Wall clock time and date at job start Tue Mar 31 2020 08:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36569 * 127.16837 * 2 1 4 4 S 1.76194 * 126.38558 * 359.97438 * 3 2 1 5 5 C 1.81002 * 100.00213 * 180.24958 * 4 3 2 6 6 C 1.52995 * 109.47495 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47287 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99933 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00280 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99680 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00361 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.47042 * 89.99844 * 11 9 7 13 13 H 1.48497 * 109.47304 * 209.99703 * 11 9 7 14 14 H 1.48500 * 109.47199 * 330.00202 * 11 9 7 15 15 N 1.31445 * 107.23011 * 180.22965 * 3 2 1 16 16 N 1.28511 * 110.08297 * 359.77242 * 15 3 2 17 17 C 1.31273 * 109.95545 * 0.02562 * 16 15 3 18 18 C 1.47847 * 126.46151 * 179.97438 * 17 16 15 19 19 C 1.39995 * 120.55743 * 162.63362 * 18 17 16 20 20 C 1.38354 * 118.28915 * 179.74720 * 19 18 17 21 21 C 1.38349 * 119.30592 * 0.24831 * 20 19 18 22 22 N 1.31916 * 121.08377 * 0.02562 * 21 20 19 23 23 C 1.31706 * 121.87512 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46892 * 264.10282 * 1 2 3 25 25 H 1.08999 * 109.47401 * 24.10070 * 1 2 3 26 26 H 1.08999 * 109.47173 * 144.10150 * 1 2 3 27 27 H 1.09001 * 109.46824 * 299.99897 * 5 4 3 28 28 H 1.08995 * 109.47015 * 59.99485 * 5 4 3 29 29 H 1.09001 * 109.46654 * 299.99576 * 6 5 4 30 30 H 1.08995 * 109.47756 * 59.99514 * 6 5 4 31 31 H 0.97005 * 120.00052 * 180.02562 * 10 9 7 32 32 H 1.08003 * 120.85897 * 0.02562 * 19 18 17 33 33 H 1.07997 * 120.34879 * 180.26975 * 20 19 18 34 34 H 1.08000 * 119.46013 * 179.97438 * 21 20 19 35 35 H 1.07994 * 119.71724 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2901 1.0883 0.0000 4 16 1.7913 2.7781 -0.0006 5 6 3.4119 3.5843 -0.0080 6 6 3.2261 5.1029 -0.0090 7 6 4.5754 5.7740 -0.0158 8 1 5.4754 5.1771 -0.0187 9 6 4.6609 7.1502 -0.0183 10 7 3.5649 7.8771 -0.0152 11 14 6.3333 7.9821 -0.0260 12 1 6.7712 8.2003 -1.4282 13 1 6.2392 9.2893 0.6723 14 1 7.3192 7.1180 0.6716 15 7 3.5258 0.6400 -0.0050 16 7 3.5290 -0.6451 -0.0034 17 6 2.2963 -1.0962 0.0023 18 6 1.8798 -2.5148 0.0053 19 6 0.5769 -2.8733 0.3710 20 6 0.2360 -4.2141 0.3522 21 6 1.1858 -5.1491 -0.0188 22 7 2.4080 -4.7826 -0.3533 23 6 2.7805 -3.5193 -0.3510 24 1 -0.3633 -0.1056 1.0222 25 1 -0.3634 0.9381 -0.4196 26 1 -0.3633 -0.8325 -0.6026 27 1 3.9694 3.2874 0.8803 28 1 3.9626 3.2846 -0.8996 29 1 2.6685 5.4001 -0.8971 30 1 2.6755 5.4022 0.8828 31 1 3.6250 8.8452 -0.0174 32 1 -0.1450 -2.1222 0.6561 33 1 -0.7612 -4.5274 0.6239 34 1 0.9225 -6.1964 -0.0339 35 1 3.7902 -3.2584 -0.6315 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021742269.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:58 Heat of formation + Delta-G solvation = 87.061838 kcal Electronic energy + Delta-G solvation = -19168.721803 eV Core-core repulsion = 16100.439222 eV Total energy + Delta-G solvation = -3068.282581 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.00368 -41.01388 -36.40102 -35.80633 -34.21436 -33.09991 -32.93281 -30.64725 -28.82567 -27.38276 -25.30084 -24.92062 -23.71933 -22.99554 -22.15576 -19.03455 -18.70195 -18.12399 -17.69042 -17.56329 -17.06682 -16.66494 -16.52468 -15.65587 -15.39899 -14.99341 -14.91149 -14.61202 -14.46933 -14.10987 -13.75371 -13.55260 -13.00778 -12.98869 -12.82886 -12.52035 -12.35385 -12.08636 -11.82731 -11.74984 -11.54932 -11.40541 -11.17022 -10.81846 -10.60500 -10.57986 -10.00799 -8.71314 -8.24785 -6.36278 -0.48806 -0.05525 0.16980 0.69251 1.05232 1.41829 1.42404 1.45938 1.54496 1.61677 2.40752 2.75885 2.93235 3.09348 3.43226 3.53398 3.68994 3.74304 3.89657 4.14967 4.16437 4.17718 4.31613 4.43590 4.44879 4.50530 4.70661 4.75992 4.80786 4.98601 5.08125 5.35110 5.44200 5.50823 5.62092 5.71960 6.10688 6.75682 6.86974 7.32644 7.36185 8.86720 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.042890 B = 0.002830 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.672389 B = 9892.026504 C =10499.452585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.457 5.457 3 C 0.160 3.840 4 S 0.016 5.984 5 C -0.071 4.071 6 C 0.044 3.956 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.008 3.992 10 N -0.926 5.926 11 Si 0.966 3.034 12 H -0.271 1.271 13 H -0.278 1.278 14 H -0.266 1.266 15 N -0.328 5.328 16 N -0.308 5.308 17 C 0.224 3.776 18 C -0.081 4.081 19 C -0.065 4.065 20 C -0.151 4.151 21 C 0.105 3.895 22 N -0.505 5.505 23 C 0.130 3.870 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.010 0.990 30 H 0.011 0.989 31 H 0.267 0.733 32 H 0.166 0.834 33 H 0.186 0.814 34 H 0.194 0.806 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.291 -24.452 0.882 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.150 5.150 3 C -0.215 4.215 4 S 0.246 5.754 5 C -0.220 4.220 6 C 0.005 3.995 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.191 4.191 10 N -0.566 5.566 11 Si 0.790 3.210 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.191 1.191 15 N -0.173 5.173 16 N -0.149 5.149 17 C -0.044 4.044 18 C -0.086 4.086 19 C -0.093 4.093 20 C -0.170 4.170 21 C -0.052 4.052 22 N -0.213 5.213 23 C -0.029 4.029 24 H 0.133 0.867 25 H 0.123 0.877 26 H 0.141 0.859 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.183 0.817 33 H 0.203 0.797 34 H 0.210 0.790 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.366 -24.399 0.637 27.827 hybrid contribution 0.428 1.052 0.168 1.148 sum -12.937 -23.347 0.805 26.704 Atomic orbital electron populations 1.22876 0.72008 1.07395 1.06674 1.46551 1.10174 1.03291 1.54962 1.27165 0.90100 0.97160 1.07040 1.85239 1.13526 0.84645 1.92013 1.23587 0.93691 0.99551 1.05200 1.18737 0.97111 0.86912 0.96720 1.21458 0.92878 0.92061 1.51770 0.92112 1.25887 1.00822 0.98063 0.94331 1.70063 1.29486 1.06203 1.50813 0.85427 0.79177 0.77763 0.78591 1.19684 1.20367 1.19080 1.74696 1.17367 1.03447 1.21751 1.74177 1.18559 1.02984 1.19148 1.23093 0.86388 0.89818 1.05117 1.18534 0.97202 0.86290 1.06605 1.22241 0.93670 0.98956 0.94393 1.22531 1.03120 0.91766 0.99630 1.23684 0.87566 1.02571 0.91364 1.67826 1.20467 1.18021 1.14987 1.22832 0.99436 0.87216 0.93408 0.86678 0.87741 0.85851 0.90293 0.90312 0.97130 0.97085 0.92411 0.81653 0.79650 0.78964 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 9.34 127.77 1.19 1.84 16 2 N -0.46 -11.71 3.24 -538.16 -1.74 -13.45 16 3 C 0.16 5.48 8.07 179.49 1.45 6.93 16 4 S 0.02 0.55 21.68 -56.49 -1.22 -0.67 16 5 C -0.07 -3.10 5.17 71.98 0.37 -2.72 16 6 C 0.04 2.30 4.98 29.84 0.15 2.44 16 7 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.01 0.46 5.46 84.66 0.46 0.92 16 10 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 11 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 N -0.33 -13.19 11.59 -56.75 -0.66 -13.84 16 16 N -0.31 -11.33 12.01 -50.79 -0.61 -11.94 16 17 C 0.22 6.31 7.73 136.21 1.05 7.36 16 18 C -0.08 -1.69 5.88 -19.99 -0.12 -1.80 16 19 C -0.07 -0.76 8.87 22.72 0.20 -0.56 16 20 C -0.15 -1.09 10.10 22.32 0.23 -0.87 16 21 C 0.11 1.17 11.17 84.71 0.95 2.11 16 22 N -0.50 -9.82 10.35 -194.75 -2.01 -11.84 16 23 C 0.13 2.90 10.87 85.03 0.92 3.82 16 24 H 0.12 0.88 7.81 -2.39 -0.02 0.86 16 25 H 0.10 1.33 7.68 -2.39 -0.02 1.31 16 26 H 0.12 0.85 6.50 -2.39 -0.02 0.83 16 27 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 28 H 0.08 3.50 8.14 -2.40 -0.02 3.48 16 29 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 32 H 0.17 0.98 5.03 -2.91 -0.01 0.97 16 33 H 0.19 -0.22 8.06 -2.91 -0.02 -0.24 16 34 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 35 H 0.15 3.71 7.97 -2.91 -0.02 3.69 16 Total: -1.00 -75.86 319.47 4.27 -71.60 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: 1.11 Total: -0.42 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 7.09 Total: -10.97 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -4.74 Total: -105.68 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -1.22 Total: -0.67 kcal Total: -75.86 4.27 -71.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021742269.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.660 kcal (2) G-P(sol) polarization free energy of solvation -75.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds