Wall clock time and date at job start Tue Mar 31 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38301 * 119.93200 * 2 1 4 4 C 1.38097 * 120.06466 * 179.97438 * 3 2 1 5 5 C 1.38844 * 119.93611 * 0.02562 * 4 3 2 6 6 N 1.40219 * 120.06763 * 180.02562 * 5 4 3 7 7 N 1.40598 * 127.40748 * 132.16639 * 6 5 4 8 8 N 1.28894 * 106.85270 * 180.26752 * 7 6 5 9 9 N 1.28411 * 110.40720 * 359.78106 * 8 7 6 10 10 C 1.31568 * 110.51954 * 359.97438 * 9 8 7 11 11 S 1.76192 * 126.48754 * 179.97438 * 10 9 8 12 12 C 1.81000 * 99.99800 * 0.02562 * 11 10 9 13 13 C 1.50701 * 109.47483 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99574 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00287 * 179.72268 * 13 12 11 16 16 N 1.31506 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99721 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47484 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46885 * 120.00772 * 17 15 13 20 20 H 1.48499 * 109.47478 * 239.99968 * 17 15 13 21 21 C 1.38816 * 119.86824 * 0.27723 * 5 4 3 22 22 C 1.50702 * 120.03584 * 179.72350 * 21 5 4 23 23 C 1.38146 * 119.93073 * 359.40816 * 21 5 4 24 24 H 1.08998 * 109.46827 * 90.00530 * 1 2 3 25 25 H 1.08995 * 109.46897 * 209.99927 * 1 2 3 26 26 H 1.08995 * 109.47506 * 330.00271 * 1 2 3 27 27 H 1.08004 * 119.96522 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.02989 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47008 * 60.00231 * 12 11 10 30 30 H 1.09001 * 109.47583 * 300.00064 * 12 11 10 31 31 H 0.97002 * 120.00194 * 179.97438 * 16 15 13 32 32 H 1.09000 * 109.46605 * 84.68181 * 22 21 5 33 33 H 1.09002 * 109.47113 * 204.68303 * 22 21 5 34 34 H 1.08998 * 109.46727 * 324.68730 * 22 21 5 35 35 H 1.07998 * 119.96964 * 180.34064 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5781 1.2017 0.0005 5 6 4.2738 0.0002 0.0005 6 7 5.6759 0.0002 0.0016 7 7 6.5294 -0.7499 0.8297 8 7 7.7365 -0.4417 0.4992 9 7 7.7340 0.4201 -0.4528 10 6 6.5009 0.7224 -0.7979 11 16 6.0128 1.8567 -2.0546 12 6 7.6384 2.3979 -2.6381 13 6 7.4651 3.4016 -3.7488 14 1 6.4738 3.6852 -4.0704 15 6 8.5718 3.9624 -4.3501 16 7 9.7787 3.6212 -3.9549 17 14 8.3567 5.2071 -5.7263 18 1 6.9091 5.4183 -5.9810 19 1 8.9825 6.4946 -5.3315 20 1 9.0078 4.6983 -6.9602 21 6 3.5784 -1.2013 -0.0058 22 6 4.3296 -2.5076 -0.0121 23 6 2.1969 -1.1981 0.0002 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6554 2.1329 -0.0004 28 1 4.1164 2.1380 0.0010 29 1 8.1958 1.5380 -3.0098 30 1 8.1856 2.8573 -1.8149 31 1 10.5574 4.0155 -4.3782 32 1 4.5929 -2.7802 1.0099 33 1 3.7015 -3.2859 -0.4455 34 1 5.2379 -2.4015 -0.6053 35 1 1.6553 -2.1325 0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015235875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:34 Heat of formation + Delta-G solvation = 128.538437 kcal Electronic energy + Delta-G solvation = -19828.981384 eV Core-core repulsion = 16762.497364 eV Total energy + Delta-G solvation = -3066.484021 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.62974 -39.83709 -35.37631 -33.32033 -33.12927 -31.84092 -31.59748 -28.75041 -27.52651 -27.12452 -24.21767 -23.31059 -22.89172 -22.01633 -20.79100 -18.54227 -17.08651 -16.64532 -16.29231 -15.45238 -15.29000 -14.87230 -14.42026 -14.33248 -13.75955 -13.45753 -13.43372 -13.00180 -12.81508 -12.58064 -12.51667 -12.43366 -12.31274 -11.89247 -11.57433 -11.44390 -11.04612 -11.01761 -10.82123 -10.71899 -10.53665 -10.34004 -9.78523 -9.46057 -9.03580 -8.74657 -8.65962 -7.30739 -6.29990 -4.39819 0.57643 1.08710 1.34580 1.44807 2.35477 2.59355 3.11986 3.18616 3.26374 3.31259 3.38133 4.24526 4.43922 4.52708 4.59607 4.78309 4.99221 5.03448 5.06732 5.20586 5.26527 5.32792 5.40402 5.50034 5.56202 5.61627 5.68636 5.69563 5.96896 6.04648 6.23023 6.28339 6.38732 6.80235 6.93676 7.05496 7.55679 7.79211 8.60906 8.75289 9.25005 10.80190 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.004407 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.381689 B = 6352.204682 C = 7510.779896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 C -0.109 4.109 4 C -0.091 4.091 5 C 0.124 3.876 6 N -0.331 5.331 7 N -0.096 5.096 8 N -0.035 5.035 9 N -0.327 5.327 10 C 0.235 3.765 11 S -0.004 6.004 12 C 0.066 3.934 13 C -0.530 4.530 14 H 0.069 0.931 15 C 0.073 3.927 16 N -0.879 5.879 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.055 4.055 22 C -0.113 4.113 23 C -0.112 4.112 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.269 0.731 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.997 -7.192 6.895 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.072 4.072 3 C -0.128 4.128 4 C -0.112 4.112 5 C 0.032 3.968 6 N -0.125 5.125 7 N -0.082 5.082 8 N -0.030 5.030 9 N -0.183 5.183 10 C -0.146 4.146 11 S 0.223 5.777 12 C -0.081 4.081 13 C -0.570 4.570 14 H 0.088 0.912 15 C -0.133 4.133 16 N -0.515 5.515 17 Si 0.735 3.265 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.058 4.058 22 C -0.170 4.170 23 C -0.131 4.131 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.799 -7.564 7.302 20.671 hybrid contribution 0.637 0.641 -0.637 1.106 sum -17.161 -6.923 6.665 19.668 Atomic orbital electron populations 1.20822 0.90554 1.03049 1.02752 1.20065 0.96523 0.92907 0.97689 1.20887 0.92639 0.98242 1.00994 1.21168 0.94814 0.96873 0.98370 1.17279 0.77291 0.94757 1.07486 1.48630 1.06076 1.31742 1.26066 1.82450 0.94871 1.16392 1.14470 1.77811 1.12603 1.06453 1.06168 1.75140 1.16397 1.14586 1.12130 1.28617 0.88823 0.98742 0.98448 1.85917 1.20815 1.40479 1.30444 1.21568 0.85817 1.00572 1.00154 1.20570 0.93741 1.24580 1.18142 0.91246 1.24936 0.94633 0.96604 0.97128 1.69978 0.97838 1.42398 1.41261 0.86265 0.78616 0.80499 0.81087 1.19354 1.20541 1.20531 1.19817 0.93920 0.94043 0.98005 1.20793 0.99775 0.93035 1.03356 1.20800 0.92086 0.98212 1.01974 0.90665 0.91332 0.91176 0.84614 0.84280 0.92416 0.92358 0.92146 0.89983 0.91038 0.91754 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.07 -0.66 5.88 -104.59 -0.62 -1.27 16 3 C -0.11 -1.12 9.69 -39.61 -0.38 -1.51 16 4 C -0.09 -1.21 8.92 -39.41 -0.35 -1.56 16 5 C 0.12 1.86 6.17 -83.58 -0.52 1.35 16 6 N -0.33 -6.02 3.15 -10.63 -0.03 -6.05 16 7 N -0.10 -1.83 12.44 60.35 0.75 -1.08 16 8 N -0.03 -0.74 13.37 60.35 0.81 0.07 16 9 N -0.33 -7.35 11.57 30.56 0.35 -6.99 16 10 C 0.23 4.80 7.99 -88.88 -0.71 4.09 16 11 S 0.00 -0.08 20.57 -107.50 -2.21 -2.29 16 12 C 0.07 1.65 4.99 36.01 0.18 1.83 16 13 C -0.53 -13.94 9.13 -34.44 -0.31 -14.25 16 14 H 0.07 1.76 7.71 -52.48 -0.40 1.35 16 15 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 16 N -0.88 -24.85 13.29 55.43 0.74 -24.12 16 17 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 C -0.06 -0.70 5.90 -104.44 -0.62 -1.32 16 22 C -0.11 -1.35 8.92 36.01 0.32 -1.02 16 23 C -0.11 -1.12 9.33 -39.61 -0.37 -1.49 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 26 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 27 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 28 H 0.14 1.89 7.46 -52.49 -0.39 1.50 16 29 H 0.06 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.06 1.56 8.14 -51.92 -0.42 1.13 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 34 H 0.06 0.93 7.25 -51.93 -0.38 0.55 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -29.77 321.27 -6.99 -36.76 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.10 Total: -2.73 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -3.11 Total: -13.64 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 2.61 Total: -38.18 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.21 Total: -2.29 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.77 -6.99 -36.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015235875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.298 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds