Wall clock time and date at job start Tue Mar 31 2020 07:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47217 * 2 1 4 4 N 1.46500 * 109.46822 * 180.02562 * 3 2 1 5 5 C 1.36628 * 127.14941 * 86.36617 * 4 3 2 6 6 S 1.76205 * 126.38349 * 0.02562 * 5 4 3 7 7 C 1.76203 * 99.99713 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00108 * 359.97438 * 7 6 5 9 9 C 1.38680 * 119.99834 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99765 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00216 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47271 * 59.99572 * 11 9 7 13 13 H 1.48490 * 109.47502 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47050 * 299.99707 * 11 9 7 15 15 N 1.31648 * 107.22989 * 179.97438 * 5 4 3 16 16 N 1.28521 * 110.01862 * 359.97438 * 15 5 4 17 17 C 1.31499 * 109.92765 * 359.72232 * 16 15 5 18 18 C 1.47757 * 126.43874 * 180.30009 * 17 16 15 19 19 C 1.40053 * 120.93082 * 198.47788 * 18 17 16 20 20 C 1.37905 * 118.98587 * 179.72994 * 19 18 17 21 21 N 1.31955 * 120.90651 * 0.56115 * 20 19 18 22 22 C 1.31966 * 122.07324 * 359.71469 * 21 20 19 23 23 C 1.37896 * 120.90738 * 359.97438 * 22 21 20 24 24 H 1.09008 * 109.46837 * 300.00308 * 1 2 3 25 25 H 1.08996 * 109.46951 * 59.99844 * 1 2 3 26 26 H 1.08996 * 109.47699 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46951 * 120.00156 * 2 1 3 28 28 H 1.08999 * 109.46751 * 239.99848 * 2 1 3 29 29 H 1.08996 * 109.47025 * 299.99466 * 3 2 1 30 30 H 1.08999 * 109.47384 * 60.00235 * 3 2 1 31 31 H 0.97005 * 119.99772 * 180.02562 * 10 9 7 32 32 H 1.08003 * 120.50027 * 359.97438 * 19 18 17 33 33 H 1.08001 * 119.53905 * 180.29828 * 20 19 18 34 34 H 1.07999 * 119.54285 * 180.02562 * 22 21 20 35 35 H 1.08000 * 120.50455 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3297 1.3735 -1.0878 6 16 3.8295 1.2673 -2.7740 7 6 5.4065 1.2164 -3.5583 8 1 6.3069 1.2537 -2.9632 9 6 5.4914 1.1296 -4.9397 10 7 4.3939 1.0846 -5.6650 11 14 7.1632 1.0763 -5.7713 12 1 7.9179 -0.1087 -5.2903 13 1 6.9818 0.9834 -7.2421 14 1 7.9192 2.3115 -5.4424 15 7 5.5676 1.4023 -0.6407 16 7 5.5703 1.4845 0.6418 17 6 4.3351 1.5191 1.0914 18 6 3.9182 1.6179 2.5055 19 6 2.6209 1.2672 2.8998 20 6 2.2764 1.3695 4.2312 21 7 3.1460 1.8008 5.1251 22 6 4.3762 2.1468 4.7958 23 6 4.8077 2.0700 3.4883 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9564 0.8900 31 1 4.4533 1.0235 -6.6313 32 1 1.9025 0.9181 2.1727 33 1 1.2799 1.0968 4.5458 34 1 5.0545 2.4942 5.5610 35 1 5.8158 2.3552 3.2261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058869178.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:38 Heat of formation + Delta-G solvation = 81.776387 kcal Electronic energy + Delta-G solvation = -20053.126652 eV Core-core repulsion = 16984.614877 eV Total energy + Delta-G solvation = -3068.511775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.76399 -40.93670 -37.40761 -34.78014 -34.49224 -33.51510 -32.26279 -30.81957 -27.95643 -27.74192 -25.31125 -24.72760 -23.50802 -22.75100 -22.00597 -19.96643 -18.79342 -17.51853 -17.45711 -17.19519 -17.14827 -16.98663 -16.47180 -15.70937 -15.11322 -14.89276 -14.71797 -14.60275 -14.41059 -13.63484 -13.30609 -13.22808 -13.03767 -13.02562 -12.72204 -12.46341 -12.38905 -12.09114 -12.01425 -11.77591 -11.60770 -11.33582 -11.10729 -10.90599 -10.57164 -10.25837 -10.18780 -8.73167 -8.55494 -6.34090 -0.39017 0.11919 0.62520 0.92189 1.35603 1.40435 1.48451 1.66073 1.82254 2.10368 2.82116 2.85926 2.95146 3.02888 3.46831 3.53768 3.72403 3.75202 3.90905 4.04701 4.11390 4.24572 4.32164 4.43592 4.51839 4.59100 4.78478 4.83186 4.85636 4.96544 5.08732 5.19328 5.22390 5.38545 5.43787 5.62623 5.78693 6.18289 6.92631 6.92684 7.61416 8.53512 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023053 B = 0.004475 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.318608 B = 6255.722849 C = 7360.012258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.141 4.141 3 C 0.089 3.911 4 N -0.459 5.459 5 C 0.163 3.837 6 S 0.137 5.863 7 C -0.566 4.566 8 H 0.084 0.916 9 C 0.037 3.963 10 N -0.901 5.901 11 Si 0.992 3.008 12 H -0.269 1.269 13 H -0.264 1.264 14 H -0.269 1.269 15 N -0.345 5.345 16 N -0.303 5.303 17 C 0.185 3.815 18 C 0.026 3.974 19 C -0.173 4.173 20 C 0.112 3.888 21 N -0.497 5.497 22 C 0.110 3.890 23 C -0.147 4.147 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.282 0.718 32 H 0.160 0.840 33 H 0.198 0.802 34 H 0.190 0.810 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.478 0.159 16.051 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C -0.031 4.031 4 N -0.154 5.154 5 C -0.209 4.209 6 S 0.369 5.631 7 C -0.715 4.715 8 H 0.103 0.897 9 C -0.170 4.170 10 N -0.537 5.537 11 Si 0.814 3.186 12 H -0.194 1.194 13 H -0.188 1.188 14 H -0.193 1.193 15 N -0.191 5.191 16 N -0.144 5.144 17 C -0.083 4.083 18 C 0.015 3.985 19 C -0.195 4.195 20 C -0.044 4.044 21 N -0.207 5.207 22 C -0.046 4.046 23 C -0.169 4.169 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.118 0.882 30 H 0.147 0.853 31 H 0.091 0.909 32 H 0.177 0.823 33 H 0.215 0.785 34 H 0.207 0.793 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.404 0.175 16.143 19.206 hybrid contribution 1.496 -0.070 -1.404 2.053 sum -8.908 0.105 14.739 17.222 Atomic orbital electron populations 1.21691 0.91055 1.03622 1.03586 1.21957 0.99321 0.93818 1.02852 1.22634 0.73031 1.00843 1.06622 1.46595 1.09265 1.55849 1.03693 1.28171 0.89646 1.04182 0.98927 1.83023 1.11630 1.87171 0.81301 1.23315 0.93459 1.59858 0.94827 0.89744 1.25866 1.02408 0.92609 0.96109 1.69974 1.29374 1.46673 1.07639 0.85088 0.77024 0.79324 0.77181 1.19385 1.18801 1.19348 1.74722 1.17942 1.23833 1.02618 1.74153 1.18535 1.17923 1.03827 1.23107 0.86900 1.08210 0.90081 1.17989 0.95626 0.98868 0.85979 1.22764 0.95183 1.01825 0.99680 1.23228 1.00249 0.93310 0.87624 1.67762 1.03581 1.10715 1.38649 1.23115 0.92833 0.94360 0.94260 1.22326 1.00958 0.99844 0.93785 0.89798 0.91971 0.90943 0.90816 0.92854 0.88201 0.85308 0.90876 0.82298 0.78541 0.79285 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.91 71.98 0.71 -1.28 16 2 C -0.14 -3.08 5.64 30.59 0.17 -2.91 16 3 C 0.09 2.26 5.14 86.38 0.44 2.70 16 4 N -0.46 -16.90 2.83 -514.71 -1.46 -18.36 16 5 C 0.16 7.70 8.06 179.41 1.45 9.15 16 6 S 0.14 6.88 21.46 -56.49 -1.21 5.67 16 7 C -0.57 -32.46 9.37 67.93 0.64 -31.82 16 8 H 0.08 5.08 6.92 -2.91 -0.02 5.06 16 9 C 0.04 2.02 5.49 84.83 0.47 2.49 16 10 N -0.90 -49.95 13.22 21.63 0.29 -49.66 16 11 Si 0.99 43.68 29.55 68.60 2.03 45.71 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 15 N -0.35 -17.96 11.03 -56.60 -0.62 -18.59 16 16 N -0.30 -13.92 12.11 -50.86 -0.62 -14.54 16 17 C 0.18 6.89 7.73 136.18 1.05 7.94 16 18 C 0.03 0.73 5.90 -19.88 -0.12 0.61 16 19 C -0.17 -3.46 8.74 22.63 0.20 -3.26 16 20 C 0.11 1.86 11.17 84.60 0.94 2.81 16 21 N -0.50 -9.95 10.35 -196.20 -2.03 -11.98 16 22 C 0.11 2.15 11.17 84.59 0.94 3.09 16 23 C -0.15 -3.63 9.81 22.63 0.22 -3.41 16 24 H 0.08 0.74 8.14 -2.38 -0.02 0.73 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.53 7.09 -2.39 -0.02 1.51 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 2.58 7.96 -2.39 -0.02 2.56 16 30 H 0.13 2.37 5.72 -2.39 -0.01 2.36 16 31 H 0.28 14.44 8.31 -92.70 -0.77 13.67 16 32 H 0.16 2.58 3.55 -2.91 -0.01 2.57 16 33 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.19 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.14 3.57 8.05 -2.91 -0.02 3.55 16 Total: -1.00 -72.96 316.28 4.62 -68.34 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.12 Total: 7.30 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 7.12 Total: -13.90 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.44 Total: -113.13 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 6.88 SS G_CDS: -1.21 Total: 5.67 kcal Total: -72.96 4.62 -68.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058869178.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.118 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds