Wall clock time and date at job start Tue Mar 31 2020 08:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36569 * 127.16837 * 2 1 4 4 S 1.76194 * 126.38558 * 359.97438 * 3 2 1 5 5 C 1.81002 * 100.00213 * 180.24958 * 4 3 2 6 6 C 1.52995 * 109.47495 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47287 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99933 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00280 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99680 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00361 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.47042 * 89.99844 * 11 9 7 13 13 H 1.48497 * 109.47304 * 209.99703 * 11 9 7 14 14 H 1.48500 * 109.47199 * 330.00202 * 11 9 7 15 15 N 1.31445 * 107.23011 * 180.22965 * 3 2 1 16 16 N 1.28511 * 110.08297 * 359.77242 * 15 3 2 17 17 C 1.31273 * 109.95545 * 0.02562 * 16 15 3 18 18 C 1.47847 * 126.46151 * 179.97438 * 17 16 15 19 19 C 1.39995 * 120.55743 * 162.63362 * 18 17 16 20 20 C 1.38354 * 118.28915 * 179.74720 * 19 18 17 21 21 C 1.38349 * 119.30592 * 0.24831 * 20 19 18 22 22 N 1.31916 * 121.08377 * 0.02562 * 21 20 19 23 23 C 1.31706 * 121.87512 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46892 * 264.10282 * 1 2 3 25 25 H 1.08999 * 109.47401 * 24.10070 * 1 2 3 26 26 H 1.08999 * 109.47173 * 144.10150 * 1 2 3 27 27 H 1.09001 * 109.46824 * 299.99897 * 5 4 3 28 28 H 1.08995 * 109.47015 * 59.99485 * 5 4 3 29 29 H 1.09001 * 109.46654 * 299.99576 * 6 5 4 30 30 H 1.08995 * 109.47756 * 59.99514 * 6 5 4 31 31 H 0.97005 * 120.00052 * 180.02562 * 10 9 7 32 32 H 1.08003 * 120.85897 * 0.02562 * 19 18 17 33 33 H 1.07997 * 120.34879 * 180.26975 * 20 19 18 34 34 H 1.08000 * 119.46013 * 179.97438 * 21 20 19 35 35 H 1.07994 * 119.71724 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2901 1.0883 0.0000 4 16 1.7913 2.7781 -0.0006 5 6 3.4119 3.5843 -0.0080 6 6 3.2261 5.1029 -0.0090 7 6 4.5754 5.7740 -0.0158 8 1 5.4754 5.1771 -0.0187 9 6 4.6609 7.1502 -0.0183 10 7 3.5649 7.8771 -0.0152 11 14 6.3333 7.9821 -0.0260 12 1 6.7712 8.2003 -1.4282 13 1 6.2392 9.2893 0.6723 14 1 7.3192 7.1180 0.6716 15 7 3.5258 0.6400 -0.0050 16 7 3.5290 -0.6451 -0.0034 17 6 2.2963 -1.0962 0.0023 18 6 1.8798 -2.5148 0.0053 19 6 0.5769 -2.8733 0.3710 20 6 0.2360 -4.2141 0.3522 21 6 1.1858 -5.1491 -0.0188 22 7 2.4080 -4.7826 -0.3533 23 6 2.7805 -3.5193 -0.3510 24 1 -0.3633 -0.1056 1.0222 25 1 -0.3634 0.9381 -0.4196 26 1 -0.3633 -0.8325 -0.6026 27 1 3.9694 3.2874 0.8803 28 1 3.9626 3.2846 -0.8996 29 1 2.6685 5.4001 -0.8971 30 1 2.6755 5.4022 0.8828 31 1 3.6250 8.8452 -0.0174 32 1 -0.1450 -2.1222 0.6561 33 1 -0.7612 -4.5274 0.6239 34 1 0.9225 -6.1964 -0.0339 35 1 3.7902 -3.2584 -0.6315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021742269.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:58 Heat of formation + Delta-G solvation = 106.837847 kcal Electronic energy + Delta-G solvation = -19167.864251 eV Core-core repulsion = 16100.439222 eV Total energy + Delta-G solvation = -3067.425029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.84673 -40.32550 -35.37623 -33.78069 -33.36498 -32.35824 -30.99932 -29.58636 -27.99696 -25.40636 -24.42311 -24.13319 -22.48316 -21.53703 -20.89495 -17.97952 -17.44862 -16.77043 -16.61081 -16.51068 -16.15316 -15.69334 -14.52658 -14.35538 -14.28691 -14.01903 -13.92110 -13.69085 -13.60764 -12.88557 -12.37721 -12.19638 -11.91200 -11.51392 -11.13044 -10.90524 -10.75025 -10.64403 -10.40784 -10.32717 -10.09654 -10.07095 -9.91367 -9.73734 -9.21818 -9.09206 -8.46727 -7.37326 -6.11283 -4.15297 0.29331 0.78840 1.27216 1.76516 2.39159 2.68218 2.77691 3.29346 3.35576 3.40329 3.46394 3.77172 4.16250 4.23515 4.34372 4.39364 4.40323 4.54519 4.70208 4.90821 5.01437 5.14302 5.25296 5.30993 5.47295 5.54970 5.78445 5.86312 5.95025 6.14572 6.19654 6.51164 6.62849 7.43203 7.49069 7.53509 7.84710 8.20423 8.56872 8.89339 9.49293 10.99674 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.042890 B = 0.002830 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.672389 B = 9892.026504 C =10499.452585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.465 5.465 3 C 0.181 3.819 4 S -0.028 6.028 5 C -0.074 4.074 6 C 0.036 3.964 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.899 3.101 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.272 1.272 15 N -0.287 5.287 16 N -0.261 5.261 17 C 0.201 3.799 18 C -0.054 4.054 19 C -0.075 4.075 20 C -0.168 4.168 21 C 0.104 3.896 22 N -0.478 5.478 23 C 0.143 3.857 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.263 0.737 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 -22.288 0.466 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.160 5.160 3 C -0.192 4.192 4 S 0.203 5.797 5 C -0.222 4.222 6 C -0.004 4.004 7 C -0.558 4.558 8 H 0.080 0.920 9 C -0.142 4.142 10 N -0.531 5.531 11 Si 0.726 3.274 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.196 1.196 15 N -0.132 5.132 16 N -0.102 5.102 17 C -0.066 4.066 18 C -0.059 4.059 19 C -0.102 4.102 20 C -0.188 4.188 21 C -0.054 4.054 22 N -0.186 5.186 23 C -0.016 4.016 24 H 0.105 0.895 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.178 0.822 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.053 -22.222 0.224 24.820 hybrid contribution -0.107 0.668 0.290 0.736 sum -11.160 -21.553 0.513 24.277 Atomic orbital electron populations 1.22340 0.75308 1.05812 1.04129 1.46308 1.08432 1.04836 1.56379 1.27353 0.89690 0.96656 1.05503 1.85688 1.17904 0.84770 1.91373 1.24049 0.90700 1.01475 1.05991 1.18990 0.98564 0.84240 0.98583 1.21048 0.91714 0.91298 1.51767 0.91994 1.25004 0.96960 0.97370 0.94893 1.69959 1.27330 1.05785 1.50050 0.86476 0.83823 0.78804 0.78267 1.20484 1.21118 1.19642 1.74822 1.15561 1.02269 1.20525 1.74273 1.16199 1.03510 1.16235 1.22551 0.87140 0.88419 1.08486 1.18499 0.95346 0.88388 1.03649 1.21886 0.95035 0.97310 0.96011 1.22063 1.01644 0.93092 1.01952 1.22976 0.88518 1.00495 0.93379 1.67813 1.18427 1.18655 1.13702 1.23014 0.99694 0.86447 0.92455 0.89504 0.88057 0.88867 0.89468 0.89475 0.95382 0.95367 0.92725 0.84279 0.84064 0.82250 0.81263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 9.34 59.85 0.56 1.10 16 2 N -0.47 -6.26 3.24 -121.45 -0.39 -6.65 16 3 C 0.18 3.07 8.07 -88.17 -0.71 2.36 16 4 S -0.03 -0.48 21.68 -107.50 -2.33 -2.81 16 5 C -0.07 -1.54 5.17 37.16 0.19 -1.35 16 6 C 0.04 0.89 4.98 -27.89 -0.14 0.75 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 11 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 N -0.29 -5.54 11.59 30.71 0.36 -5.19 16 16 N -0.26 -4.61 12.01 32.60 0.39 -4.22 16 17 C 0.20 2.86 7.73 -153.75 -1.19 1.67 16 18 C -0.05 -0.60 5.88 -104.82 -0.62 -1.21 16 19 C -0.07 -0.59 8.87 -38.88 -0.34 -0.93 16 20 C -0.17 -1.03 10.10 -39.50 -0.40 -1.43 16 21 C 0.10 0.77 11.17 -17.47 -0.20 0.57 16 22 N -0.48 -5.00 10.35 -12.91 -0.13 -5.13 16 23 C 0.14 1.60 10.87 -17.12 -0.19 1.42 16 24 H 0.09 0.52 7.81 -51.93 -0.41 0.12 16 25 H 0.10 0.79 7.68 -51.93 -0.40 0.39 16 26 H 0.09 0.53 6.50 -51.93 -0.34 0.19 16 27 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 28 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.14 0.79 5.03 -52.48 -0.26 0.52 16 33 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 34 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.17 1.89 7.97 -52.49 -0.42 1.47 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -33.07 319.47 -8.92 -42.00 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -3.90 Total: -3.80 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -3.44 Total: -10.05 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.96 Total: -46.45 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.33 Total: -2.81 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.07 -8.92 -42.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021742269.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.833 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds