Wall clock time and date at job start Tue Mar 31 2020 06:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99507 * 2 1 4 4 H 1.48507 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47564 * 299.99733 * 3 2 1 6 6 H 1.48500 * 109.47515 * 60.00055 * 3 2 1 7 7 C 1.38808 * 120.00654 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00181 * 201.02618 * 7 2 1 9 9 N 1.36938 * 119.99764 * 21.02726 * 7 2 1 10 10 C 1.46506 * 119.99978 * 37.24479 * 9 7 2 11 11 N 1.46503 * 109.47371 * 89.99736 * 10 9 7 12 12 N 1.40161 * 126.20864 * 270.00563 * 11 10 9 13 13 C 1.31296 * 107.87325 * 180.02562 * 12 11 10 14 14 C 1.41796 * 132.00506 * 180.02562 * 13 12 11 15 15 C 1.35528 * 119.31468 * 179.97438 * 14 13 12 16 16 C 1.40979 * 119.84926 * 359.97438 * 15 14 13 17 17 C 1.34486 * 120.59090 * 0.02562 * 16 15 14 18 18 N 1.37388 * 120.68687 * 359.97338 * 17 16 15 19 19 C 1.34823 * 131.78287 * 179.97438 * 18 17 16 20 20 S 1.71199 * 126.05558 * 0.02825 * 19 18 17 21 21 C 1.46496 * 120.00310 * 217.23948 * 9 7 2 22 22 C 1.53001 * 117.49474 * 14.29150 * 21 9 7 23 23 C 1.53000 * 117.50305 * 305.63206 * 21 9 7 24 24 H 0.96996 * 120.00453 * 354.88123 * 1 2 3 25 25 H 1.09001 * 109.47012 * 329.99712 * 10 9 7 26 26 H 1.08998 * 109.47135 * 210.00128 * 10 9 7 27 27 H 1.08002 * 120.34127 * 0.24974 * 14 13 12 28 28 H 1.08001 * 120.07243 * 179.97438 * 15 14 13 29 29 H 1.08001 * 119.70729 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.65246 * 180.02562 * 17 16 15 31 31 H 1.09002 * 115.55330 * 159.95312 * 21 9 7 32 32 H 1.08993 * 117.50163 * 359.97438 * 22 21 9 33 33 H 1.09004 * 117.49584 * 145.01980 * 22 21 9 34 34 H 1.09001 * 117.49985 * 214.97836 * 23 21 9 35 35 H 1.08999 * 117.49315 * 359.96908 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0364 -1.2329 0.3361 9 7 1.3941 -2.3487 -0.4245 10 6 0.4575 -2.3029 -1.5501 11 7 1.1868 -2.5225 -2.8016 12 7 1.7692 -1.5328 -3.6051 13 6 2.3269 -2.1264 -4.6349 14 6 3.0461 -1.6200 -5.7471 15 6 3.5189 -2.4821 -6.6798 16 6 3.2924 -3.8660 -6.5351 17 6 2.6096 -4.3409 -5.4782 18 7 2.1200 -3.4879 -4.5190 19 6 1.4186 -3.7133 -3.3899 20 16 0.9130 -5.2411 -2.8058 21 6 1.6715 -3.6212 0.2462 22 6 2.3799 -3.5658 1.6013 23 6 3.1343 -4.0546 0.3623 24 1 -0.4850 0.8366 0.0749 25 1 -0.0284 -1.3276 -1.5790 26 1 -0.2962 -3.0807 -1.4274 27 1 3.2192 -0.5587 -5.8475 28 1 4.0679 -2.1097 -7.5321 29 1 3.6698 -4.5509 -7.2800 30 1 2.4453 -5.4040 -5.3822 31 1 0.9253 -4.4022 0.1001 32 1 2.6399 -2.5826 1.9934 33 1 2.1000 -4.3106 2.3463 34 1 3.3504 -5.1207 0.2927 35 1 3.8902 -3.3930 -0.0609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050898606.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:57 Heat of formation + Delta-G solvation = 162.803805 kcal Electronic energy + Delta-G solvation = -21032.543864 eV Core-core repulsion = 17967.545701 eV Total energy + Delta-G solvation = -3064.998163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.09898 -39.50642 -38.55961 -35.75426 -35.06400 -33.99808 -32.08156 -30.61587 -28.37436 -26.35633 -24.74231 -24.11938 -23.97414 -23.10029 -21.90473 -19.88284 -19.04419 -18.44857 -17.93670 -17.66371 -17.32627 -16.74534 -16.46552 -15.97474 -15.71467 -15.68047 -15.01529 -13.99220 -13.71408 -13.39787 -13.25433 -13.23110 -13.00536 -12.82617 -12.77563 -12.68620 -12.53227 -12.34029 -12.29806 -12.05369 -11.71140 -11.25127 -11.01712 -10.67259 -9.83665 -8.98606 -8.80418 -8.48605 -8.21449 -5.78220 -0.64964 0.06580 0.28593 0.71060 1.25206 1.38840 1.40692 1.49225 1.58330 2.28740 2.30167 2.87652 2.98264 3.13818 3.31472 3.48451 3.73060 3.91133 4.12755 4.17607 4.20790 4.36138 4.37519 4.56407 4.79542 4.79996 4.88864 4.92232 4.98455 5.14534 5.16581 5.28361 5.40225 5.43315 5.48762 5.69387 6.15247 6.26255 6.76510 7.40755 7.93332 8.83583 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014997 B = 0.007187 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.608852 B = 3894.809728 C = 5042.484790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.285 4.285 8 H 0.057 0.943 9 N -0.522 5.522 10 C 0.361 3.639 11 N -0.325 5.325 12 N -0.320 5.320 13 C 0.256 3.744 14 C -0.132 4.132 15 C -0.022 4.022 16 C -0.128 4.128 17 C 0.067 3.933 18 N -0.420 5.420 19 C 0.428 3.572 20 S -0.669 6.669 21 C 0.099 3.901 22 C -0.173 4.173 23 C -0.198 4.198 24 H 0.267 0.733 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.177 0.823 28 H 0.205 0.795 29 H 0.209 0.791 30 H 0.181 0.819 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.289 -3.262 -15.524 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.206 4.206 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.415 4.415 8 H 0.074 0.926 9 N -0.236 5.236 10 C 0.155 3.845 11 N -0.118 5.118 12 N -0.146 5.146 13 C -0.008 4.008 14 C -0.154 4.154 15 C -0.047 4.047 16 C -0.150 4.150 17 C -0.051 4.051 18 N -0.109 5.109 19 C 0.063 3.937 20 S -0.542 6.542 21 C -0.008 4.008 22 C -0.211 4.211 23 C -0.238 4.238 24 H 0.077 0.923 25 H 0.139 0.861 26 H 0.107 0.893 27 H 0.194 0.806 28 H 0.222 0.778 29 H 0.226 0.774 30 H 0.198 0.802 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.442 -3.004 -14.328 16.422 hybrid contribution 0.443 0.910 0.027 1.012 sum 7.884 -2.095 -14.301 16.464 Atomic orbital electron populations 1.69862 1.06839 1.27841 1.50017 1.25878 0.95827 1.01733 0.97135 0.85259 0.78553 0.79254 0.77614 1.19811 1.20747 1.20388 1.19045 0.94815 0.85586 1.42054 0.92568 1.44017 1.48954 1.04000 1.26597 1.22108 0.87464 1.03973 0.70930 1.53300 1.38714 1.00693 1.19139 1.78075 1.18427 1.14604 1.03526 1.22964 0.99525 0.80661 0.97617 1.20815 1.00562 1.03642 0.90423 1.21904 0.93239 0.91777 0.97735 1.21602 0.98633 0.97715 0.97085 1.22479 0.97423 0.97220 0.87948 1.43727 1.39946 1.08961 1.18253 1.23556 0.90419 0.94350 0.85338 1.92890 1.73811 1.08650 1.78842 1.21517 0.93742 0.88837 0.96704 1.23137 1.04531 1.02195 0.91232 1.23097 0.97026 1.00082 1.03553 0.92320 0.86146 0.89349 0.80557 0.77777 0.77414 0.80229 0.87769 0.89819 0.87243 0.88526 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.85 11.42 21.65 0.25 -49.60 16 2 C -0.01 -0.28 4.97 84.86 0.42 0.14 16 3 Si 0.97 43.45 29.61 68.60 2.03 45.48 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.29 -15.38 8.06 84.03 0.68 -14.71 16 8 H 0.06 3.12 7.18 -2.91 -0.02 3.10 16 9 N -0.52 -26.71 3.03 -689.68 -2.09 -28.80 16 10 C 0.36 18.12 6.42 170.96 1.10 19.22 16 11 N -0.32 -15.05 3.86 -360.20 -1.39 -16.44 16 12 N -0.32 -13.83 12.63 -54.74 -0.69 -14.52 16 13 C 0.26 8.53 7.87 134.33 1.06 9.59 16 14 C -0.13 -2.65 10.12 22.52 0.23 -2.42 16 15 C -0.02 -0.23 10.06 22.31 0.22 -0.01 16 16 C -0.13 -1.47 9.97 22.08 0.22 -1.25 16 17 C 0.07 1.52 10.72 82.96 0.89 2.41 16 18 N -0.42 -14.20 2.92 -354.40 -1.04 -15.23 16 19 C 0.43 18.34 7.91 179.02 1.42 19.76 16 20 S -0.67 -30.48 30.15 -56.49 -1.70 -32.18 16 21 C 0.10 4.58 6.61 44.99 0.30 4.88 16 22 C -0.17 -7.09 9.81 30.62 0.30 -6.79 16 23 C -0.20 -8.31 10.08 30.62 0.31 -8.00 16 24 H 0.27 14.01 8.32 -92.71 -0.77 13.24 16 25 H 0.12 6.61 5.48 -2.39 -0.01 6.59 16 26 H 0.09 4.44 7.55 -2.39 -0.02 4.42 16 27 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.21 -0.01 8.06 -2.91 -0.02 -0.03 16 29 H 0.21 0.33 8.06 -2.91 -0.02 0.31 16 30 H 0.18 3.83 8.06 -2.91 -0.02 3.80 16 31 H 0.10 4.88 8.10 -2.39 -0.02 4.86 16 32 H 0.08 3.72 6.95 -2.39 -0.02 3.71 16 33 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 34 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 35 H 0.06 2.75 7.99 -2.39 -0.02 2.73 16 Total: -1.00 -73.86 317.62 3.62 -70.24 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.11 Total: 18.22 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 7.14 Total: 22.83 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -4.96 Total: -124.60 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -30.48 SS G_CDS: -1.70 Total: -32.18 kcal Total: -73.86 3.62 -70.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898606.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.042 kcal (2) G-P(sol) polarization free energy of solvation -73.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds