Wall clock time and date at job start Tue Mar 31 2020 08:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99633 * 2 1 4 4 C 1.50690 * 109.47174 * 66.04455 * 3 2 1 5 5 H 1.08006 * 120.00413 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00132 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99694 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00357 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47139 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46873 * 120.00194 * 8 6 4 11 11 H 1.48496 * 109.47473 * 240.00266 * 8 6 4 12 12 C 1.46902 * 111.00377 * 236.04211 * 2 1 3 13 13 C 1.50701 * 109.47253 * 293.95643 * 12 2 1 14 14 C 1.36540 * 120.03896 * 105.01728 * 13 12 2 15 15 C 1.40767 * 118.17715 * 179.97438 * 14 13 12 16 16 C 1.40427 * 121.36151 * 179.97438 * 15 14 13 17 17 C 1.36148 * 119.62091 * 180.02562 * 16 15 14 18 18 C 1.39351 * 120.86343 * 359.64925 * 17 16 15 19 19 C 1.36076 * 121.06855 * 0.69012 * 18 17 16 20 20 C 1.40593 * 119.74872 * 359.35410 * 19 18 17 21 21 N 1.33680 * 121.06473 * 180.29970 * 20 19 18 22 22 C 1.31214 * 121.31023 * 179.97438 * 21 20 19 23 23 Cl 1.73601 * 119.14925 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.46850 * 183.95363 * 1 2 3 25 25 H 1.08997 * 109.47393 * 303.95474 * 1 2 3 26 26 H 1.09002 * 109.46812 * 63.96224 * 1 2 3 27 27 H 1.09008 * 109.46836 * 186.04614 * 3 2 1 28 28 H 1.08997 * 109.46747 * 306.03755 * 3 2 1 29 29 H 0.97001 * 120.00310 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47276 * 173.95120 * 12 2 1 31 31 H 1.08997 * 109.46534 * 53.95390 * 12 2 1 32 32 H 1.08002 * 120.90860 * 359.96053 * 14 13 12 33 33 H 1.07996 * 120.18633 * 0.05361 * 16 15 14 34 34 H 1.07997 * 119.56112 * 179.97438 * 17 16 15 35 35 H 1.08004 * 119.46022 * 180.32398 * 18 17 16 36 36 H 1.08002 * 120.12853 * 179.63736 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2983 5 1 1.0738 1.5115 2.0484 6 6 2.0275 3.3492 1.5288 7 7 2.7126 4.0016 0.6153 8 14 1.5824 4.1871 3.1379 9 1 0.8143 3.2448 3.9908 10 1 2.8238 4.5937 3.8441 11 1 0.7558 5.3886 2.8584 12 6 1.9956 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9728 14 6 0.6427 -2.7694 -1.7305 15 6 0.3405 -4.1317 -1.5449 16 6 -0.6695 -4.7641 -2.2878 17 6 -0.9325 -6.0835 -2.0790 18 6 -0.2075 -6.8175 -1.1423 19 6 0.7733 -6.2350 -0.4004 20 6 1.0740 -4.8743 -0.5866 21 7 2.0361 -4.2770 0.1236 22 6 2.3211 -3.0075 -0.0466 23 17 3.5822 -2.2888 0.9057 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3634 0.5740 0.8524 26 1 -0.3633 0.4511 -0.9234 27 1 3.0797 1.3445 -0.1083 28 1 1.5611 1.9273 -0.8310 29 1 2.9872 4.9178 0.7772 30 1 3.0798 -0.6611 -1.1755 31 1 1.5612 -0.3873 -2.0627 32 1 0.1026 -2.1747 -2.4524 33 1 -1.2341 -4.2071 -3.0208 34 1 -1.7098 -6.5688 -2.6506 35 1 -0.4316 -7.8642 -0.9988 36 1 1.3219 -6.8169 0.3255 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037495809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:33 Heat of formation + Delta-G solvation = 51.921144 kcal Electronic energy + Delta-G solvation = -20019.416437 eV Core-core repulsion = 16915.273584 eV Total energy + Delta-G solvation = -3104.142853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.95046 -37.85602 -36.43975 -35.94615 -33.72346 -32.50084 -30.88078 -30.14583 -27.26492 -26.79372 -24.30720 -24.10915 -22.42948 -22.07720 -20.32142 -18.28628 -17.48443 -16.68660 -16.19019 -15.20921 -15.01136 -14.67326 -14.53321 -14.15784 -14.04481 -13.85217 -13.42874 -13.30688 -12.50113 -12.46371 -11.96516 -11.83238 -11.71984 -11.32719 -11.23101 -10.94553 -10.86251 -10.76065 -10.60986 -10.53171 -10.39218 -9.89485 -9.60520 -9.21305 -8.59705 -8.43776 -8.35072 -7.29698 -6.02935 -4.03591 0.25576 0.67289 1.87410 2.08661 2.73819 3.31454 3.39179 3.44369 3.95460 4.28330 4.43764 4.47053 4.62166 4.70566 4.83133 4.97000 5.08548 5.14101 5.21114 5.33773 5.59411 5.63404 5.80703 5.84365 5.99054 6.06558 6.13277 6.20743 6.25658 6.31147 6.36408 6.65609 6.71496 7.24727 7.29739 7.68727 7.78575 8.04775 8.15497 8.51130 9.04085 9.60525 11.08001 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026878 B = 0.003931 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.492251 B = 7120.331645 C = 7522.147099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.528 5.528 3 C 0.195 3.805 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.090 3.910 13 C -0.100 4.100 14 C -0.050 4.050 15 C -0.102 4.102 16 C -0.092 4.092 17 C -0.122 4.122 18 C -0.104 4.104 19 C -0.091 4.091 20 C 0.137 3.863 21 N -0.477 5.477 22 C 0.233 3.767 23 Cl -0.002 7.002 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.012 0.988 27 H 0.032 0.968 28 H -0.008 1.008 29 H 0.260 0.740 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.145 0.855 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 -18.905 -7.114 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.252 5.252 3 C 0.070 3.930 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.039 4.039 13 C -0.103 4.103 14 C -0.077 4.077 15 C -0.104 4.104 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.124 4.124 19 C -0.110 4.110 20 C 0.015 3.985 21 N -0.188 5.188 22 C 0.054 3.946 23 Cl 0.027 6.973 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.010 0.990 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.162 0.838 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.676 -19.456 -6.016 20.895 hybrid contribution -0.795 1.518 -0.378 1.755 sum -5.471 -17.938 -6.394 19.814 Atomic orbital electron populations 1.22244 0.88902 0.99370 1.00707 1.62148 1.06869 1.17888 1.38324 1.19746 0.95524 0.80935 0.96762 1.21173 1.34632 0.96800 1.01626 0.91770 1.24971 0.95326 0.97357 0.96927 1.69963 1.38495 1.11406 1.34004 0.86465 0.78176 0.79299 0.83642 1.19648 1.21019 1.21168 1.21057 1.01403 0.87425 0.93992 1.20467 0.96157 0.98099 0.95580 1.21380 0.95105 0.93282 0.97923 1.18853 0.98461 0.94530 0.98605 1.20975 0.96299 0.95124 0.98636 1.20896 1.00038 0.94362 0.98670 1.20870 0.95526 1.00229 0.95775 1.20776 0.98000 0.92281 0.99916 1.18669 0.92335 0.94368 0.93078 1.67426 1.16341 1.10061 1.24989 1.21862 0.91951 0.89242 0.91587 1.98451 1.48148 1.80564 1.70140 0.94080 0.90455 0.96960 0.94970 0.99039 0.93005 0.89406 0.94296 0.83757 0.85192 0.85595 0.85359 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.15 60.07 0.55 1.25 16 2 N -0.53 -11.04 4.62 -245.83 -1.13 -12.18 16 3 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 4 C -0.50 -13.93 8.46 -34.44 -0.29 -14.22 16 5 H 0.06 1.78 7.12 -52.48 -0.37 1.41 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 C 0.09 1.57 4.41 -4.97 -0.02 1.54 16 13 C -0.10 -1.57 4.42 -104.78 -0.46 -2.04 16 14 C -0.05 -0.67 8.93 -39.24 -0.35 -1.02 16 15 C -0.10 -1.32 5.74 -106.80 -0.61 -1.94 16 16 C -0.09 -0.91 9.77 -39.51 -0.39 -1.29 16 17 C -0.12 -1.04 9.96 -39.92 -0.40 -1.43 16 18 C -0.10 -0.92 9.94 -39.94 -0.40 -1.32 16 19 C -0.09 -1.04 9.98 -39.47 -0.39 -1.43 16 20 C 0.14 1.96 6.60 -84.86 -0.56 1.40 16 21 N -0.48 -7.84 10.31 -8.10 -0.08 -7.92 16 22 C 0.23 3.94 7.26 -17.36 -0.13 3.81 16 23 Cl 0.00 -0.03 27.61 -51.86 -1.43 -1.46 16 24 H 0.04 0.71 6.88 -51.93 -0.36 0.35 16 25 H 0.08 1.61 6.76 -51.93 -0.35 1.26 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.03 0.87 7.93 -51.92 -0.41 0.46 16 28 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.09 1.55 7.35 -51.93 -0.38 1.17 16 31 H 0.04 0.63 7.93 -51.93 -0.41 0.22 16 32 H 0.14 1.56 8.01 -52.49 -0.42 1.14 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -30.79 320.27 -10.06 -40.85 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: -4.38 Total: -4.71 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -3.57 Total: -10.33 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.48 Total: -45.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.43 Total: -1.46 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.79 -10.06 -40.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037495809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.769 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds