Wall clock time and date at job start Tue Mar 31 2020 08:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99633 * 2 1 4 4 C 1.50690 * 109.47174 * 66.04455 * 3 2 1 5 5 H 1.08006 * 120.00413 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00132 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99694 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00357 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47139 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46873 * 120.00194 * 8 6 4 11 11 H 1.48496 * 109.47473 * 240.00266 * 8 6 4 12 12 C 1.46902 * 111.00377 * 236.04211 * 2 1 3 13 13 C 1.50701 * 109.47253 * 293.95643 * 12 2 1 14 14 C 1.36540 * 120.03896 * 105.01728 * 13 12 2 15 15 C 1.40767 * 118.17715 * 179.97438 * 14 13 12 16 16 C 1.40427 * 121.36151 * 179.97438 * 15 14 13 17 17 C 1.36148 * 119.62091 * 180.02562 * 16 15 14 18 18 C 1.39351 * 120.86343 * 359.64925 * 17 16 15 19 19 C 1.36076 * 121.06855 * 0.69012 * 18 17 16 20 20 C 1.40593 * 119.74872 * 359.35410 * 19 18 17 21 21 N 1.33680 * 121.06473 * 180.29970 * 20 19 18 22 22 C 1.31214 * 121.31023 * 179.97438 * 21 20 19 23 23 Cl 1.73601 * 119.14925 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.46850 * 183.95363 * 1 2 3 25 25 H 1.08997 * 109.47393 * 303.95474 * 1 2 3 26 26 H 1.09002 * 109.46812 * 63.96224 * 1 2 3 27 27 H 1.09008 * 109.46836 * 186.04614 * 3 2 1 28 28 H 1.08997 * 109.46747 * 306.03755 * 3 2 1 29 29 H 0.97001 * 120.00310 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47276 * 173.95120 * 12 2 1 31 31 H 1.08997 * 109.46534 * 53.95390 * 12 2 1 32 32 H 1.08002 * 120.90860 * 359.96053 * 14 13 12 33 33 H 1.07996 * 120.18633 * 0.05361 * 16 15 14 34 34 H 1.07997 * 119.56112 * 179.97438 * 17 16 15 35 35 H 1.08004 * 119.46022 * 180.32398 * 18 17 16 36 36 H 1.08002 * 120.12853 * 179.63736 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 1.2983 5 1 1.0738 1.5115 2.0484 6 6 2.0275 3.3492 1.5288 7 7 2.7126 4.0016 0.6153 8 14 1.5824 4.1871 3.1379 9 1 0.8143 3.2448 3.9908 10 1 2.8238 4.5937 3.8441 11 1 0.7558 5.3886 2.8584 12 6 1.9956 -0.7660 -1.1375 13 6 1.6370 -2.2205 -0.9728 14 6 0.6427 -2.7694 -1.7305 15 6 0.3405 -4.1317 -1.5449 16 6 -0.6695 -4.7641 -2.2878 17 6 -0.9325 -6.0835 -2.0790 18 6 -0.2075 -6.8175 -1.1423 19 6 0.7733 -6.2350 -0.4004 20 6 1.0740 -4.8743 -0.5866 21 7 2.0361 -4.2770 0.1236 22 6 2.3211 -3.0075 -0.0466 23 17 3.5822 -2.2888 0.9057 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3634 0.5740 0.8524 26 1 -0.3633 0.4511 -0.9234 27 1 3.0797 1.3445 -0.1083 28 1 1.5611 1.9273 -0.8310 29 1 2.9872 4.9178 0.7772 30 1 3.0798 -0.6611 -1.1755 31 1 1.5612 -0.3873 -2.0627 32 1 0.1026 -2.1747 -2.4524 33 1 -1.2341 -4.2071 -3.0208 34 1 -1.7098 -6.5688 -2.6506 35 1 -0.4316 -7.8642 -0.9988 36 1 1.3219 -6.8169 0.3255 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037495809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:32 Heat of formation + Delta-G solvation = 33.114132 kcal Electronic energy + Delta-G solvation = -20020.231970 eV Core-core repulsion = 16915.273584 eV Total energy + Delta-G solvation = -3104.958386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.95142 -39.01034 -37.86826 -37.12090 -35.09132 -34.27828 -32.03338 -31.03406 -29.16146 -28.16950 -25.85967 -25.20259 -23.67359 -23.11365 -21.93322 -19.24544 -18.55107 -18.45820 -17.46923 -16.85550 -16.23196 -16.02746 -15.58730 -15.52774 -15.37437 -15.12399 -14.74829 -14.25838 -14.00501 -13.65906 -13.52120 -13.29974 -12.96713 -12.70128 -12.65775 -12.57101 -12.37662 -12.26297 -12.07125 -11.93295 -11.77275 -11.50536 -11.27540 -10.68545 -10.59454 -9.62755 -9.24462 -8.97232 -8.18137 -6.26585 -0.68293 -0.31718 0.88290 0.95266 1.40492 1.42172 1.54925 1.81101 2.41833 2.99708 3.14849 3.25039 3.44446 3.59284 3.61494 3.78027 4.04079 4.11203 4.29072 4.39291 4.41555 4.51293 4.66546 4.72298 4.76376 4.93273 4.96395 5.07185 5.09622 5.21721 5.33281 5.38283 5.43124 5.49503 5.67339 5.87961 6.07394 6.33853 6.60286 6.63386 6.89173 7.42422 8.92833 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026878 B = 0.003931 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.492251 B = 7120.331645 C = 7522.147099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.538 5.538 3 C 0.213 3.787 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.963 3.037 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.097 3.903 13 C -0.122 4.122 14 C -0.033 4.033 15 C -0.115 4.115 16 C -0.094 4.094 17 C -0.111 4.111 18 C -0.084 4.084 19 C -0.116 4.116 20 C 0.112 3.888 21 N -0.498 5.498 22 C 0.213 3.787 23 Cl -0.028 7.028 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.022 0.978 27 H 0.006 0.994 28 H -0.031 1.031 29 H 0.264 0.736 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.173 0.827 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 -21.071 -8.115 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.261 5.261 3 C 0.087 3.913 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.194 4.194 7 N -0.574 5.574 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.203 1.203 12 C -0.031 4.031 13 C -0.126 4.126 14 C -0.060 4.060 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.129 4.129 18 C -0.103 4.103 19 C -0.135 4.135 20 C -0.009 4.009 21 N -0.210 5.210 22 C 0.035 3.965 23 Cl 0.001 6.999 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.024 0.976 28 H -0.013 1.013 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.190 0.810 33 H 0.177 0.823 34 H 0.183 0.817 35 H 0.182 0.818 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.438 -21.647 -7.022 23.942 hybrid contribution -0.070 1.916 -0.186 1.926 sum -7.508 -19.731 -7.208 22.308 Atomic orbital electron populations 1.22163 0.87671 1.00369 1.00245 1.61981 1.08012 1.15354 1.40801 1.19347 0.93797 0.83150 0.95046 1.21458 1.34453 0.97272 1.02366 0.92255 1.25818 0.95160 0.98076 1.00341 1.70076 1.39490 1.11842 1.35956 0.85418 0.78003 0.78282 0.79428 1.19059 1.20646 1.20274 1.20949 1.00657 0.88342 0.93160 1.20211 0.98170 0.96761 0.97416 1.21700 0.93526 0.93842 0.96895 1.19102 0.99324 0.94342 0.98889 1.21347 0.95353 0.96017 0.98518 1.21420 0.99871 0.93817 0.97744 1.21357 0.93303 1.01855 0.93827 1.20984 0.99677 0.91371 1.01466 1.19179 0.92360 0.95718 0.93642 1.67346 1.17592 1.09930 1.26091 1.21846 0.92388 0.89879 0.92429 1.98427 1.49478 1.81036 1.70999 0.91935 0.92551 0.95941 0.97624 1.01315 0.92763 0.90722 0.92813 0.80977 0.82269 0.81683 0.81828 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.67 9.15 127.69 1.17 2.84 16 2 N -0.54 -23.06 4.62 -931.66 -4.30 -27.36 16 3 C 0.21 11.19 4.72 85.55 0.40 11.60 16 4 C -0.52 -29.37 8.46 25.60 0.22 -29.15 16 5 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 6 C 0.00 0.23 5.46 84.66 0.46 0.69 16 7 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 8 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.10 3.46 4.41 85.56 0.38 3.83 16 13 C -0.12 -3.86 4.42 -19.96 -0.09 -3.94 16 14 C -0.03 -0.82 8.93 22.49 0.20 -0.62 16 15 C -0.11 -2.68 5.74 -21.27 -0.12 -2.80 16 16 C -0.09 -1.43 9.77 22.32 0.22 -1.21 16 17 C -0.11 -1.29 9.96 22.05 0.22 -1.07 16 18 C -0.08 -1.12 9.94 22.03 0.22 -0.90 16 19 C -0.12 -2.42 9.98 22.34 0.22 -2.19 16 20 C 0.11 3.10 6.60 40.29 0.27 3.37 16 21 N -0.50 -16.66 10.31 -179.53 -1.85 -18.51 16 22 C 0.21 7.43 7.26 85.08 0.62 8.05 16 23 Cl -0.03 -1.04 27.61 -2.72 -0.08 -1.11 16 24 H 0.06 2.10 6.88 -2.39 -0.02 2.08 16 25 H 0.06 2.36 6.76 -2.39 -0.02 2.35 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.01 0.32 7.93 -2.38 -0.02 0.30 16 28 H -0.03 -1.73 8.12 -2.39 -0.02 -1.75 16 29 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.07 2.80 7.35 -2.39 -0.02 2.78 16 31 H 0.05 1.72 7.93 -2.39 -0.02 1.70 16 32 H 0.17 3.15 8.01 -2.91 -0.02 3.12 16 33 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 35 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -69.53 320.27 1.55 -67.98 By element: Atomic # 1 Polarization: -1.68 SS G_CDS: 1.09 Total: -0.59 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.38 Total: -11.52 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -5.87 Total: -101.62 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.11 kcal Total: -69.53 1.55 -67.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037495809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.092 kcal (2) G-P(sol) polarization free energy of solvation -69.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds