Wall clock time and date at job start Tue Mar 31 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48496 * 109.46837 * 269.99591 * 3 2 1 5 5 H 1.48503 * 109.46972 * 29.99912 * 3 2 1 6 6 H 1.48492 * 109.46978 * 149.99896 * 3 2 1 7 7 C 1.38819 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99423 * 197.00431 * 7 2 1 9 9 N 1.36938 * 120.00008 * 16.99995 * 7 2 1 10 10 C 1.47072 * 120.88000 * 206.57915 * 9 7 2 11 11 C 1.53243 * 108.52225 * 231.21077 * 10 9 7 12 12 N 1.46900 * 109.33900 * 306.17225 * 11 10 9 13 13 C 1.38326 * 111.00131 * 187.25500 * 12 11 10 14 14 N 1.32472 * 120.52882 * 359.71472 * 13 12 11 15 15 C 1.32079 * 121.18806 * 179.80054 * 14 13 12 16 16 N 1.31289 * 122.18185 * 0.47512 * 15 14 13 17 17 C 1.33900 * 121.04201 * 359.77289 * 16 15 14 18 18 S 1.75749 * 131.28679 * 179.97438 * 17 16 15 19 19 C 1.75350 * 92.18490 * 180.02562 * 18 17 16 20 20 C 1.31891 * 111.39789 * 0.02562 * 19 18 17 21 21 C 1.39764 * 119.10073 * 0.02562 * 17 16 15 22 22 C 1.46899 * 111.26960 * 63.09979 * 12 11 10 23 23 C 1.47076 * 120.88091 * 26.60545 * 9 7 2 24 24 H 0.96999 * 120.00043 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.63258 * 111.50209 * 10 9 7 26 26 H 1.08999 * 109.63192 * 350.91817 * 10 9 7 27 27 H 1.08998 * 109.49602 * 186.21272 * 11 10 9 28 28 H 1.09004 * 109.49266 * 66.12911 * 11 10 9 29 29 H 1.08003 * 118.91373 * 180.24826 * 15 14 13 30 30 H 1.08005 * 124.30378 * 179.97438 * 19 18 17 31 31 H 1.07998 * 122.59646 * 180.02562 * 20 19 18 32 32 H 1.08998 * 109.49353 * 56.86312 * 22 12 11 33 33 H 1.09005 * 109.49314 * 176.94053 * 22 12 11 34 34 H 1.09002 * 109.63172 * 248.49866 * 23 9 7 35 35 H 1.09005 * 109.62782 * 9.08030 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0548 -1.2225 0.2741 9 7 1.3703 -2.3624 -0.3457 10 6 1.8308 -3.6609 0.1689 11 6 2.0029 -4.6199 -1.0139 12 7 0.7556 -4.6657 -1.7886 13 6 0.8160 -5.6403 -2.7683 14 7 1.9044 -6.3811 -2.9143 15 6 1.9748 -7.3178 -3.8429 16 7 0.9840 -7.5582 -4.6701 17 6 -0.1557 -6.8585 -4.6042 18 16 -1.6292 -6.9496 -5.5579 19 6 -2.3798 -5.6542 -4.6450 20 6 -1.5754 -5.2000 -3.7037 21 6 -0.2841 -5.8579 -3.6369 22 6 0.4408 -3.3537 -2.3696 23 6 0.2047 -2.3429 -1.2424 24 1 -0.4850 0.8400 -0.0004 25 1 1.0918 -4.0632 0.8618 26 1 2.7854 -3.5347 0.6798 27 1 2.2370 -5.6175 -0.6423 28 1 2.8144 -4.2691 -1.6515 29 1 2.8786 -7.9031 -3.9268 30 1 -3.3742 -5.2757 -4.8306 31 1 -1.8564 -4.4008 -3.0339 32 1 1.2740 -3.0206 -2.9884 33 1 -0.4580 -3.4330 -2.9812 34 1 -0.6907 -2.6184 -0.6852 35 1 0.0842 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048444140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:32 Heat of formation + Delta-G solvation = 115.629061 kcal Electronic energy + Delta-G solvation = -20772.825659 eV Core-core repulsion = 17705.781845 eV Total energy + Delta-G solvation = -3067.043813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 5.51 seconds Orbital eigenvalues (eV) -41.17631 -38.31493 -36.18202 -34.98416 -32.60141 -31.34901 -30.20589 -29.57327 -26.75981 -25.08134 -23.94933 -22.63411 -22.53535 -21.20343 -19.45872 -18.57311 -17.76665 -16.68827 -16.03141 -15.39961 -15.23639 -14.90012 -14.52394 -14.44822 -14.10088 -13.70518 -13.51359 -13.23434 -12.95660 -12.67250 -12.23189 -11.71236 -11.31813 -11.10066 -11.03227 -10.91987 -10.82295 -10.63414 -10.53593 -10.26373 -9.89420 -9.84888 -9.35622 -9.17823 -8.64318 -8.48045 -7.94200 -6.83085 -5.89861 -3.31518 0.46453 1.01435 1.10473 1.78912 2.16160 3.32404 3.40034 3.40858 3.50782 3.81942 4.20124 4.41079 4.47610 4.55359 4.85129 5.08367 5.22398 5.28609 5.49122 5.65611 5.70763 5.81727 5.93696 6.00495 6.05107 6.08511 6.19970 6.25294 6.45371 6.65298 6.84955 7.05784 7.25754 7.29922 7.43895 7.70166 8.15057 8.30367 9.08404 9.70905 10.28083 11.19690 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.004395 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.034332 B = 6369.077430 C = 7055.605475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.144 3.856 11 C 0.053 3.947 12 N -0.459 5.459 13 C 0.422 3.578 14 N -0.568 5.568 15 C 0.339 3.661 16 N -0.527 5.527 17 C 0.105 3.895 18 S 0.142 5.858 19 C -0.212 4.212 20 C -0.082 4.082 21 C -0.200 4.200 22 C 0.032 3.968 23 C 0.176 3.824 24 H 0.255 0.745 25 H 0.028 0.972 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.200 0.800 30 H 0.176 0.824 31 H 0.159 0.841 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 -11.990 -9.226 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.017 3.983 11 C -0.075 4.075 12 N -0.174 5.174 13 C 0.173 3.827 14 N -0.291 5.291 15 C 0.046 3.954 16 N -0.247 5.247 17 C -0.145 4.145 18 S 0.399 5.601 19 C -0.346 4.346 20 C -0.112 4.112 21 C -0.217 4.217 22 C -0.094 4.094 23 C 0.050 3.950 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.216 0.784 30 H 0.193 0.807 31 H 0.176 0.824 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.963 -13.255 -10.119 16.937 hybrid contribution 0.652 2.200 0.868 2.453 sum -2.311 -11.055 -9.251 14.600 Atomic orbital electron populations 1.70004 1.05233 1.25717 1.53900 1.25032 0.95341 0.98457 1.00688 0.86254 0.79147 0.83451 0.77733 1.21409 1.21663 1.20361 1.19226 0.92758 0.84562 1.41860 0.91318 1.44138 1.34021 1.01505 1.52152 1.21104 0.98542 0.86204 0.92459 1.22694 0.87443 1.01044 0.96342 1.58612 1.34485 1.06004 1.18319 1.20350 0.86427 0.91173 0.84786 1.68365 1.24548 1.11329 1.24879 1.24714 0.95753 0.90181 0.84796 1.68025 0.99933 1.28452 1.28283 1.23742 0.98552 0.94894 0.97310 1.84080 1.03634 1.36851 1.35503 1.25158 1.04732 1.02852 1.01878 1.20883 0.90879 1.00446 0.99018 1.20203 0.97412 1.02568 1.01527 1.23432 1.00601 0.85669 0.99696 1.20960 0.89480 0.96487 0.88092 0.93457 0.95401 0.91637 0.90265 0.92984 0.78369 0.80686 0.82364 0.93617 0.90219 0.94959 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.12 11.15 55.49 0.62 -24.50 16 2 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 3 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.25 -6.74 9.63 -15.06 -0.15 -6.88 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.60 -14.36 3.04 -172.02 -0.52 -14.88 16 10 C 0.14 2.94 6.69 -3.60 -0.02 2.92 16 11 C 0.05 0.95 4.83 -3.70 -0.02 0.93 16 12 N -0.46 -8.28 4.63 -172.20 -0.80 -9.07 16 13 C 0.42 7.17 6.46 -154.57 -1.00 6.18 16 14 N -0.57 -9.19 8.78 -13.44 -0.12 -9.31 16 15 C 0.34 4.74 12.27 -92.34 -1.13 3.61 16 16 N -0.53 -7.94 10.47 -13.31 -0.14 -8.08 16 17 C 0.10 1.57 7.70 -16.08 -0.12 1.45 16 18 S 0.14 1.64 23.23 -107.50 -2.50 -0.86 16 19 C -0.21 -2.29 11.02 28.83 0.32 -1.97 16 20 C -0.08 -1.09 8.90 -38.78 -0.34 -1.43 16 21 C -0.20 -3.13 5.73 -105.24 -0.60 -3.73 16 22 C 0.03 0.59 5.33 -3.70 -0.02 0.57 16 23 C 0.18 3.96 5.42 -3.61 -0.02 3.94 16 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 27 H 0.08 1.34 7.67 -51.93 -0.40 0.94 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.20 1.95 8.06 -52.48 -0.42 1.53 16 30 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 31 H 0.16 2.02 6.50 -52.49 -0.34 1.68 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.29 4.50 -51.93 -0.23 1.06 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 2.45 6.12 -51.93 -0.32 2.13 16 LS Contribution 298.74 15.07 4.50 4.50 Total: -1.00 -29.73 298.74 -10.97 -40.70 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.79 Total: -0.10 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -3.20 Total: 5.59 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.96 Total: -65.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.50 Total: -0.86 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.73 -10.97 -40.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048444140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.332 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.51 seconds