3.21964 3.29843 3.33280 3.36403 4.24521 4.37603 4.49125 4.64007 4.74095 4.81070 4.97277 5.00846 5.14475 5.21952 5.24384 5.41667 5.44019 5.49323 5.51102 5.57166 5.69205 5.97375 6.06635 6.14729 6.21618 6.32672 6.49265 6.52464 6.74136 7.19642 8.08317 8.60828 8.62572 9.22209 10.78452 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.004483 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.254994 B = 6244.085446 C = 7029.793701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.103 4.103 4 C -0.102 4.102 5 C -0.102 4.102 6 C 0.131 3.869 7 N -0.329 5.329 8 N -0.092 5.092 9 N -0.035 5.035 10 N -0.334 5.334 11 C 0.228 3.772 12 S 0.037 5.963 13 C 0.021 3.979 14 C -0.531 4.531 15 H 0.086 0.914 16 C 0.090 3.910 17 N -0.884 5.884 18 Si 0.873 3.127 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.257 1.257 22 C -0.061 4.061 23 C -0.115 4.115 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.271 0.729 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.052 7.125 10.473 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.123 4.123 6 C 0.040 3.960 7 N -0.123 5.123 8 N -0.077 5.077 9 N -0.030 5.030 10 N -0.190 5.190 11 C -0.153 4.153 12 S 0.265 5.735 13 C -0.127 4.127 14 C -0.570 4.570 15 H 0.104 0.896 16 C -0.116 4.116 17 N -0.520 5.520 18 Si 0.699 3.301 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.181 1.181 22 C -0.063 4.063 23 C -0.172 4.172 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.237 6.908 10.765 21.464 hybrid contribution 0.706 -1.311 0.213 1.504 sum -16.531 5.597 10.977 20.618 Atomic orbital electron populations 1.20856 0.90376 1.03295 1.02676 1.19638 0.96425 0.91611 1.00238 1.21198 0.94236 0.97675 0.99087 1.21002 0.94078 0.97444 0.99575 1.21178 1.01229 0.90559 0.99358 1.17282 0.90350 0.81531 1.06874 1.48605 1.24763 1.13178 1.25729 1.82475 1.20457 0.90545 1.14263 1.77798 0.99449 1.19726 1.06049 1.75071 1.23987 1.07563 1.12394 1.28724 0.91072 0.96804 0.98694 1.86048 1.38139 1.20068 1.29264 1.21902 0.93927 0.95907 1.00995 1.20298 1.16144 1.03960 1.16621 0.89641 1.24750 0.94796 0.98090 0.93985 1.69836 1.20938 1.38153 1.23060 0.86851 0.78273 0.84343 0.80675 1.19541 1.20625 1.18124 1.19634 0.90985 0.96453 0.99245 1.20852 0.99851 0.93370 1.03106 0.90791 0.91126 0.90921 0.85082 0.84432 0.84330 0.92924 0.92420 0.91861 0.90097 0.90670 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.60 36.00 0.35 -0.43 16 2 C -0.08 -0.76 5.88 -104.65 -0.62 -1.38 16 3 C -0.10 -0.91 9.70 -39.55 -0.38 -1.29 16 4 C -0.10 -1.00 10.04 -39.61 -0.40 -1.40 16 5 C -0.10 -1.31 8.93 -39.41 -0.35 -1.66 16 6 C 0.13 1.91 6.17 -83.58 -0.52 1.39 16 7 N -0.33 -5.72 3.10 -10.63 -0.03 -5.75 16 8 N -0.09 -1.67 12.16 60.35 0.73 -0.94 16 9 N -0.03 -0.70 13.37 60.35 0.81 0.11 16 10 N -0.33 -7.06 11.57 30.56 0.35 -6.70 16 11 C 0.23 4.42 8.00 -88.88 -0.71 3.71 16 12 S 0.04 0.72 20.62 -107.50 -2.22 -1.49 16 13 C 0.02 0.49 4.06 36.01 0.15 0.64 16 14 C -0.53 -14.14 9.68 -34.44 -0.33 -14.47 16 15 H 0.09 2.42 7.95 -52.49 -0.42 2.00 16 16 C 0.09 2.47 5.47 -17.82 -0.10 2.38 16 17 N -0.88 -25.48 13.96 55.43 0.77 -24.71 16 18 Si 0.87 20.64 27.47 -169.99 -4.67 15.97 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.26 -5.99 6.53 56.52 0.37 -5.62 16 22 C -0.06 -0.75 5.89 -104.45 -0.62 -1.36 16 23 C -0.12 -1.32 8.73 36.00 0.31 -1.01 16 24 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 25 H 0.07 0.37 8.09 -51.93 -0.42 -0.04 16 26 H 0.07 0.47 6.03 -51.93 -0.31 0.16 16 27 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 28 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.14 1.81 7.50 -52.49 -0.39 1.41 16 30 H 0.05 1.23 7.58 -51.92 -0.39 0.84 16 31 H 0.06 1.36 7.18 -51.92 -0.37 0.99 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.68 6.18 -51.93 -0.32 0.36 16 35 H 0.06 0.90 6.52 -51.93 -0.34 0.56 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -30.17 312.92 -6.58 -36.75 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -3.83 Total: -3.08 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -3.21 Total: -14.87 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 2.64 Total: -37.99 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.22 Total: -1.49 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.17 -6.58 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007685547.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.393 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.92 seconds