Wall clock time and date at job start Tue Mar 31 2020 08:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99568 * 2 1 4 4 H 1.08002 * 119.99373 * 202.93998 * 3 2 1 5 5 C 1.38808 * 120.00383 * 22.93529 * 3 2 1 6 6 N 1.31621 * 119.99887 * 13.04323 * 5 3 2 7 7 Si 1.86799 * 119.99992 * 193.04085 * 5 3 2 8 8 H 1.48493 * 109.47304 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46891 * 120.00486 * 7 5 3 10 10 H 1.48500 * 109.47027 * 240.00007 * 7 5 3 11 11 C 1.46496 * 120.00192 * 179.97438 * 2 1 3 12 12 N 1.46504 * 109.46934 * 90.00417 * 11 2 1 13 13 N 1.40163 * 126.33484 * 270.25240 * 12 11 2 14 14 C 1.29428 * 108.14568 * 180.14518 * 13 12 11 15 15 N 1.37491 * 108.80158 * 359.63984 * 14 13 12 16 16 C 1.40129 * 125.84638 * 180.20959 * 15 14 13 17 17 C 1.38844 * 120.06770 * 129.74960 * 16 15 14 18 18 C 1.38118 * 119.93164 * 179.77073 * 17 16 15 19 19 C 1.38284 * 120.06704 * 0.51052 * 18 17 16 20 20 C 1.38283 * 120.13373 * 359.73870 * 19 18 17 21 21 C 1.38114 * 120.06852 * 0.02562 * 20 19 18 22 22 C 1.34818 * 108.31492 * 0.23105 * 15 14 13 23 23 S 1.71198 * 126.29763 * 179.97438 * 22 15 14 24 24 H 1.09003 * 109.47045 * 275.12891 * 1 2 3 25 25 H 1.08992 * 109.47032 * 35.13675 * 1 2 3 26 26 H 1.09008 * 109.46629 * 155.13599 * 1 2 3 27 27 H 0.96996 * 120.00244 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47351 * 330.00670 * 11 2 1 29 29 H 1.09008 * 109.47402 * 210.00134 * 11 2 1 30 30 H 1.08005 * 125.59832 * 179.91140 * 14 13 12 31 31 H 1.07997 * 120.03444 * 0.02562 * 17 16 15 32 32 H 1.08001 * 119.96668 * 180.27105 * 18 17 16 33 33 H 1.07995 * 119.93810 * 179.76774 * 19 18 17 34 34 H 1.08005 * 119.96546 * 180.02562 * 20 19 18 35 35 H 1.08007 * 120.03718 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1656 1.2229 -0.3646 5 6 1.5379 2.3406 0.4684 6 7 0.4110 2.2607 1.1438 7 14 2.3140 4.0078 0.1403 8 1 3.5675 3.8263 -0.6346 9 1 1.3691 4.8491 -0.6373 10 1 2.6217 4.6732 1.4317 11 6 2.1975 -1.2687 0.0006 12 7 2.4418 -1.6921 -1.3805 13 7 1.6001 -2.4927 -2.1649 14 6 2.1573 -2.6500 -3.3224 15 7 3.3503 -1.9668 -3.3365 16 6 4.2414 -1.8937 -4.4155 17 6 4.7178 -0.6613 -4.8420 18 6 5.5997 -0.5929 -5.9028 19 6 6.0000 -1.7493 -6.5467 20 6 5.5232 -2.9778 -6.1275 21 6 4.6450 -3.0531 -5.0642 22 6 3.5165 -1.3796 -2.1344 23 16 4.8465 -0.4153 -1.6527 24 1 -0.3633 0.0919 1.0236 25 1 -0.3633 0.8403 -0.5914 26 1 -0.3633 -0.9325 -0.4321 27 1 -0.0163 3.0674 1.4715 28 1 1.6085 -2.0282 0.5146 29 1 3.1500 -1.1381 0.5144 30 1 1.7497 -3.2204 -4.1440 31 1 4.4023 0.2426 -4.3422 32 1 5.9740 0.3651 -6.2322 33 1 6.6867 -1.6931 -7.3783 34 1 5.8380 -3.8794 -6.6321 35 1 4.2732 -4.0130 -4.7370 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060355712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:57 Heat of formation + Delta-G solvation = 156.473804 kcal Electronic energy + Delta-G solvation = -20490.270171 eV Core-core repulsion = 17424.997519 eV Total energy + Delta-G solvation = -3065.272652 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34403 -39.17153 -36.23482 -34.50278 -32.36937 -31.20940 -30.80305 -29.74795 -26.64503 -26.01177 -23.74185 -23.42141 -22.17353 -21.74557 -21.06074 -18.74641 -16.96561 -16.54533 -16.26962 -16.03830 -15.83930 -15.09935 -14.79811 -14.44744 -14.29276 -13.63127 -13.56593 -13.43329 -12.92078 -12.17571 -12.06977 -11.58792 -11.51088 -11.38259 -11.08559 -10.89116 -10.75258 -10.67311 -10.59859 -10.24496 -10.06421 -9.95651 -9.11773 -8.86668 -8.77820 -7.30971 -6.97514 -6.82206 -5.98703 -3.42848 0.90296 1.24326 1.76177 1.90503 2.09338 2.93869 3.00786 3.36009 3.41789 3.52391 3.57623 4.38015 4.59088 4.67018 4.77133 4.85500 5.01460 5.19505 5.23543 5.26159 5.29879 5.49674 5.64245 5.86303 5.93166 6.17570 6.22027 6.33174 6.37146 6.49385 6.58112 6.83570 7.05990 7.17889 7.45062 7.68133 7.86840 8.09319 8.99333 9.53045 9.93832 11.05415 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.005339 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.986961 B = 5243.542751 C = 6113.954027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.142 3.858 2 N -0.539 5.539 3 C -0.278 4.278 4 H 0.109 0.891 5 C 0.014 3.986 6 N -0.897 5.897 7 Si 0.911 3.089 8 H -0.267 1.267 9 H -0.288 1.288 10 H -0.286 1.286 11 C 0.341 3.659 12 N -0.356 5.356 13 N -0.280 5.280 14 C 0.222 3.778 15 N -0.460 5.460 16 C 0.129 3.871 17 C -0.075 4.075 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.113 4.113 21 C -0.114 4.114 22 C 0.461 3.539 23 S -0.601 6.601 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.011 0.989 27 H 0.257 0.743 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.228 0.772 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 -11.880 -14.546 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 N -0.252 5.252 3 C -0.408 4.408 4 H 0.127 0.873 5 C -0.187 4.187 6 N -0.539 5.539 7 Si 0.739 3.261 8 H -0.192 1.192 9 H -0.215 1.215 10 H -0.212 1.212 11 C 0.133 3.867 12 N -0.159 5.159 13 N -0.099 5.099 14 C -0.077 4.077 15 N -0.158 5.158 16 C 0.038 3.962 17 C -0.096 4.096 18 C -0.125 4.125 19 C -0.131 4.131 20 C -0.132 4.132 21 C -0.134 4.134 22 C 0.101 3.899 23 S -0.471 6.471 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.244 0.756 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.241 -11.271 -13.238 17.896 hybrid contribution -0.004 0.613 -0.894 1.083 sum 4.237 -10.658 -14.132 18.200 Atomic orbital electron populations 1.21154 0.81669 0.96702 1.00692 1.44923 1.03124 1.01688 1.75502 1.20173 0.99732 0.84320 1.36585 0.87344 1.25170 0.97182 0.99328 0.96988 1.70107 1.19109 1.28071 1.36605 0.86060 0.79250 0.82803 0.77982 1.19150 1.21461 1.21240 1.21797 0.99294 0.88400 0.77243 1.55011 1.11203 1.36022 1.13648 1.77116 1.18338 1.12577 1.01896 1.26278 0.84866 0.98095 0.98480 1.43911 1.18176 1.42435 1.11320 1.17458 0.95306 0.94828 0.88601 1.21310 0.96191 0.97136 0.94948 1.21076 0.97136 0.99032 0.95279 1.21262 0.99555 0.92505 0.99820 1.20931 0.97354 0.98143 0.96772 1.20983 0.98666 0.96489 0.97282 1.24511 0.93709 0.89280 0.82397 1.93149 1.24034 1.46678 1.83257 0.93251 0.93412 0.97023 0.93273 0.89475 0.86906 0.75565 0.84282 0.85099 0.85602 0.85310 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.38 8.98 59.85 0.54 3.92 16 2 N -0.54 -13.31 3.16 -184.85 -0.58 -13.90 16 3 C -0.28 -7.65 9.65 -15.06 -0.15 -7.79 16 4 H 0.11 3.11 6.37 -52.49 -0.33 2.77 16 5 C 0.01 0.38 5.10 -17.43 -0.09 0.29 16 6 N -0.90 -25.31 10.71 55.49 0.59 -24.72 16 7 Si 0.91 22.36 29.57 -169.99 -5.03 17.34 16 8 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 C 0.34 7.16 6.75 -63.75 -0.43 6.73 16 12 N -0.36 -7.06 3.86 -65.17 -0.25 -7.32 16 13 N -0.28 -4.72 12.53 29.90 0.37 -4.35 16 14 C 0.22 2.97 12.35 -88.97 -1.10 1.87 16 15 N -0.46 -7.31 2.85 -62.93 -0.18 -7.49 16 16 C 0.13 1.79 5.78 -83.61 -0.48 1.31 16 17 C -0.08 -1.08 8.79 -39.40 -0.35 -1.42 16 18 C -0.11 -1.18 10.04 -39.61 -0.40 -1.58 16 19 C -0.11 -1.02 10.04 -39.55 -0.40 -1.42 16 20 C -0.11 -1.00 10.04 -39.61 -0.40 -1.40 16 21 C -0.11 -1.20 9.67 -39.40 -0.38 -1.58 16 22 C 0.46 9.26 7.70 -86.73 -0.67 8.59 16 23 S -0.60 -13.92 27.13 -107.50 -2.92 -16.84 16 24 H 0.05 1.23 7.34 -51.93 -0.38 0.85 16 25 H 0.05 1.24 7.34 -51.93 -0.38 0.85 16 26 H 0.01 0.24 8.03 -51.92 -0.42 -0.18 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.09 1.62 8.07 -51.93 -0.42 1.21 16 29 H 0.11 2.47 7.59 -51.92 -0.39 2.07 16 30 H 0.23 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.14 2.35 7.50 -52.49 -0.39 1.96 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -33.27 316.88 -11.48 -44.75 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.97 Total: 0.22 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -4.30 Total: 7.53 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.05 Total: -57.77 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.34 kcal Atomic # 16 Polarization: -13.92 SS G_CDS: -2.92 Total: -16.84 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.27 -11.48 -44.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060355712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.222 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds