Wall clock time and date at job start Tue Mar 31 2020 07:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47217 * 2 1 4 4 N 1.46500 * 109.46822 * 180.02562 * 3 2 1 5 5 C 1.36628 * 127.14941 * 86.36617 * 4 3 2 6 6 S 1.76205 * 126.38349 * 0.02562 * 5 4 3 7 7 C 1.76203 * 99.99713 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00108 * 359.97438 * 7 6 5 9 9 C 1.38680 * 119.99834 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99765 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00216 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47271 * 59.99572 * 11 9 7 13 13 H 1.48490 * 109.47502 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47050 * 299.99707 * 11 9 7 15 15 N 1.31648 * 107.22989 * 179.97438 * 5 4 3 16 16 N 1.28521 * 110.01862 * 359.97438 * 15 5 4 17 17 C 1.31499 * 109.92765 * 359.72232 * 16 15 5 18 18 C 1.47757 * 126.43874 * 180.30009 * 17 16 15 19 19 C 1.40053 * 120.93082 * 198.47788 * 18 17 16 20 20 C 1.37905 * 118.98587 * 179.72994 * 19 18 17 21 21 N 1.31955 * 120.90651 * 0.56115 * 20 19 18 22 22 C 1.31966 * 122.07324 * 359.71469 * 21 20 19 23 23 C 1.37896 * 120.90738 * 359.97438 * 22 21 20 24 24 H 1.09008 * 109.46837 * 300.00308 * 1 2 3 25 25 H 1.08996 * 109.46951 * 59.99844 * 1 2 3 26 26 H 1.08996 * 109.47699 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46951 * 120.00156 * 2 1 3 28 28 H 1.08999 * 109.46751 * 239.99848 * 2 1 3 29 29 H 1.08996 * 109.47025 * 299.99466 * 3 2 1 30 30 H 1.08999 * 109.47384 * 60.00235 * 3 2 1 31 31 H 0.97005 * 119.99772 * 180.02562 * 10 9 7 32 32 H 1.08003 * 120.50027 * 359.97438 * 19 18 17 33 33 H 1.08001 * 119.53905 * 180.29828 * 20 19 18 34 34 H 1.07999 * 119.54285 * 180.02562 * 22 21 20 35 35 H 1.08000 * 120.50455 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3297 1.3735 -1.0878 6 16 3.8295 1.2673 -2.7740 7 6 5.4065 1.2164 -3.5583 8 1 6.3069 1.2537 -2.9632 9 6 5.4914 1.1296 -4.9397 10 7 4.3939 1.0846 -5.6650 11 14 7.1632 1.0763 -5.7713 12 1 7.9179 -0.1087 -5.2903 13 1 6.9818 0.9834 -7.2421 14 1 7.9192 2.3115 -5.4424 15 7 5.5676 1.4023 -0.6407 16 7 5.5703 1.4845 0.6418 17 6 4.3351 1.5191 1.0914 18 6 3.9182 1.6179 2.5055 19 6 2.6209 1.2672 2.8998 20 6 2.2764 1.3695 4.2312 21 7 3.1460 1.8008 5.1251 22 6 4.3762 2.1468 4.7958 23 6 4.8077 2.0700 3.4883 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9564 0.8900 31 1 4.4533 1.0235 -6.6313 32 1 1.9025 0.9181 2.1727 33 1 1.2799 1.0968 4.5458 34 1 5.0545 2.4942 5.5610 35 1 5.8158 2.3552 3.2261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058869178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:40 Heat of formation + Delta-G solvation = 100.380098 kcal Electronic energy + Delta-G solvation = -20052.319935 eV Core-core repulsion = 16984.614877 eV Total energy + Delta-G solvation = -3067.705058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -42.18382 -39.94473 -36.18584 -33.35019 -32.76282 -32.29406 -31.32377 -29.31599 -26.78544 -25.79037 -24.11641 -23.66809 -22.28601 -21.45690 -20.72425 -18.14891 -17.47607 -16.46584 -16.17283 -16.05761 -15.61134 -15.05054 -14.99179 -14.74975 -13.92082 -13.78587 -13.70336 -13.43228 -13.06870 -12.43979 -12.37890 -11.76821 -11.54832 -11.46981 -11.19627 -11.17230 -10.98499 -10.75558 -10.55296 -10.28203 -9.98650 -9.78811 -9.61416 -9.43101 -9.28414 -8.97892 -8.69763 -6.86853 -6.54942 -4.29818 0.75941 1.03319 2.30772 2.40139 3.12618 3.18439 3.19377 3.25815 3.40574 3.84058 3.94401 4.23893 4.33522 4.56286 4.68829 4.74493 4.87506 4.89761 4.96445 5.03348 5.06429 5.17871 5.37540 5.45344 5.56978 5.59252 5.73533 5.78944 5.83165 5.93152 6.12023 6.21106 6.39542 6.54044 6.55247 7.19352 7.49692 7.84295 8.29164 8.97243 9.26310 10.53131 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.004475 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.318608 B = 6255.722849 C = 7360.012258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.101 3.899 4 N -0.469 5.469 5 C 0.179 3.821 6 S 0.149 5.851 7 C -0.537 4.537 8 H 0.106 0.894 9 C 0.078 3.922 10 N -0.877 5.877 11 Si 0.934 3.066 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.269 1.269 15 N -0.303 5.303 16 N -0.258 5.258 17 C 0.154 3.846 18 C 0.061 3.939 19 C -0.186 4.186 20 C 0.104 3.896 21 N -0.491 5.491 22 C 0.103 3.897 23 C -0.142 4.142 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.276 0.724 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 0.146 13.645 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C -0.022 4.022 4 N -0.166 5.166 5 C -0.191 4.191 6 S 0.382 5.618 7 C -0.686 4.686 8 H 0.124 0.876 9 C -0.132 4.132 10 N -0.512 5.512 11 Si 0.759 3.241 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.194 1.194 15 N -0.150 5.150 16 N -0.101 5.101 17 C -0.112 4.112 18 C 0.050 3.950 19 C -0.207 4.207 20 C -0.053 4.053 21 N -0.201 5.201 22 C -0.053 4.053 23 C -0.164 4.164 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.480 0.161 13.697 16.111 hybrid contribution 1.020 -0.084 -0.999 1.430 sum -7.460 0.077 12.699 14.728 Atomic orbital electron populations 1.21695 0.94055 1.02559 1.02265 1.21987 0.96907 0.95593 1.04080 1.22122 0.75980 0.99083 1.04982 1.46287 1.07557 1.57664 1.05063 1.28509 0.89189 1.02648 0.98715 1.83432 1.13028 1.85090 0.80245 1.23197 0.92602 1.58778 0.93993 0.87648 1.25071 0.98958 0.93280 0.95892 1.69925 1.27785 1.46314 1.07170 0.85955 0.81222 0.79598 0.77362 1.19366 1.20726 1.19359 1.74853 1.16237 1.22804 1.01086 1.74243 1.16390 1.14693 1.04742 1.22345 0.87716 1.12655 0.88440 1.17819 0.93506 0.95584 0.88041 1.22579 0.96536 1.03064 0.98564 1.22590 0.98968 0.95088 0.88619 1.67636 1.03304 1.10986 1.38187 1.22688 0.92525 0.95500 0.94611 1.22232 1.01270 0.99811 0.93120 0.92566 0.91818 0.91839 0.91296 0.89833 0.88178 0.88646 0.91458 0.83933 0.82537 0.82298 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.15 -1.72 5.64 -26.73 -0.15 -1.87 16 3 C 0.10 1.35 5.14 -4.04 -0.02 1.33 16 4 N -0.47 -8.59 2.83 -114.04 -0.32 -8.91 16 5 C 0.18 4.05 8.06 -87.95 -0.71 3.34 16 6 S 0.15 3.57 21.46 -107.50 -2.31 1.26 16 7 C -0.54 -14.71 9.37 30.90 0.29 -14.42 16 8 H 0.11 2.99 6.92 -52.49 -0.36 2.63 16 9 C 0.08 2.07 5.49 -17.48 -0.10 1.97 16 10 N -0.88 -23.86 13.22 55.48 0.73 -23.12 16 11 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 14 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 15 N -0.30 -7.49 11.03 30.76 0.34 -7.15 16 16 N -0.26 -5.71 12.11 32.57 0.39 -5.31 16 17 C 0.15 2.87 7.73 -153.79 -1.19 1.68 16 18 C 0.06 0.91 5.90 -104.65 -0.62 0.29 16 19 C -0.19 -2.20 8.74 -39.02 -0.34 -2.54 16 20 C 0.10 1.11 11.17 -17.62 -0.20 0.92 16 21 N -0.49 -5.94 10.35 -13.36 -0.14 -6.08 16 22 C 0.10 1.17 11.17 -17.62 -0.20 0.97 16 23 C -0.14 -1.87 9.81 -39.03 -0.38 -2.25 16 24 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.79 7.09 -51.93 -0.37 0.43 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.32 7.96 -51.93 -0.41 0.91 16 30 H 0.10 1.04 5.72 -51.93 -0.30 0.74 16 31 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.14 1.46 3.55 -52.48 -0.19 1.28 16 33 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.15 1.88 8.05 -52.49 -0.42 1.46 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -31.83 316.28 -8.52 -40.36 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.72 Total: -0.22 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -3.24 Total: -11.49 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 1.01 Total: -50.57 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -2.31 Total: 1.26 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.83 -8.52 -40.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058869178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.736 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.69 seconds