Wall clock time and date at job start Tue Mar 31 2020 08:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99568 * 2 1 4 4 H 1.08002 * 119.99373 * 202.93998 * 3 2 1 5 5 C 1.38808 * 120.00383 * 22.93529 * 3 2 1 6 6 N 1.31621 * 119.99887 * 13.04323 * 5 3 2 7 7 Si 1.86799 * 119.99992 * 193.04085 * 5 3 2 8 8 H 1.48493 * 109.47304 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.46891 * 120.00486 * 7 5 3 10 10 H 1.48500 * 109.47027 * 240.00007 * 7 5 3 11 11 C 1.46496 * 120.00192 * 179.97438 * 2 1 3 12 12 N 1.46504 * 109.46934 * 90.00417 * 11 2 1 13 13 N 1.40163 * 126.33484 * 270.25240 * 12 11 2 14 14 C 1.29428 * 108.14568 * 180.14518 * 13 12 11 15 15 N 1.37491 * 108.80158 * 359.63984 * 14 13 12 16 16 C 1.40129 * 125.84638 * 180.20959 * 15 14 13 17 17 C 1.38844 * 120.06770 * 129.74960 * 16 15 14 18 18 C 1.38118 * 119.93164 * 179.77073 * 17 16 15 19 19 C 1.38284 * 120.06704 * 0.51052 * 18 17 16 20 20 C 1.38283 * 120.13373 * 359.73870 * 19 18 17 21 21 C 1.38114 * 120.06852 * 0.02562 * 20 19 18 22 22 C 1.34818 * 108.31492 * 0.23105 * 15 14 13 23 23 S 1.71198 * 126.29763 * 179.97438 * 22 15 14 24 24 H 1.09003 * 109.47045 * 275.12891 * 1 2 3 25 25 H 1.08992 * 109.47032 * 35.13675 * 1 2 3 26 26 H 1.09008 * 109.46629 * 155.13599 * 1 2 3 27 27 H 0.96996 * 120.00244 * 179.97438 * 6 5 3 28 28 H 1.09000 * 109.47351 * 330.00670 * 11 2 1 29 29 H 1.09008 * 109.47402 * 210.00134 * 11 2 1 30 30 H 1.08005 * 125.59832 * 179.91140 * 14 13 12 31 31 H 1.07997 * 120.03444 * 0.02562 * 17 16 15 32 32 H 1.08001 * 119.96668 * 180.27105 * 18 17 16 33 33 H 1.07995 * 119.93810 * 179.76774 * 19 18 17 34 34 H 1.08005 * 119.96546 * 180.02562 * 20 19 18 35 35 H 1.08007 * 120.03718 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1656 1.2229 -0.3646 5 6 1.5379 2.3406 0.4684 6 7 0.4110 2.2607 1.1438 7 14 2.3140 4.0078 0.1403 8 1 3.5675 3.8263 -0.6346 9 1 1.3691 4.8491 -0.6373 10 1 2.6217 4.6732 1.4317 11 6 2.1975 -1.2687 0.0006 12 7 2.4418 -1.6921 -1.3805 13 7 1.6001 -2.4927 -2.1649 14 6 2.1573 -2.6500 -3.3224 15 7 3.3503 -1.9668 -3.3365 16 6 4.2414 -1.8937 -4.4155 17 6 4.7178 -0.6613 -4.8420 18 6 5.5997 -0.5929 -5.9028 19 6 6.0000 -1.7493 -6.5467 20 6 5.5232 -2.9778 -6.1275 21 6 4.6450 -3.0531 -5.0642 22 6 3.5165 -1.3796 -2.1344 23 16 4.8465 -0.4153 -1.6527 24 1 -0.3633 0.0919 1.0236 25 1 -0.3633 0.8403 -0.5914 26 1 -0.3633 -0.9325 -0.4321 27 1 -0.0163 3.0674 1.4715 28 1 1.6085 -2.0282 0.5146 29 1 3.1500 -1.1381 0.5144 30 1 1.7497 -3.2204 -4.1440 31 1 4.4023 0.2426 -4.3422 32 1 5.9740 0.3651 -6.2322 33 1 6.6867 -1.6931 -7.3783 34 1 5.8380 -3.8794 -6.6321 35 1 4.2732 -4.0130 -4.7370 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060355712.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:57 Heat of formation + Delta-G solvation = 138.952866 kcal Electronic energy + Delta-G solvation = -20491.029936 eV Core-core repulsion = 17424.997519 eV Total energy + Delta-G solvation = -3066.032417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.77683 -40.12897 -37.98497 -35.91982 -34.00611 -32.71595 -31.95358 -30.85331 -28.34338 -27.93857 -25.15416 -24.61173 -23.44312 -23.05420 -22.56977 -19.96401 -18.89916 -17.77993 -17.72967 -17.42699 -17.08096 -16.82017 -16.14183 -15.83709 -15.40373 -15.22280 -15.12025 -14.41456 -14.13651 -13.88678 -13.44439 -13.17103 -13.02190 -12.79129 -12.64812 -12.55581 -12.39482 -12.31923 -12.14020 -12.04698 -11.86995 -11.60067 -10.86309 -9.97315 -9.81486 -9.26575 -8.71907 -8.62265 -8.03246 -5.52773 -0.19351 0.31780 0.38992 0.41116 0.90465 1.30071 1.38609 1.40861 1.54095 1.71796 2.40109 2.70555 3.18880 3.30385 3.39187 3.73852 3.80977 3.96332 4.06809 4.25161 4.29610 4.45419 4.47127 4.61353 4.65017 4.72366 5.05204 5.06278 5.29923 5.36979 5.39042 5.51916 5.53899 5.64923 5.73998 6.02347 6.12926 6.25540 6.96449 7.54946 7.93901 8.99918 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.020241 B = 0.005339 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.986961 B = 5243.542751 C = 6113.954027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.568 5.568 3 C -0.281 4.281 4 H 0.089 0.911 5 C -0.032 4.032 6 N -0.923 5.923 7 Si 0.961 3.039 8 H -0.280 1.280 9 H -0.284 1.284 10 H -0.281 1.281 11 C 0.360 3.640 12 N -0.366 5.366 13 N -0.299 5.299 14 C 0.256 3.744 15 N -0.447 5.447 16 C 0.093 3.907 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.099 4.099 20 C -0.103 4.103 21 C -0.103 4.103 22 C 0.464 3.536 23 S -0.677 6.677 24 H 0.030 0.970 25 H 0.017 0.983 26 H 0.037 0.963 27 H 0.254 0.746 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.294 0.706 31 H 0.097 0.903 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.057 -15.240 -17.946 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.285 5.285 3 C -0.411 4.411 4 H 0.107 0.893 5 C -0.229 4.229 6 N -0.567 5.567 7 Si 0.789 3.211 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.208 1.208 11 C 0.153 3.847 12 N -0.164 5.164 13 N -0.118 5.118 14 C -0.042 4.042 15 N -0.143 5.143 16 C 0.004 3.996 17 C -0.123 4.123 18 C -0.134 4.134 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.123 4.123 22 C 0.099 3.901 23 S -0.549 6.549 24 H 0.049 0.951 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.133 0.867 29 H 0.115 0.885 30 H 0.309 0.691 31 H 0.115 0.885 32 H 0.159 0.841 33 H 0.179 0.821 34 H 0.188 0.812 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.726 -14.687 -16.709 22.743 hybrid contribution -0.025 1.322 -0.197 1.337 sum 4.701 -13.365 -16.906 22.057 Atomic orbital electron populations 1.20805 0.81335 0.96573 0.99110 1.44862 1.03263 1.01824 1.78549 1.20071 0.99237 0.85817 1.35940 0.89292 1.25697 0.98008 1.01529 0.97619 1.70196 1.20110 1.28146 1.38291 0.85304 0.77900 0.80284 0.77631 1.20545 1.21023 1.20769 1.21642 0.98759 0.87949 0.76349 1.53457 1.11897 1.36829 1.14260 1.77149 1.18024 1.13532 1.03105 1.27628 0.82605 0.95429 0.98492 1.43860 1.19128 1.41023 1.10313 1.17764 0.96926 0.96084 0.88856 1.21152 0.98345 0.96131 0.96700 1.21279 0.96535 1.00887 0.94658 1.21716 0.98680 0.91658 0.99676 1.21457 0.95555 0.99497 0.95599 1.21304 0.98139 0.96009 0.96813 1.23750 0.92727 0.89494 0.84097 1.93230 1.26782 1.50209 1.84651 0.95141 0.96437 0.94400 0.93637 0.86674 0.88522 0.69077 0.88504 0.84104 0.82071 0.81203 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.05 8.98 127.77 1.15 9.20 16 2 N -0.57 -28.81 3.16 -738.75 -2.34 -31.14 16 3 C -0.28 -16.10 9.65 84.03 0.81 -15.29 16 4 H 0.09 5.40 6.37 -2.91 -0.02 5.38 16 5 C -0.03 -1.82 5.10 84.86 0.43 -1.38 16 6 N -0.92 -54.04 10.71 21.65 0.23 -53.81 16 7 Si 0.96 48.08 29.57 68.60 2.03 50.11 16 8 H -0.28 -14.43 7.11 99.48 0.71 -13.72 16 9 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 10 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 11 C 0.36 15.30 6.75 170.96 1.15 16.45 16 12 N -0.37 -14.28 3.86 -360.11 -1.39 -15.68 16 13 N -0.30 -9.24 12.53 -59.31 -0.74 -9.99 16 14 C 0.26 5.80 12.35 179.77 2.22 8.02 16 15 N -0.45 -13.38 2.85 -353.00 -1.01 -14.39 16 16 C 0.09 2.39 5.78 38.11 0.22 2.61 16 17 C -0.10 -2.94 8.79 22.39 0.20 -2.74 16 18 C -0.11 -2.36 10.04 22.25 0.22 -2.14 16 19 C -0.10 -1.35 10.04 22.29 0.22 -1.13 16 20 C -0.10 -1.22 10.04 22.25 0.22 -1.00 16 21 C -0.10 -1.67 9.67 22.39 0.22 -1.46 16 22 C 0.46 18.70 7.70 178.99 1.38 20.07 16 23 S -0.68 -32.91 27.13 -56.49 -1.53 -34.44 16 24 H 0.03 1.56 7.34 -2.39 -0.02 1.54 16 25 H 0.02 0.91 7.34 -2.39 -0.02 0.89 16 26 H 0.04 1.58 8.03 -2.38 -0.02 1.56 16 27 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.12 4.18 8.07 -2.39 -0.02 4.17 16 29 H 0.10 4.39 7.59 -2.38 -0.02 4.37 16 30 H 0.29 2.40 8.06 -2.91 -0.02 2.37 16 31 H 0.10 3.55 7.50 -2.91 -0.02 3.53 16 32 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 33 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 34 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -79.48 316.88 4.80 -74.68 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.10 Total: 3.42 kcal Atomic # 6 Polarization: 22.79 SS G_CDS: 8.45 Total: 31.23 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -5.25 Total: -125.00 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Atomic # 16 Polarization: -32.91 SS G_CDS: -1.53 Total: -34.44 kcal Total: -79.48 4.80 -74.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060355712.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.634 kcal (2) G-P(sol) polarization free energy of solvation -79.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds