Wall clock time and date at job start Tue Mar 31 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38301 * 119.93200 * 2 1 4 4 C 1.38097 * 120.06466 * 179.97438 * 3 2 1 5 5 C 1.38844 * 119.93611 * 0.02562 * 4 3 2 6 6 N 1.40219 * 120.06763 * 180.02562 * 5 4 3 7 7 N 1.40598 * 127.40748 * 132.16639 * 6 5 4 8 8 N 1.28894 * 106.85270 * 180.26752 * 7 6 5 9 9 N 1.28411 * 110.40720 * 359.78106 * 8 7 6 10 10 C 1.31568 * 110.51954 * 359.97438 * 9 8 7 11 11 S 1.76192 * 126.48754 * 179.97438 * 10 9 8 12 12 C 1.81000 * 99.99800 * 0.02562 * 11 10 9 13 13 C 1.50701 * 109.47483 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99574 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00287 * 179.72268 * 13 12 11 16 16 N 1.31506 * 120.00062 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99721 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47484 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46885 * 120.00772 * 17 15 13 20 20 H 1.48499 * 109.47478 * 239.99968 * 17 15 13 21 21 C 1.38816 * 119.86824 * 0.27723 * 5 4 3 22 22 C 1.50702 * 120.03584 * 179.72350 * 21 5 4 23 23 C 1.38146 * 119.93073 * 359.40816 * 21 5 4 24 24 H 1.08998 * 109.46827 * 90.00530 * 1 2 3 25 25 H 1.08995 * 109.46897 * 209.99927 * 1 2 3 26 26 H 1.08995 * 109.47506 * 330.00271 * 1 2 3 27 27 H 1.08004 * 119.96522 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.02989 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47008 * 60.00231 * 12 11 10 30 30 H 1.09001 * 109.47583 * 300.00064 * 12 11 10 31 31 H 0.97002 * 120.00194 * 179.97438 * 16 15 13 32 32 H 1.09000 * 109.46605 * 84.68181 * 22 21 5 33 33 H 1.09002 * 109.47113 * 204.68303 * 22 21 5 34 34 H 1.08998 * 109.46727 * 324.68730 * 22 21 5 35 35 H 1.07998 * 119.96964 * 180.34064 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1985 0.0000 4 6 3.5781 1.2017 0.0005 5 6 4.2738 0.0002 0.0005 6 7 5.6759 0.0002 0.0016 7 7 6.5294 -0.7499 0.8297 8 7 7.7365 -0.4417 0.4992 9 7 7.7340 0.4201 -0.4528 10 6 6.5009 0.7224 -0.7979 11 16 6.0128 1.8567 -2.0546 12 6 7.6384 2.3979 -2.6381 13 6 7.4651 3.4016 -3.7488 14 1 6.4738 3.6852 -4.0704 15 6 8.5718 3.9624 -4.3501 16 7 9.7787 3.6212 -3.9549 17 14 8.3567 5.2071 -5.7263 18 1 6.9091 5.4183 -5.9810 19 1 8.9825 6.4946 -5.3315 20 1 9.0078 4.6983 -6.9602 21 6 3.5784 -1.2013 -0.0058 22 6 4.3296 -2.5076 -0.0121 23 6 2.1969 -1.1981 0.0002 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6554 2.1329 -0.0004 28 1 4.1164 2.1380 0.0010 29 1 8.1958 1.5380 -3.0098 30 1 8.1856 2.8573 -1.8149 31 1 10.5574 4.0155 -4.3782 32 1 4.5929 -2.7802 1.0099 33 1 3.7015 -3.2859 -0.4455 34 1 5.2379 -2.4015 -0.6053 35 1 1.6553 -2.1325 0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015235875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:33 Heat of formation + Delta-G solvation = 112.326643 kcal Electronic energy + Delta-G solvation = -19829.684380 eV Core-core repulsion = 16762.497364 eV Total energy + Delta-G solvation = -3067.187017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 4.82 seconds Orbital eigenvalues (eV) -44.19321 -40.78760 -36.56039 -35.34797 -34.15167 -33.39265 -32.58617 -30.80020 -28.32074 -28.18249 -25.76244 -24.93303 -24.43862 -23.16324 -21.81778 -19.81766 -18.75400 -18.20803 -18.01819 -16.73915 -16.54167 -16.15978 -15.59169 -15.28418 -15.18607 -14.66798 -14.61947 -14.33041 -14.29241 -14.09013 -13.89287 -13.52505 -13.27841 -12.85010 -12.79155 -12.78651 -12.49851 -12.44651 -12.34043 -12.23000 -12.15519 -11.79858 -11.62916 -11.35837 -10.76864 -9.93760 -9.65194 -8.95078 -8.33644 -6.52111 -0.68731 -0.26726 0.20302 0.21454 0.92946 0.94713 1.28677 1.44812 1.45228 1.59858 2.36960 2.44743 3.01861 3.25329 3.59942 3.61200 3.79506 3.90686 4.02692 4.20585 4.24756 4.33371 4.48815 4.58350 4.67495 4.83012 4.88057 4.93555 4.96705 5.00358 5.07973 5.23460 5.31115 5.38176 5.50536 5.51180 5.75084 5.86032 6.56881 7.14285 7.18336 8.78513 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.004407 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.381689 B = 6352.204682 C = 7510.779896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.056 4.056 3 C -0.106 4.106 4 C -0.104 4.104 5 C 0.072 3.928 6 N -0.310 5.310 7 N -0.086 5.086 8 N -0.056 5.056 9 N -0.360 5.360 10 C 0.216 3.784 11 S 0.057 5.943 12 C 0.062 3.938 13 C -0.544 4.544 14 H 0.080 0.920 15 C 0.019 3.981 16 N -0.921 5.921 17 Si 0.982 3.018 18 H -0.255 1.255 19 H -0.275 1.275 20 H -0.276 1.276 21 C -0.063 4.063 22 C -0.111 4.111 23 C -0.107 4.107 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.164 0.836 28 H 0.128 0.872 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.272 0.728 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.031 0.969 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.182 -7.180 6.481 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.057 4.057 3 C -0.125 4.125 4 C -0.125 4.125 5 C -0.018 4.018 6 N -0.103 5.103 7 N -0.072 5.072 8 N -0.051 5.051 9 N -0.217 5.217 10 C -0.166 4.166 11 S 0.284 5.716 12 C -0.086 4.086 13 C -0.584 4.584 14 H 0.098 0.902 15 C -0.183 4.183 16 N -0.558 5.558 17 Si 0.804 3.196 18 H -0.178 1.178 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.065 4.065 22 C -0.168 4.168 23 C -0.125 4.125 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.182 0.818 28 H 0.146 0.854 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.050 0.950 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -22.019 -7.566 6.906 24.285 hybrid contribution 1.693 0.520 -0.377 1.810 sum -20.326 -7.046 6.529 22.482 Atomic orbital electron populations 1.20935 0.87601 1.04638 1.03937 1.20545 0.98501 0.92062 0.94551 1.21258 0.91311 1.00182 0.99735 1.21252 0.96204 0.95743 0.99328 1.17827 0.75543 0.96744 1.11710 1.48748 1.07283 1.29975 1.24321 1.82324 0.94626 1.16093 1.14121 1.77777 1.13497 1.07128 1.06700 1.75044 1.18049 1.15507 1.13076 1.28560 0.88973 0.99795 0.99293 1.85350 1.15848 1.40300 1.30076 1.21190 0.88903 0.99280 0.99229 1.20940 0.94355 1.24712 1.18370 0.90213 1.25969 0.94142 0.98550 0.99679 1.70116 0.98894 1.43922 1.42896 0.85148 0.79285 0.77608 0.77516 1.17803 1.20053 1.20104 1.20047 0.95232 0.93190 0.98066 1.20798 0.99027 0.93925 1.03010 1.21208 0.90768 1.00119 1.00373 0.89423 0.89646 0.89859 0.81835 0.85401 0.95506 0.95313 0.91920 0.90003 0.87862 0.94967 0.81552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 71.24 0.71 -0.07 16 2 C -0.06 -0.80 5.88 -19.84 -0.12 -0.91 16 3 C -0.11 -1.86 9.69 22.25 0.22 -1.65 16 4 C -0.10 -2.65 8.92 22.38 0.20 -2.45 16 5 C 0.07 2.14 6.17 38.08 0.24 2.38 16 6 N -0.31 -11.55 3.15 -187.54 -0.59 -12.14 16 7 N -0.09 -3.38 12.44 37.02 0.46 -2.92 16 8 N -0.06 -2.48 13.37 37.02 0.50 -1.99 16 9 N -0.36 -17.16 11.57 -57.22 -0.66 -17.82 16 10 C 0.22 9.18 7.99 179.74 1.44 10.62 16 11 S 0.06 2.34 20.57 -56.49 -1.16 1.18 16 12 C 0.06 3.27 4.99 71.24 0.36 3.63 16 13 C -0.54 -29.17 9.13 25.60 0.23 -28.93 16 14 H 0.08 4.01 7.71 -2.91 -0.02 3.99 16 15 C 0.02 1.02 5.46 84.66 0.46 1.49 16 16 N -0.92 -53.86 13.29 21.45 0.28 -53.57 16 17 Si 0.98 41.46 29.54 68.60 2.03 43.48 16 18 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 19 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 20 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 21 C -0.06 -1.49 5.90 -19.75 -0.12 -1.61 16 22 C -0.11 -2.52 8.92 71.24 0.64 -1.89 16 23 C -0.11 -1.71 9.33 22.25 0.21 -1.50 16 24 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.08 0.37 8.08 -2.39 -0.02 0.35 16 26 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 27 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.13 3.46 7.46 -2.91 -0.02 3.44 16 29 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 1.62 8.05 -2.39 -0.02 1.60 16 34 H 0.03 0.93 7.25 -2.39 -0.02 0.91 16 35 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -68.23 321.27 6.42 -61.81 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 1.11 Total: 2.88 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 4.46 Total: -20.91 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -0.01 Total: -88.45 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.16 Total: 1.18 kcal Total: -68.23 6.42 -61.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015235875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.140 kcal (2) G-P(sol) polarization free energy of solvation -68.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.82 seconds