Wall clock time and date at job start Tue Mar 31 2020 07:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38304 * 119.96936 * 2 1 4 4 C 1.38260 * 120.13555 * 179.97438 * 3 2 1 5 5 C 1.38138 * 120.06411 * 359.76293 * 4 3 2 6 6 C 1.38814 * 119.93430 * 0.53704 * 5 4 3 7 7 N 1.40225 * 120.06669 * 179.72054 * 6 5 4 8 8 N 1.40591 * 127.40405 * 131.61268 * 7 6 5 9 9 N 1.28904 * 106.84719 * 180.26537 * 8 7 6 10 10 N 1.28411 * 110.40776 * 359.78299 * 9 8 7 11 11 C 1.31567 * 110.52006 * 0.02562 * 10 9 8 12 12 S 1.76193 * 126.48576 * 179.97438 * 11 10 9 13 13 C 1.81000 * 99.99845 * 0.02562 * 12 11 10 14 14 C 1.50701 * 109.46814 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00536 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99910 * 179.72292 * 14 13 12 17 17 N 1.31506 * 120.00090 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99761 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47386 * 89.99883 * 18 16 14 20 20 H 1.48506 * 109.47112 * 209.99986 * 18 16 14 21 21 H 1.48507 * 109.47340 * 329.99863 * 18 16 14 22 22 C 1.38108 * 119.97244 * 180.02562 * 2 1 3 23 23 C 1.50696 * 120.02539 * 0.02562 * 22 2 1 24 24 H 1.09007 * 109.47165 * 269.97820 * 1 2 3 25 25 H 1.09004 * 109.47511 * 29.97737 * 1 2 3 26 26 H 1.09003 * 109.47437 * 149.97773 * 1 2 3 27 27 H 1.07997 * 119.93159 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.96819 * 180.02562 * 4 3 2 29 29 H 1.07996 * 120.03585 * 180.25476 * 5 4 3 30 30 H 1.08996 * 109.47056 * 60.00125 * 13 12 11 31 31 H 1.08994 * 109.47124 * 299.99493 * 13 12 11 32 32 H 0.96998 * 119.99947 * 179.97438 * 17 16 14 33 33 H 1.09003 * 109.47087 * 275.49069 * 23 22 2 34 34 H 1.09002 * 109.47384 * 35.49434 * 23 22 2 35 35 H 1.09000 * 109.47265 * 155.49253 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5804 1.2021 0.0005 5 6 4.2759 0.0086 0.0060 6 6 3.5853 -1.1955 -0.0003 7 7 4.2885 -2.4087 -0.0007 8 7 4.0716 -3.5218 0.8303 9 7 4.9421 -4.4122 0.4969 10 7 5.6816 -3.9793 -0.4594 11 6 5.3239 -2.7610 -0.8039 12 16 6.0547 -1.7717 -2.0655 13 6 7.3343 -2.9084 -2.6544 14 6 8.1103 -2.2566 -3.7698 15 1 7.8577 -1.2570 -4.0912 16 6 9.1470 -2.9342 -4.3759 17 7 9.8239 -2.3657 -5.3496 18 14 9.5891 -4.6603 -3.8149 19 1 8.8110 -5.6509 -4.6013 20 1 11.0409 -4.8923 -4.0243 21 1 9.2668 -4.8099 -2.3729 22 6 2.1969 -1.1964 -0.0005 23 6 1.4433 -2.5014 -0.0017 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6562 2.1325 -0.0004 28 1 4.1171 2.1393 0.0010 29 1 5.3558 0.0123 0.0106 30 1 6.8673 -3.8218 -3.0227 31 1 8.0102 -3.1508 -1.8345 32 1 10.5534 -2.8423 -5.7757 33 1 1.1761 -2.7676 1.0210 34 1 0.5373 -2.3973 -0.5987 35 1 2.0716 -3.2834 -0.4283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007685547.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:20 Heat of formation + Delta-G solvation = 119.737683 kcal Electronic energy + Delta-G solvation = -19992.285325 eV Core-core repulsion = 16925.419675 eV Total energy + Delta-G solvation = -3066.865650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = -2.31 seconds Orbital eigenvalues (eV) -44.22589 -40.85121 -36.45011 -35.28968 -34.57331 -33.48682 -32.10769 -31.56488 -28.80977 -27.53364 -26.16882 -24.72178 -24.43939 -22.78110 -21.91445 -19.63102 -18.99815 -18.36555 -18.02815 -16.97186 -16.56450 -16.48772 -15.80054 -15.43423 -14.96171 -14.88044 -14.79868 -14.44868 -14.12722 -13.97840 -13.74069 -13.63543 -13.24614 -13.01799 -12.88477 -12.76486 -12.49809 -12.38679 -12.31217 -12.28065 -12.03078 -11.85573 -11.79230 -11.41851 -10.91945 -9.84885 -9.70340 -9.01099 -8.42971 -6.54161 -0.69676 -0.32753 0.19226 0.21857 0.89208 0.90704 1.16088 1.34472 1.39106 1.48992 2.26798 2.46784 2.91401 3.22466 3.56599 3.62425 3.83167 3.97815 4.03618 4.06753 4.17097 4.32968 4.52941 4.55245 4.58585 4.61238 4.73700 4.79445 4.90082 4.96258 5.13514 5.19057 5.23557 5.30751 5.36238 5.50965 5.87230 5.96247 6.48863 7.10500 7.10963 8.71053 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.004483 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.254994 B = 6244.085446 C = 7029.793701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.089 4.089 4 C -0.098 4.098 5 C -0.119 4.119 6 C 0.085 3.915 7 N -0.310 5.310 8 N -0.083 5.083 9 N -0.053 5.053 10 N -0.359 5.359 11 C 0.214 3.786 12 S 0.076 5.924 13 C 0.015 3.985 14 C -0.534 4.534 15 H 0.058 0.942 16 C 0.042 3.958 17 N -0.925 5.925 18 Si 0.932 3.068 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.253 1.253 22 C -0.073 4.073 23 C -0.112 4.112 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.171 0.829 28 H 0.166 0.834 29 H 0.128 0.872 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.276 0.724 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.394 8.505 11.492 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.076 4.076 3 C -0.107 4.107 4 C -0.117 4.117 5 C -0.140 4.140 6 C -0.005 4.005 7 N -0.103 5.103 8 N -0.069 5.069 9 N -0.048 5.048 10 N -0.216 5.216 11 C -0.168 4.168 12 S 0.303 5.697 13 C -0.134 4.134 14 C -0.573 4.573 15 H 0.077 0.923 16 C -0.161 4.161 17 N -0.563 5.563 18 Si 0.755 3.245 19 H -0.188 1.188 20 H -0.198 1.198 21 H -0.177 1.177 22 C -0.075 4.075 23 C -0.169 4.169 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.188 0.812 28 H 0.184 0.816 29 H 0.146 0.854 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -19.600 8.300 11.796 24.335 hybrid contribution 1.223 -1.519 -0.030 1.951 sum -18.376 6.781 11.766 22.850 Atomic orbital electron populations 1.20955 0.87877 1.04469 1.03857 1.20065 0.98159 0.90824 0.98584 1.21702 0.93881 0.98923 0.96232 1.21390 0.94901 0.97263 0.98117 1.21286 1.00988 0.91176 1.00527 1.17795 0.91468 0.80688 1.10582 1.48722 1.23801 1.13633 1.24165 1.82378 1.19790 0.90777 1.13999 1.77769 1.00076 1.20451 1.06529 1.74974 1.24943 1.08519 1.13127 1.28564 0.92257 0.96640 0.99316 1.85734 1.36590 1.18045 1.29291 1.21654 0.95132 0.96712 0.99879 1.20440 1.16495 1.03013 1.17372 0.92347 1.25541 0.94794 1.01811 0.93986 1.69940 1.21880 1.39969 1.24486 0.85922 0.78363 0.79846 0.80409 1.18823 1.19777 1.17686 1.19872 0.90161 0.97866 0.99625 1.20852 1.00154 0.92203 1.03680 0.89447 0.89028 0.90747 0.81169 0.81619 0.85427 0.93162 0.92802 0.91479 0.89518 0.88170 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.60 71.23 0.68 -0.36 16 2 C -0.08 -1.20 5.88 -19.88 -0.12 -1.32 16 3 C -0.09 -1.17 9.70 22.29 0.22 -0.96 16 4 C -0.10 -1.62 10.04 22.25 0.22 -1.40 16 5 C -0.12 -2.90 8.93 22.38 0.20 -2.70 16 6 C 0.08 2.41 6.17 38.08 0.23 2.65 16 7 N -0.31 -10.83 3.10 -187.54 -0.58 -11.42 16 8 N -0.08 -3.07 12.16 37.02 0.45 -2.62 16 9 N -0.05 -2.16 13.37 37.02 0.50 -1.67 16 10 N -0.36 -15.41 11.57 -57.22 -0.66 -16.07 16 11 C 0.21 8.40 8.00 179.74 1.44 9.84 16 12 S 0.08 2.98 20.62 -56.49 -1.16 1.82 16 13 C 0.02 0.71 4.06 71.24 0.29 1.00 16 14 C -0.53 -29.06 9.68 25.60 0.25 -28.81 16 15 H 0.06 3.42 7.95 -2.91 -0.02 3.40 16 16 C 0.04 2.30 5.47 84.66 0.46 2.76 16 17 N -0.92 -54.31 13.96 21.45 0.30 -54.01 16 18 Si 0.93 42.84 27.47 68.60 1.88 44.72 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.25 -11.38 6.53 99.48 0.65 -10.73 16 22 C -0.07 -1.67 5.89 -19.75 -0.12 -1.79 16 23 C -0.11 -2.44 8.73 71.23 0.62 -1.82 16 24 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.09 0.49 8.09 -2.38 -0.02 0.47 16 26 H 0.07 0.68 6.03 -2.39 -0.01 0.66 16 27 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 28 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 29 H 0.13 3.32 7.50 -2.91 -0.02 3.29 16 30 H 0.05 2.37 7.58 -2.40 -0.02 2.36 16 31 H 0.05 2.56 7.18 -2.40 -0.02 2.54 16 32 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 1.59 6.18 -2.39 -0.01 1.58 16 35 H 0.03 0.90 6.52 -2.39 -0.02 0.88 16 Total: -1.00 -67.07 312.92 6.17 -60.90 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: 1.06 Total: 1.24 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 4.38 Total: -22.90 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: 0.00 Total: -85.78 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.16 Total: 1.82 kcal Total: -67.07 6.17 -60.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007685547.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.637 kcal (2) G-P(sol) polarization free energy of solvation -67.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.31 seconds