Wall clock time and date at job start Tue Mar 31 2020 06:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48496 * 109.46837 * 269.99591 * 3 2 1 5 5 H 1.48503 * 109.46972 * 29.99912 * 3 2 1 6 6 H 1.48492 * 109.46978 * 149.99896 * 3 2 1 7 7 C 1.38819 * 119.99597 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99423 * 197.00431 * 7 2 1 9 9 N 1.36938 * 120.00008 * 16.99995 * 7 2 1 10 10 C 1.47072 * 120.88000 * 206.57915 * 9 7 2 11 11 C 1.53243 * 108.52225 * 231.21077 * 10 9 7 12 12 N 1.46900 * 109.33900 * 306.17225 * 11 10 9 13 13 C 1.38326 * 111.00131 * 187.25500 * 12 11 10 14 14 N 1.32472 * 120.52882 * 359.71472 * 13 12 11 15 15 C 1.32079 * 121.18806 * 179.80054 * 14 13 12 16 16 N 1.31289 * 122.18185 * 0.47512 * 15 14 13 17 17 C 1.33900 * 121.04201 * 359.77289 * 16 15 14 18 18 S 1.75749 * 131.28679 * 179.97438 * 17 16 15 19 19 C 1.75350 * 92.18490 * 180.02562 * 18 17 16 20 20 C 1.31891 * 111.39789 * 0.02562 * 19 18 17 21 21 C 1.39764 * 119.10073 * 0.02562 * 17 16 15 22 22 C 1.46899 * 111.26960 * 63.09979 * 12 11 10 23 23 C 1.47076 * 120.88091 * 26.60545 * 9 7 2 24 24 H 0.96999 * 120.00043 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.63258 * 111.50209 * 10 9 7 26 26 H 1.08999 * 109.63192 * 350.91817 * 10 9 7 27 27 H 1.08998 * 109.49602 * 186.21272 * 11 10 9 28 28 H 1.09004 * 109.49266 * 66.12911 * 11 10 9 29 29 H 1.08003 * 118.91373 * 180.24826 * 15 14 13 30 30 H 1.08005 * 124.30378 * 179.97438 * 19 18 17 31 31 H 1.07998 * 122.59646 * 180.02562 * 20 19 18 32 32 H 1.08998 * 109.49353 * 56.86312 * 22 12 11 33 33 H 1.09005 * 109.49314 * 176.94053 * 22 12 11 34 34 H 1.09002 * 109.63172 * 248.49866 * 23 9 7 35 35 H 1.09005 * 109.62782 * 9.08030 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0548 -1.2225 0.2741 9 7 1.3703 -2.3624 -0.3457 10 6 1.8308 -3.6609 0.1689 11 6 2.0029 -4.6199 -1.0139 12 7 0.7556 -4.6657 -1.7886 13 6 0.8160 -5.6403 -2.7683 14 7 1.9044 -6.3811 -2.9143 15 6 1.9748 -7.3178 -3.8429 16 7 0.9840 -7.5582 -4.6701 17 6 -0.1557 -6.8585 -4.6042 18 16 -1.6292 -6.9496 -5.5579 19 6 -2.3798 -5.6542 -4.6450 20 6 -1.5754 -5.2000 -3.7037 21 6 -0.2841 -5.8579 -3.6369 22 6 0.4408 -3.3537 -2.3696 23 6 0.2047 -2.3429 -1.2424 24 1 -0.4850 0.8400 -0.0004 25 1 1.0918 -4.0632 0.8618 26 1 2.7854 -3.5347 0.6798 27 1 2.2370 -5.6175 -0.6423 28 1 2.8144 -4.2691 -1.6515 29 1 2.8786 -7.9031 -3.9268 30 1 -3.3742 -5.2757 -4.8306 31 1 -1.8564 -4.4008 -3.0339 32 1 1.2740 -3.0206 -2.9884 33 1 -0.4580 -3.4330 -2.9812 34 1 -0.6907 -2.6184 -0.6852 35 1 0.0842 -1.3452 -1.6646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048444140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:31 Heat of formation + Delta-G solvation = 98.329766 kcal Electronic energy + Delta-G solvation = -20773.575812 eV Core-core repulsion = 17705.781845 eV Total energy + Delta-G solvation = -3067.793967 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -42.34997 -39.77506 -37.21551 -36.64364 -34.07267 -32.97692 -31.82490 -30.80188 -28.42448 -26.28701 -25.52651 -24.10182 -24.01614 -22.26780 -21.10384 -19.76054 -19.12831 -18.38988 -17.09266 -16.85240 -16.51843 -16.47444 -15.81013 -15.70577 -15.55924 -15.25816 -15.05973 -14.81118 -14.46224 -13.79241 -13.35593 -13.24691 -13.11438 -12.68069 -12.56338 -12.28337 -12.23753 -12.19579 -12.01461 -11.88347 -11.69823 -11.59351 -10.65952 -10.48431 -10.34338 -9.63832 -9.04514 -8.77002 -7.91611 -5.35864 -0.59475 -0.18689 0.11844 0.83484 1.16284 1.47819 1.49515 1.57890 2.22320 2.49895 2.65449 3.15970 3.24952 3.31975 3.51514 3.56472 3.71168 4.02978 4.13423 4.18704 4.38635 4.40370 4.53985 4.56235 4.72473 4.85190 4.95391 5.01259 5.08224 5.11553 5.25826 5.44913 5.56432 5.63836 5.92748 5.95665 6.33164 7.00748 7.09429 7.77094 8.31256 9.16306 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.004395 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.034332 B = 6369.077430 C = 7055.605475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.267 4.267 8 H 0.069 0.931 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.069 3.931 12 N -0.467 5.467 13 C 0.401 3.599 14 N -0.580 5.580 15 C 0.332 3.668 16 N -0.532 5.532 17 C 0.076 3.924 18 S 0.190 5.810 19 C -0.186 4.186 20 C -0.112 4.112 21 C -0.210 4.210 22 C 0.051 3.949 23 C 0.186 3.814 24 H 0.253 0.747 25 H 0.022 0.978 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.041 0.959 29 H 0.236 0.764 30 H 0.213 0.787 31 H 0.158 0.842 32 H 0.032 0.968 33 H 0.104 0.896 34 H 0.013 0.987 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -13.070 -10.710 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.397 4.397 8 H 0.087 0.913 9 N -0.337 5.337 10 C 0.018 3.982 11 C -0.059 4.059 12 N -0.182 5.182 13 C 0.153 3.847 14 N -0.303 5.303 15 C 0.039 3.961 16 N -0.252 5.252 17 C -0.174 4.174 18 S 0.448 5.552 19 C -0.320 4.320 20 C -0.141 4.141 21 C -0.227 4.227 22 C -0.075 4.075 23 C 0.060 3.940 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.252 0.748 30 H 0.230 0.770 31 H 0.176 0.824 32 H 0.051 0.949 33 H 0.122 0.878 34 H 0.031 0.969 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.322 -14.384 -11.623 18.789 hybrid contribution 0.692 2.407 1.239 2.794 sum -2.630 -11.977 -10.384 16.068 Atomic orbital electron populations 1.70142 1.06469 1.26080 1.55110 1.25730 0.96073 1.01253 1.00918 0.85280 0.78115 0.79580 0.77546 1.21209 1.22030 1.19513 1.19524 0.93013 0.85736 1.41413 0.91343 1.44399 1.34247 1.02172 1.52897 1.21187 0.98408 0.85221 0.93431 1.22432 0.87442 1.00814 0.95178 1.58569 1.34552 1.05812 1.19302 1.20365 0.87559 0.91309 0.85498 1.68341 1.24537 1.11810 1.25623 1.25425 0.96768 0.89913 0.83953 1.68113 1.00239 1.28432 1.28381 1.24301 0.99796 0.95053 0.98254 1.83984 1.01146 1.36155 1.33937 1.25652 1.05521 1.01112 0.99677 1.20885 0.90738 1.01722 1.00792 1.20429 0.97908 1.03046 1.01305 1.23081 1.01155 0.85362 0.97905 1.20693 0.88447 0.96220 0.88663 0.93823 0.95988 0.91054 0.88808 0.94022 0.74843 0.76997 0.82438 0.94940 0.87849 0.96864 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.04 11.15 21.65 0.24 -52.80 16 2 C -0.04 -2.38 4.94 84.86 0.42 -1.96 16 3 Si 0.97 43.68 29.59 68.60 2.03 45.71 16 4 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.27 -14.36 9.63 84.03 0.81 -13.55 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 9 N -0.61 -30.29 3.04 -698.15 -2.12 -32.41 16 10 C 0.14 5.95 6.69 86.35 0.58 6.53 16 11 C 0.07 2.51 4.83 86.38 0.42 2.93 16 12 N -0.47 -16.82 4.63 -698.71 -3.24 -20.06 16 13 C 0.40 13.41 6.46 133.95 0.86 14.27 16 14 N -0.58 -18.21 8.78 -196.43 -1.73 -19.94 16 15 C 0.33 8.75 12.27 180.95 2.22 10.97 16 16 N -0.53 -15.08 10.47 -196.04 -2.05 -17.14 16 17 C 0.08 2.12 7.70 84.75 0.65 2.78 16 18 S 0.19 3.79 23.23 -56.49 -1.31 2.48 16 19 C -0.19 -3.38 11.02 66.99 0.74 -2.64 16 20 C -0.11 -2.75 8.90 23.19 0.21 -2.54 16 21 C -0.21 -6.29 5.73 -20.26 -0.12 -6.41 16 22 C 0.05 1.93 5.33 86.38 0.46 2.39 16 23 C 0.19 8.63 5.42 86.35 0.47 9.10 16 24 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 25 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 2.82 7.95 -2.39 -0.02 2.80 16 27 H 0.09 3.11 7.67 -2.39 -0.02 3.09 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.24 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.21 2.21 8.06 -2.91 -0.02 2.18 16 31 H 0.16 3.85 6.50 -2.91 -0.02 3.83 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 3.35 4.50 -2.38 -0.01 3.34 16 34 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 3.70 6.12 -2.38 -0.01 3.68 16 Total: -1.00 -64.57 298.74 0.66 -63.91 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.12 Total: 8.37 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 7.72 Total: 21.87 kcal Atomic # 7 Polarization: -133.45 SS G_CDS: -8.89 Total: -142.34 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.31 Total: 2.48 kcal Total: -64.57 0.66 -63.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048444140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.239 kcal (2) G-P(sol) polarization free energy of solvation -64.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds