Wall clock time and date at job start Tue Mar 31 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99507 * 2 1 4 4 H 1.48507 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47564 * 299.99733 * 3 2 1 6 6 H 1.48500 * 109.47515 * 60.00055 * 3 2 1 7 7 C 1.38808 * 120.00654 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00181 * 201.02618 * 7 2 1 9 9 N 1.36938 * 119.99764 * 21.02726 * 7 2 1 10 10 C 1.46506 * 119.99978 * 37.24479 * 9 7 2 11 11 N 1.46503 * 109.47371 * 89.99736 * 10 9 7 12 12 N 1.40161 * 126.20864 * 270.00563 * 11 10 9 13 13 C 1.31296 * 107.87325 * 180.02562 * 12 11 10 14 14 C 1.41796 * 132.00506 * 180.02562 * 13 12 11 15 15 C 1.35528 * 119.31468 * 179.97438 * 14 13 12 16 16 C 1.40979 * 119.84926 * 359.97438 * 15 14 13 17 17 C 1.34486 * 120.59090 * 0.02562 * 16 15 14 18 18 N 1.37388 * 120.68687 * 359.97338 * 17 16 15 19 19 C 1.34823 * 131.78287 * 179.97438 * 18 17 16 20 20 S 1.71199 * 126.05558 * 0.02825 * 19 18 17 21 21 C 1.46496 * 120.00310 * 217.23948 * 9 7 2 22 22 C 1.53001 * 117.49474 * 14.29150 * 21 9 7 23 23 C 1.53000 * 117.50305 * 305.63206 * 21 9 7 24 24 H 0.96996 * 120.00453 * 354.88123 * 1 2 3 25 25 H 1.09001 * 109.47012 * 329.99712 * 10 9 7 26 26 H 1.08998 * 109.47135 * 210.00128 * 10 9 7 27 27 H 1.08002 * 120.34127 * 0.24974 * 14 13 12 28 28 H 1.08001 * 120.07243 * 179.97438 * 15 14 13 29 29 H 1.08001 * 119.70729 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.65246 * 180.02562 * 17 16 15 31 31 H 1.09002 * 115.55330 * 159.95312 * 21 9 7 32 32 H 1.08993 * 117.50163 * 359.97438 * 22 21 9 33 33 H 1.09004 * 117.49584 * 145.01980 * 22 21 9 34 34 H 1.09001 * 117.49985 * 214.97836 * 23 21 9 35 35 H 1.08999 * 117.49315 * 359.96908 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0364 -1.2329 0.3361 9 7 1.3941 -2.3487 -0.4245 10 6 0.4575 -2.3029 -1.5501 11 7 1.1868 -2.5225 -2.8016 12 7 1.7692 -1.5328 -3.6051 13 6 2.3269 -2.1264 -4.6349 14 6 3.0461 -1.6200 -5.7471 15 6 3.5189 -2.4821 -6.6798 16 6 3.2924 -3.8660 -6.5351 17 6 2.6096 -4.3409 -5.4782 18 7 2.1200 -3.4879 -4.5190 19 6 1.4186 -3.7133 -3.3899 20 16 0.9130 -5.2411 -2.8058 21 6 1.6715 -3.6212 0.2462 22 6 2.3799 -3.5658 1.6013 23 6 3.1343 -4.0546 0.3623 24 1 -0.4850 0.8366 0.0749 25 1 -0.0284 -1.3276 -1.5790 26 1 -0.2962 -3.0807 -1.4274 27 1 3.2192 -0.5587 -5.8475 28 1 4.0679 -2.1097 -7.5321 29 1 3.6698 -4.5509 -7.2800 30 1 2.4453 -5.4040 -5.3822 31 1 0.9253 -4.4022 0.1001 32 1 2.6399 -2.5826 1.9934 33 1 2.1000 -4.3106 2.3463 34 1 3.3504 -5.1207 0.2927 35 1 3.8902 -3.3930 -0.0609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050898606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:58 Heat of formation + Delta-G solvation = 178.222907 kcal Electronic energy + Delta-G solvation = -21031.875241 eV Core-core repulsion = 17967.545701 eV Total energy + Delta-G solvation = -3064.329540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.70805 -38.07628 -37.02609 -34.17128 -33.70448 -32.37439 -30.39090 -29.43666 -26.71514 -24.63623 -23.51810 -22.88311 -22.36286 -21.42955 -20.10288 -18.56030 -17.51873 -16.98621 -16.53319 -16.15332 -15.66978 -15.40210 -14.90228 -14.65530 -14.40650 -13.94974 -13.35271 -12.76678 -12.29725 -12.13803 -11.86573 -11.50593 -11.45657 -11.33402 -11.13296 -11.02121 -10.94000 -10.68314 -10.64323 -10.25052 -10.00207 -9.81897 -9.37856 -8.78816 -8.60207 -7.22027 -6.99781 -6.90426 -6.30221 -3.80972 0.46945 1.29963 1.76544 2.06933 2.84447 2.95000 3.18954 3.25866 3.28118 3.28768 4.12690 4.18766 4.56734 4.73943 4.83686 4.85488 4.91036 5.04494 5.12413 5.31677 5.76602 5.84509 5.90813 5.99567 6.01861 6.07719 6.15790 6.30374 6.46243 6.58647 6.64399 6.85503 6.89993 7.07515 7.10706 7.49587 7.70472 8.07811 8.67623 9.29491 9.81530 10.75446 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.007187 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.608852 B = 3894.809728 C = 5042.484790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.033 3.967 3 Si 0.912 3.088 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.279 4.279 8 H 0.071 0.929 9 N -0.505 5.505 10 C 0.340 3.660 11 N -0.312 5.312 12 N -0.260 5.260 13 C 0.247 3.753 14 C -0.103 4.103 15 C -0.065 4.065 16 C -0.173 4.173 17 C 0.117 3.883 18 N -0.424 5.424 19 C 0.433 3.567 20 S -0.625 6.625 21 C 0.118 3.882 22 C -0.188 4.188 23 C -0.211 4.211 24 H 0.268 0.732 25 H 0.145 0.855 26 H 0.097 0.903 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.176 0.824 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.791 -3.051 -12.092 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.170 4.170 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.409 4.409 8 H 0.089 0.911 9 N -0.216 5.216 10 C 0.135 3.865 11 N -0.108 5.108 12 N -0.085 5.085 13 C -0.019 4.019 14 C -0.125 4.125 15 C -0.089 4.089 16 C -0.197 4.197 17 C -0.003 4.003 18 N -0.115 5.115 19 C 0.071 3.929 20 S -0.497 6.497 21 C 0.011 3.989 22 C -0.226 4.226 23 C -0.251 4.251 24 H 0.078 0.922 25 H 0.161 0.839 26 H 0.115 0.885 27 H 0.173 0.827 28 H 0.164 0.836 29 H 0.172 0.828 30 H 0.193 0.807 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.907 -2.785 -10.838 12.219 hybrid contribution 1.058 0.937 -0.597 1.534 sum 5.965 -1.848 -11.435 13.029 Atomic orbital electron populations 1.69766 1.05893 1.27469 1.48542 1.25286 0.95213 0.99469 0.97072 0.86090 0.79795 0.82353 0.77754 1.19756 1.20577 1.21021 1.19108 0.95497 0.84659 1.41632 0.91129 1.44059 1.48450 1.03754 1.25376 1.22802 0.87750 1.05685 0.70233 1.54305 1.38128 0.99645 1.18674 1.78137 1.14700 1.14479 1.01226 1.22059 1.01151 0.80957 0.97699 1.20297 0.99476 1.01624 0.91107 1.21132 0.96875 0.92674 0.98257 1.20788 1.03456 0.96521 0.98934 1.21865 0.94452 0.96970 0.87055 1.43690 1.40914 1.08105 1.18778 1.23981 0.89322 0.95648 0.83909 1.92969 1.71718 1.07654 1.77312 1.21470 0.93011 0.89341 0.95109 1.23139 1.05858 1.02278 0.91336 1.23214 0.98582 0.99675 1.03668 0.92207 0.83851 0.88541 0.82681 0.83648 0.82816 0.80720 0.87213 0.88204 0.90141 0.90195 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.15 11.42 55.49 0.63 -22.52 16 2 C 0.03 0.85 4.97 -17.43 -0.09 0.76 16 3 Si 0.91 20.59 29.61 -169.99 -5.03 15.56 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.28 -7.21 8.06 -15.06 -0.12 -7.33 16 8 H 0.07 1.87 7.18 -52.49 -0.38 1.49 16 9 N -0.51 -12.28 3.03 -169.34 -0.51 -12.80 16 10 C 0.34 8.02 6.42 -63.74 -0.41 7.61 16 11 N -0.31 -6.89 3.86 -65.20 -0.25 -7.14 16 12 N -0.26 -5.48 12.63 31.35 0.40 -5.08 16 13 C 0.25 4.24 7.87 -155.70 -1.23 3.02 16 14 C -0.10 -1.23 10.12 -39.19 -0.40 -1.63 16 15 C -0.06 -0.56 10.06 -39.51 -0.40 -0.96 16 16 C -0.17 -1.55 9.97 -39.87 -0.40 -1.95 16 17 C 0.12 1.49 10.72 -16.39 -0.18 1.31 16 18 N -0.42 -7.33 2.92 -63.37 -0.19 -7.52 16 19 C 0.43 9.01 7.91 -86.83 -0.69 8.32 16 20 S -0.63 -13.77 30.15 -107.50 -3.24 -17.01 16 21 C 0.12 2.63 6.61 -67.93 -0.45 2.18 16 22 C -0.19 -3.81 9.81 -26.69 -0.26 -4.07 16 23 C -0.21 -4.37 10.08 -26.69 -0.27 -4.64 16 24 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 25 H 0.14 3.67 5.48 -51.93 -0.28 3.38 16 26 H 0.10 2.24 7.55 -51.93 -0.39 1.85 16 27 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.18 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.11 2.45 8.10 -51.93 -0.42 2.03 16 32 H 0.10 2.17 6.95 -51.93 -0.36 1.80 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.08 1.75 7.99 -51.93 -0.41 1.34 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -30.72 317.62 -12.21 -42.92 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -3.92 Total: 6.17 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -4.88 Total: 2.63 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.08 Total: -55.06 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Atomic # 16 Polarization: -13.77 SS G_CDS: -3.24 Total: -17.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.72 -12.21 -42.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.145 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds